Rh4CG024600

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
4707210 .. 4708223
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG024600.1

Sequence Viewer

Length: 1014 bp
ATGGATGAGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGCCTCAGATGCATAGCATTTGCACATAAACAAGTTCCAGCAGAAGAGCAACTAAATGCAGACCAGAAAGTTTTGCCAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGACCTTAAAGATCTATGTCGTTCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAAGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTTGGAGCAGTCATAGAAGCTGTCGCATTCCGCAACTACACGCTAGAAGAGAGATCGGAGAAAGTTGAGAAAATTTCAGTGATGGCAAGATCTTCTCCGTTTGATAAGCTTCTAATGGTGCAGTGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACCGGTGACGGCCCCAATGATGCACCAGCATTGAAAGAAGCTGATATAGGACTCTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGGTATTGTGATCCTGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGCTGTGGAGAAGATGTGTGTACAATAATATCCAGAAGTTCATACAATTCCAACTCACCGTTAATGTTGCAGCTATTGTGATCAACTTTGTTGTGGCAGTTTCAGAAGGTCAAGTCCCATTAACAGAAGTTAAGTTACTGTGGGTCACCTTGATCATCGACACACTTGGACCTCTTTCTCTTGCCACAGAAAAACCCACAACAGAACTTATGGAGAAGCCACCAGTAGGAAGGACGGCACCTCTCATCACAAACATCATGTGGAGGAATCTCTTGCCTCAAGCACTGCACCAAATAAAAGTCCTCTTGATCTTACAATTTAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGAAAAGGACACAATGATCTTCAACACTTTTGTGCTTTGCTAG

Protein Analysis

337

Amino Acids

37.15

Weight (kDa)

6.47

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 1 - 64 1.3e-06 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 45 - 174 2.6e-10 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 245 - 337 5.8e-20 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 856
AciI CCGC 2 cut(s) 270, 352
AclWI GGATC 1 cut(s) 577
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 845
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 6 cut(s) 41, 212, 451, 511, 545, 994
AjnI CCWGG 2 cut(s) 307, 585
AleI CACNNNNGTG 1 cut(s) 1001
AluBI AGCT 6 cut(s) 53, 341, 430, 518, 570, 692
AluI AGCT 6 cut(s) 53, 341, 430, 518, 570, 692
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 577
AoxI GGCC 2 cut(s) 305, 487
ApeKI GCWGC 3 cut(s) 50, 57, 689
ApoI RAATTY 1 cut(s) 393
AsiGI ACCGGT 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 169, 488, 788
AsuHPI GGTGA 5 cut(s) 244, 259, 494, 667, 757
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 2 cut(s) 169, 788
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 738, 770
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 3 cut(s) 62, 69, 701
BccI CCATC 2 cut(s) 137, 397
BceAI ACGGC 2 cut(s) 502, 870
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 2 cut(s) 309, 587
BciVI GTATCC 1 cut(s) 291
BclI TGATCA 2 cut(s) 699, 771
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 3 cut(s) 54, 365, 1012
BfuI GTATCC 1 cut(s) 291
BglII AGATCT 2 cut(s) 178, 410
BisI GCNGC 3 cut(s) 51, 58, 690
BlsI GCNGC 3 cut(s) 52, 59, 691
Bme1390I CCNGG 2 cut(s) 309, 587
Bme18I GGWCC 2 cut(s) 169, 788
BmgT120I GGNCC 3 cut(s) 169, 488, 788
BmiI GGNNCC 2 cut(s) 490, 858
BmrFI CCNGG 2 cut(s) 309, 587
BmsI GCATC 2 cut(s) 56, 487
BmtI GCTAGC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 571
BpuEI CTTGAG 1 cut(s) 882
BsaWI WCCGGW 2 cut(s) 251, 479
BsaXI ACNNNNNCTCC 4 cut(s) 246, 276, 619, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 845
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 1 cut(s) 842
BseBI CCWGG 2 cut(s) 309, 587
BseGI GGATG 2 cut(s) 10, 595
BseLI CCNNNNNNNGG 1 cut(s) 845
BseMII CTCAG 3 cut(s) 76, 316, 585
BseNI ACTGG 1 cut(s) 842
BseXI GCAGC 3 cut(s) 62, 69, 701
BsgI GTGCAG 2 cut(s) 461, 890
BshFI GGCC 2 cut(s) 307, 489
BshNI GGYRCC 1 cut(s) 856
BshTI ACCGGT 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 572
BsiSI CCGG 2 cut(s) 252, 480
BslFI GGGAC 2 cut(s) 174, 719
BslI CCNNNNNNNGG 1 cut(s) 845
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 2 cut(s) 174, 719
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 2 cut(s) 307, 489
Bsp1286I GDGCHC 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
BspACI CCGC 2 cut(s) 270, 352
BspANI GGCC 2 cut(s) 307, 489
BspCNI CTCAG 3 cut(s) 75, 315, 584
BspLI GGNNCC 2 cut(s) 490, 858
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 577
BspQI GCTCTTC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 479
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 842
BssAI RCCGGY 1 cut(s) 479
BssMI GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
Bst2UI CCWGG 2 cut(s) 309, 587
Bst4CI ACNGT 3 cut(s) 616, 679, 759
Bst6I CTCTTC 2 cut(s) 96, 363
BstAUI TGTACA 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 62, 302, 571
BstEII GGTNACC 1 cut(s) 763
BstF5I GGATG 2 cut(s) 10, 595
BstKTI GATC 8 cut(s) 181, 377, 413, 585, 702, 774, 930, 990
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
BstMWI GCNNNNNNNGC 2 cut(s) 66, 608
BstNI CCWGG 2 cut(s) 309, 587
BstNSI RCATGY 1 cut(s) 322
BstPI GGTNACC 1 cut(s) 763
BstSCI CCNGG 2 cut(s) 307, 585
BstV1I GCAGC 3 cut(s) 62, 69, 701
BstX2I RGATCY 2 cut(s) 178, 410
BstYI RGATCY 2 cut(s) 178, 410
BsuI GTATCC 1 cut(s) 291
BsuRI GGCC 2 cut(s) 307, 489
BtsCI GGATG 2 cut(s) 10, 595
BtsI GCAGTG 3 cut(s) 449, 480, 902
BtsIMutI CAGTG 6 cut(s) 285, 405, 449, 480, 902, 970
Cac8I GCNNGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 3 cut(s) 169, 488, 788
Csp6I GTAC 1 cut(s) 640
CspAI ACCGGT 1 cut(s) 479
CviAII CATG 3 cut(s) 319, 464, 877
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 3 cut(s) 62, 302, 571
DpnI GATC 8 cut(s) 180, 376, 412, 584, 701, 773, 929, 989
DpnII GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
Eam1104I CTCTTC 2 cut(s) 96, 363
EarI CTCTTC 2 cut(s) 96, 363
Ecl136II GAGCTC 1 cut(s) 570
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 572
Eco47I GGWCC 2 cut(s) 169, 788
Eco53kI GAGCTC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 588
Eco91I GGTNACC 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 570
EcoO65I GGTNACC 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 307, 585
EcoT22I ATGCAT 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 572
FaeI CATG 3 cut(s) 322, 467, 880
FaqI GGGAC 2 cut(s) 174, 719
FatI CATG 3 cut(s) 318, 463, 876
FbaI TGATCA 2 cut(s) 699, 771
Fnu4HI GCNGC 3 cut(s) 51, 58, 690
FokI GGATG 2 cut(s) 17, 602
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 3 cut(s) 51, 58, 690
FspBI CTAG 3 cut(s) 54, 365, 1012
GluI GCNGC 3 cut(s) 51, 58, 690
HaeIII GGCC 2 cut(s) 307, 489
HapII CCGG 2 cut(s) 252, 480
Hin1II CATG 3 cut(s) 322, 467, 880
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 3 cut(s) 528, 541, 886
HpaII CCGG 2 cut(s) 252, 480
HphI GGTGA 5 cut(s) 244, 259, 494, 667, 757
Hpy166II GTNNAC 3 cut(s) 169, 235, 640
Hpy188I TCNGA 3 cut(s) 65, 379, 724
Hpy188III TCNNGA 3 cut(s) 314, 652, 925
Hpy8I GTNNAC 3 cut(s) 169, 235, 640
HpyAV CCTTC 2 cut(s) 719, 843
HpyCH4III ACNGT 3 cut(s) 616, 679, 759
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 9 cut(s) 69, 80, 116, 227, 442, 473, 500, 689, 907
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 608
HpyF3I CTNAG 3 cut(s) 62, 302, 571
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 322, 467, 880
Ksp22I TGATCA 2 cut(s) 699, 771
Kzo9I GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 3 cut(s) 62, 69, 701
LweI GCATC 2 cut(s) 56, 487
MaeI CTAG 3 cut(s) 54, 365, 1012
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 475, 482, 753, 763
MalI GATC 8 cut(s) 180, 376, 412, 584, 701, 773, 929, 989
MboI GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
MboII GAAGA 7 cut(s) 113, 152, 224, 380, 405, 642, 982
MflI RGATCY 2 cut(s) 178, 410
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 3 cut(s) 393, 665, 935
MlyI GAGTC 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 694
MnlI CCTC 6 cut(s) 71, 801, 870, 876, 906, 932
Mph1103I ATGCAT 1 cut(s) 71
MseI TTAA 4 cut(s) 174, 681, 740, 750
MslI CAYNNNNRTG 1 cut(s) 1001
MspI CCGG 2 cut(s) 252, 480
MspR9I CCNGG 2 cut(s) 309, 587
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 2 cut(s) 309, 587
MwoI GCNNNNNNNGC 2 cut(s) 66, 608
NdeII GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 3 cut(s) 322, 467, 880
NlaIV GGNNCC 2 cut(s) 490, 858
NmuCI GTSAC 3 cut(s) 475, 482, 763
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 1001
PceI AGGCCT 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 96
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 541, 886
PfoI TCCNGGA 1 cut(s) 585
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 3 cut(s) 52, 59, 691
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 572
Psp6I CCWGG 2 cut(s) 307, 585
PspEI GGTNACC 1 cut(s) 763
PspGI CCWGG 2 cut(s) 307, 585
PspN4I GGNNCC 2 cut(s) 490, 858
PspPI GGNCC 3 cut(s) 169, 488, 788
PsuI RGATCY 2 cut(s) 178, 410
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 1001
SacI GAGCTC 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 174, 681, 740, 750
SatI GCNGC 3 cut(s) 51, 58, 690
Sau3AI GATC 8 cut(s) 178, 374, 410, 582, 699, 771, 927, 987
Sau96I GGNCC 3 cut(s) 169, 488, 788
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 2 cut(s) 309, 587
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 2 cut(s) 56, 487
SinI GGWCC 2 cut(s) 169, 788
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 1 cut(s) 897
SmoI CTYRAG 1 cut(s) 897
Sse9I AATT 3 cut(s) 393, 665, 935
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 2 cut(s) 270, 352
SspMI CTAG 3 cut(s) 54, 365, 1012
SstI GAGCTC 1 cut(s) 572
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 2 cut(s) 307, 585
TaaI ACNGT 3 cut(s) 616, 679, 759
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 777
TasI AATT 3 cut(s) 393, 665, 935
TatI WGTACW 1 cut(s) 639
TfiI GAWTC 2 cut(s) 541, 886
Tru1I TTAA 4 cut(s) 174, 681, 740, 750
Tru9I TTAA 4 cut(s) 174, 681, 740, 750
TscAI CASTG 6 cut(s) 292, 405, 449, 480, 909, 970
TseFI GTSAC 3 cut(s) 475, 482, 763
TseI GCWGC 3 cut(s) 50, 57, 689
Tsp45I GTSAC 3 cut(s) 475, 482, 763
TspDTI ATGAA 2 cut(s) 27, 649
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 6 cut(s) 292, 405, 449, 480, 909, 970
VpaK11BI GGWCC 2 cut(s) 169, 788
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 322
XspI CTAG 3 cut(s) 54, 365, 1012
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.