Rroxscaffold_1G00042120

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
60153613 .. 60156633
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042120.1

Sequence Viewer

Length: 3021 bp
ATGTCTGATTCTCCAACCATGCACATGCATGCAGAGAGCATGCTTGATGATCCCAGCACTAGGCTCCTTAATGATAAACCCAAAAACAAATGGCGTATTGCTGTTTCCACCATCTTCTGCATTCGTGCCCTCCTCTCTTTACTCAACCAAATCACAAAAACCAACTTCATAACATCTACCTCTCCGGTCTCTTCCAATAGTACTTTCAATGTGGACCAAATAGCTCTCACTCGGCTTGTGAAGAACAAAGATCTTGCTCAACTGCAAGAGTTGGGAGGGGTTGAAGGAGTAGCATTACATCTCAAGTCTGATAAAGAGCATGGAATTCCTTTCCATGATGCTGAGGACATTCCGGACAGAATCAAAGAATTCGGTTCAAACGTTTACAGAAAAGCCCCCAAAGGAGGATTTTTCCGTTTTGTGTGGGAAGCCTTCAAAGACCCAACAGTAGTCATCCTCTTAGGCTGTGCGGCACTTTCTCTTGGTTTTGACATCAAAGAACATGGATTCAAAGAAGGCTGTACTAATGGTGGAACCATATTGCTCGCAGTCATTCAAATCATTTCCGTGTCTGCAGTAAGCGATTACAGGCAGAGCAGACCTTTGGTGCGTAACAATATCCAAATTGAGGCGTGGAGAGGTGGCAGGAGGCAAAAGATTTCTGTTTCTGAAACTGTGGTTGGGGATGTAATTCTCTTGAATATTGGAGATCGGGTGCCGGCTGATGGATTACTTGTACAAGGCCATTCCTTGCAAGTAGACGAATCAAGCATGACAGGAACCGATAGCCCTGTTGAAATTAGCCACCATCAGAATCCCTTCCTTTTTTCTGGGACAAAAATCACACATGGATATGGTCGAATGCTTGTAACATCCGTTGGGATGAACACAACGTGGGGTGAGATGATGAGCCAAATGAGGCAAGACTCCAGTGAAAGGACACCCCTGCAAGAACGTCTGGAGAAGCTAAATTCGTTAATAGGTAAAGTAGCTTTGCTAGTTGCTTTCCTTCTTCTTGTAGTCTTGTTAGTTCGATACTTCACGGGAAATACCAAGGATGAGAATAGAAACAAGGAGTTCAATGGCAGCAACACAGAAGTAGATGACATAATAAGCGCTGTCATTGGGATTGTATTAGCGGCTGCGGTTTCCATTGTTGTGGTGGCAATTCCAGAAGGTCTCTCATTAGCACTAATTCTTGCTGTTGCCTATTCCAAGAAGATAATGATGGCTGACAAAGCAATGGATCTGAAGCTCTCTGCTTGTGAGACAATGGGATCTGTTACCACAATTTGCACTGACAAAACAGGTACTCTTACTATGAACCAGATGGAGGTGACCCAGTTTTGGTTAGGTAAATATTCTTTGGAAGAAGAAGCTTATTCATCAGAGATTTCTCCTTCTGTTCTTCATTTGATCCAAGAAGGAGTTGCTCTGAATACAACTGGTAGTGTGCACAAGCAAAGTTTGGATTCAAAAGTAGAAATCTCAGGCAGTCCAACTGAAAAGGCTATTATTTCATGGGGGGTATTTAAGTTGCAGATGGATATGGAGAAAGTAATGAAGAGTTGTAGCATTCTCCATGTTGAGGCCTTTGATTCGCAGAAAATGCGAAGTGGGGTTTCAGTGAAGAGGAATGCTGACAACACAGTTCATGTACATTGGAAAGGAGCTGCAGAGATCATACTGGAAATGTGTTCAAGTTACTACAATCCCTCTGGACTCGTTATAGATATGGGTGACAGTGAAAAAATGAGTTTTGAGGAGATTATTCAAGGTATGGCAGCTAGCAGACTCCGGTGTATTGCGTTTGCACATAGAGAAGTTCCAGCAGATCAAAACCATAGAACTGTGCTAAAAGAAGATGGATTGACCTTGGTGGGACTTGTAGGTCTTAAAGACCCATGCCGTCCAGAAGCAAAGAGAGCAGTTGAAGATTGTCAATATGCAGGGGTGATGGTCAAAATGATTACAGGCGACAATATTTTCACTGCTAAAGCGATAGCCACAGAATGTGGGATACTCAAGTCCAGTGATGACATCTTCAGTGGAGCAGTGATAAACGGTCTGGAATTTCGAAGCTACACCGACTTGGAGAGAATGTTGAAGCTGGACAATATCTGTGTAATGGCGAGGTCTTCTGCAGCTGATAAGCTTCTAATGGTGCGATGCTTGAAGCAGAAAGGTCATGTAGTTGCAGTGACTGGTCATGGCGCTACTGATGCCCCAGCATTGGAAGAAGCTGATATAGGACTATCTATGGGAATTCAAGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTATAATCACGGATGATAACTTTGCTTCAGTGGTCAGTGTTTTGGCATGCGGAAGATGTGTTTATCACAATACGCAGAAGCTCGTCCAATTCCAGCTCACATCAAATGTTGCTGGTCTTTTGATCAACTTTGCAGTAGCGGCTTCATCAAGGCAAGTGCCATTTACGATAGTTCGTTCAATTTGGTTGAACATGATTATGGACACACTACTAGCTCTGGCTCTTACCAAGGACAAACCCACAAAAGAACTCATGGAAAAGCCACCGGTGGGCAGAACTGAGCCCTTCTTCACCAATGCCATGTGCAGGAACCTCTTGGCTCAAGCTCTGTACCAAACAACCGTCCTCTTGATATTACAGTTCAGGGGAGAAGCAATGTTTGGTGTTAATGATAAGGTAAATGGCACCTTGATCTTTAATACTTTTGTGTTTTGCCAGATGTTCAATGAGTTTAATGCCAGGAAGCTTGTGAAGAAGGATATCTTTAGGAATATCCACACCGACAAATTGTTCATGGGGATAATTGCAGTGGCAGTTATTCTACAGATTGTGACCGTGGAATTTCTAAGCAAATTTGAAGATATAGAGAGGTTGAACTACAGACTATGGGGAGTATGTCTTGGTATTGCGGCCATTTCTTGGCCAATCGGTTGGGCTGTTAAGTGTATACCTGTGCCACAGAAACCCATTTTCCACTACCTGAAGATGAAGATGCACTGA

Protein Analysis

1006

Amino Acids

110.95

Weight (kDa)

6.66

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 91 - 160 1e-12 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 212 - 306 2.6e-20 P-type ATPase actuator domain
Cation_ATPase PF13246 471 - 639 1e-26 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 604 - 749 2.4e-08 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 820 - 989 5.9e-37 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2306
AasI GACNNNNNNGTC 1 cut(s) 1890
AccB1I GGYRCC 2 cut(s) 715, 2705
AccB7I CCANNNNNTGG 1 cut(s) 2940
AccI GTMKAC 2 cut(s) 759, 2968
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 6 cut(s) 470, 1139, 1145, 2352, 2441, 2930
AclI AACGTT 1 cut(s) 381
AclWI GGATC 4 cut(s) 44, 1254, 1285, 1411
AcoI YGGCCR 2 cut(s) 2931, 2942
AcsI RAATTY 7 cut(s) 324, 368, 970, 2072, 2265, 2861, 2873
AcuI CTGAAG 3 cut(s) 1271, 2029, 2313
AdeI CACNNNGTG 1 cut(s) 894
AfaI GTAC 6 cut(s) 202, 523, 738, 1312, 1659, 2633
AfeI AGCGCT 1 cut(s) 1117
AgeI ACCGGT 1 cut(s) 2566
AjnI CCWGG 1 cut(s) 2759
AjuI GAANNNNNNNTTGG 6 cut(s) 188, 220, 663, 695, 2664, 2696
Alw21I GWGCWC 1 cut(s) 1458
Alw26I GTCTC 3 cut(s) 193, 1184, 1262
Alw44I GTGCAC 1 cut(s) 1454
AlwI GGATC 4 cut(s) 44, 1254, 1285, 1411
AlwNI CAGNNNCTG 1 cut(s) 2204
Aor13HI TCCGGA 1 cut(s) 352
Aor51HI AGCGCT 1 cut(s) 1117
AoxI GGCC 4 cut(s) 742, 1590, 2931, 2942
ApaLI GTGCAC 1 cut(s) 1454
ApeKI GCWGC 5 cut(s) 1086, 1142, 1673, 1784, 2144
ApoI RAATTY 7 cut(s) 324, 368, 970, 2072, 2265, 2861, 2873
AsiGI ACCGGT 1 cut(s) 2566
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 2 cut(s) 1118, 2216
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 5 cut(s) 911, 1348, 1751, 1966, 2584
AsuII TTCGAA 1 cut(s) 2077
AsuNHI GCTAGC 1 cut(s) 1787
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 2 cut(s) 130, 1458
BaeI ACNNNNGTAYC 2 cut(s) 2012, 2045
BalI TGGCCA 1 cut(s) 2944
BanI GGYRCC 2 cut(s) 715, 2705
BanII GRGCYC 1 cut(s) 2586
BbsI GAAGAC 1 cut(s) 2130
Bbv12I GWGCWC 1 cut(s) 1458
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 5 cut(s) 1098, 1129, 1660, 1796, 2156
BccI CCATC 8 cut(s) 119, 719, 816, 1222, 1324, 1537, 1859, 1951
BceAI ACGGC 1 cut(s) 1893
BciT130I CCWGG 1 cut(s) 2761
BciVI GTATCC 1 cut(s) 2013
BclI TGATCA 1 cut(s) 2424
BcoDI GTCTC 3 cut(s) 193, 1184, 1262
BfaI CTAG 4 cut(s) 60, 998, 1788, 2513
BfmI CTRYAG 5 cut(s) 573, 1674, 2142, 2843, 2899
BfoI RGCGCY 2 cut(s) 1119, 2217
BfuI GTATCC 1 cut(s) 2013
BglII AGATCT 1 cut(s) 250
BisI GCNGC 9 cut(s) 471, 1087, 1140, 1143, 1674, 1785, 2145, 2442, 2931
BlsI GCNGC 9 cut(s) 472, 1088, 1141, 1144, 1675, 1786, 2146, 2443, 2932
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 2761
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 6 cut(s) 65, 535, 717, 781, 2612, 2707
BmrFI CCNGG 1 cut(s) 2761
BmrI ACTGGG 1 cut(s) 1336
BmsI GCATC 4 cut(s) 328, 2159, 2212, 3003
BmtI GCTAGC 1 cut(s) 1791
BmuI ACTGGG 1 cut(s) 1336
BpiI GAAGAC 1 cut(s) 2130
BpmI CTGGAG 2 cut(s) 913, 980
Bpu10I CCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 2077
BpuEI CTTGAG 3 cut(s) 287, 2009, 2607
BsaI GGTCTC 2 cut(s) 193, 1184
BsaJI CCNNGG 4 cut(s) 1053, 1875, 2529, 2856
BsaWI WCCGGW 4 cut(s) 184, 352, 1797, 2566
BsaXI ACNNNNNCTCC 4 cut(s) 699, 729, 2087, 2117
Bse118I RCCGGY 2 cut(s) 718, 2566
Bse1I ACTGG 6 cut(s) 930, 1342, 1450, 1692, 2031, 2209
Bse3DI GCAATG 2 cut(s) 1248, 2682
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 1 cut(s) 2761
BseDI CCNNGG 4 cut(s) 1053, 1875, 2529, 2856
BseGI GGATG 6 cut(s) 453, 691, 872, 888, 1063, 2320
BseMI GCAATG 2 cut(s) 1248, 2682
BseMII CTCAG 4 cut(s) 333, 1503, 2310, 2571
BseNI ACTGG 6 cut(s) 930, 1342, 1450, 1692, 2031, 2209
BseRI GAGGAG 2 cut(s) 122, 1778
BseSI GKGCMC 2 cut(s) 130, 1458
BseXI GCAGC 5 cut(s) 1098, 1129, 1660, 1796, 2156
BseYI CCCAGC 2 cut(s) 53, 2227
BsgI GTGCAG 1 cut(s) 2626
BshFI GGCC 4 cut(s) 744, 1592, 2933, 2944
BshNI GGYRCC 2 cut(s) 715, 2705
BshTI ACCGGT 1 cut(s) 2566
BsiHKAI GWGCWC 1 cut(s) 1458
BsiSI CCGG 5 cut(s) 185, 353, 719, 1798, 2567
BslFI GGGAC 2 cut(s) 847, 1896
BsmAI GTCTC 3 cut(s) 193, 1184, 1262
BsmFI GGGAC 2 cut(s) 847, 1896
BsmI GAATGC 4 cut(s) 120, 867, 1575, 1642
BsnI GGCC 4 cut(s) 744, 1592, 2933, 2944
Bso31I GGTCTC 2 cut(s) 193, 1184
Bsp119I TTCGAA 1 cut(s) 2077
Bsp1286I GDGCHC 3 cut(s) 130, 1458, 2586
Bsp13I TCCGGA 1 cut(s) 352
Bsp1407I TGTACA 2 cut(s) 736, 1657
BspACI CCGC 6 cut(s) 470, 1139, 1145, 2352, 2441, 2930
BspANI GGCC 4 cut(s) 744, 1592, 2933, 2944
BspCNI CTCAG 4 cut(s) 334, 1502, 2309, 2572
BspEI TCCGGA 1 cut(s) 352
BspLI GGNNCC 6 cut(s) 65, 535, 717, 781, 2612, 2707
BspMAI CTGCAG 3 cut(s) 577, 1678, 2146
BspOI GCTAGC 1 cut(s) 1791
BspPI GGATC 4 cut(s) 44, 1254, 1285, 1411
BspT104I TTCGAA 1 cut(s) 2077
BspT107I GGYRCC 2 cut(s) 715, 2705
BspTNI GGTCTC 2 cut(s) 193, 1184
BsrDI GCAATG 2 cut(s) 1248, 2682
BsrFI RCCGGY 2 cut(s) 718, 2566
BsrGI TGTACA 2 cut(s) 736, 1657
BsrI ACTGG 6 cut(s) 930, 1342, 1450, 1692, 2031, 2209
BssAI RCCGGY 2 cut(s) 718, 2566
BssECI CCNNGG 4 cut(s) 1053, 1875, 2529, 2856
BssNAI GTATAC 1 cut(s) 2969
BssT1I CCWWGG 3 cut(s) 1053, 1875, 2529
Bst1107I GTATAC 1 cut(s) 2969
Bst2UI CCWGG 1 cut(s) 2761
Bst4CI ACNGT 9 cut(s) 448, 676, 1651, 1745, 1852, 2066, 2644, 2661, 2857
Bst6I CTCTTC 3 cut(s) 196, 1559, 1625
BstAPI GCANNNNNTGC 1 cut(s) 1609
BstAUI TGTACA 2 cut(s) 736, 1657
BstBI TTCGAA 1 cut(s) 2077
BstC8I GCNNGC 6 cut(s) 30, 41, 546, 720, 1789, 2350
BstDEI CTNAG 6 cut(s) 342, 460, 1489, 2296, 2580, 2867
BstDSI CCRYGG 1 cut(s) 2856
BstEII GGTNACC 1 cut(s) 1336
BstF5I GGATG 6 cut(s) 453, 691, 872, 888, 1063, 2320
BstH2I RGCGCY 2 cut(s) 1119, 2217
BstHHI GCGC 2 cut(s) 1118, 2216
BstMAI GTCTC 3 cut(s) 193, 1184, 1262
BstMWI GCNNNNNNNGC 5 cut(s) 1238, 1609, 1925, 2222, 2441
BstNI CCWGG 1 cut(s) 2761
BstNSI RCATGY 4 cut(s) 28, 32, 43, 2352
BstPI GGTNACC 1 cut(s) 1336
BstSCI CCNGG 1 cut(s) 2759
BstSFI CTRYAG 5 cut(s) 573, 1674, 2142, 2843, 2899
BstSLI GKGCMC 2 cut(s) 130, 1458
BstV1I GCAGC 5 cut(s) 1098, 1129, 1660, 1796, 2156
BstV2I GAAGAC 1 cut(s) 2130
BstX2I RGATCY 3 cut(s) 250, 1246, 1277
BstXI CCANNNNNNTGG 2 cut(s) 1159, 2952
BstYI RGATCY 3 cut(s) 250, 1246, 1277
BstZ17I GTATAC 1 cut(s) 2969
BsuI GTATCC 1 cut(s) 2013
BsuRI GGCC 4 cut(s) 744, 1592, 2933, 2944
BtgI CCRYGG 1 cut(s) 2856
BtgZI GCGATG 1 cut(s) 2182
BtsCI GGATG 6 cut(s) 453, 691, 872, 888, 1063, 2320
BtsI GCAGTG 4 cut(s) 1989, 2061, 2205, 2835
Cac8I GCNNGC 6 cut(s) 30, 41, 546, 720, 1789, 2350
CaiI CAGNNNCTG 1 cut(s) 2204
CfoI GCGC 2 cut(s) 1118, 2216
Cfr10I RCCGGY 2 cut(s) 718, 2566
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 6 cut(s) 201, 522, 737, 1311, 1658, 2632
CspAI ACCGGT 1 cut(s) 2566
CviQI GTAC 6 cut(s) 201, 522, 737, 1311, 1658, 2632
DdeI CTNAG 6 cut(s) 342, 460, 1489, 2296, 2580, 2867
DraIII CACNNNGTG 1 cut(s) 894
DrdI GACNNNNNNGTC 1 cut(s) 1890
DseDI GACNNNNNNGTC 1 cut(s) 1890
EaeI YGGCCR 2 cut(s) 2931, 2942
Eam1104I CTCTTC 3 cut(s) 196, 1559, 1625
EarI CTCTTC 3 cut(s) 196, 1559, 1625
Eco130I CCWWGG 3 cut(s) 1053, 1875, 2529
Eco147I AGGCCT 1 cut(s) 1592
Eco24I GRGCYC 1 cut(s) 2586
Eco31I GGTCTC 2 cut(s) 193, 1184
Eco32I GATATC 1 cut(s) 2782
Eco47I GGWCC 1 cut(s) 214
Eco47III AGCGCT 1 cut(s) 1117
Eco57I CTGAAG 3 cut(s) 1271, 2029, 2313
Eco91I GGTNACC 1 cut(s) 1336
EcoO65I GGTNACC 1 cut(s) 1336
EcoRI GAATTC 3 cut(s) 324, 368, 2265
EcoRII CCWGG 1 cut(s) 2759
EcoRV GATATC 1 cut(s) 2782
EcoT14I CCWWGG 3 cut(s) 1053, 1875, 2529
EcoT22I ATGCAT 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 2586
ErhI CCWWGG 3 cut(s) 1053, 1875, 2529
FalI AAGNNNNNCTT 2 cut(s) 2768, 2800
FaqI GGGAC 2 cut(s) 847, 1896
FbaI TGATCA 1 cut(s) 2424
FblI GTMKAC 2 cut(s) 759, 2968
Fnu4HI GCNGC 9 cut(s) 471, 1087, 1140, 1143, 1674, 1785, 2145, 2442, 2931
FokI GGATG 6 cut(s) 440, 698, 859, 895, 1070, 2327
FriOI GRGCYC 1 cut(s) 2586
Fsp4HI GCNGC 9 cut(s) 471, 1087, 1140, 1143, 1674, 1785, 2145, 2442, 2931
FspBI CTAG 4 cut(s) 60, 998, 1788, 2513
GlaI GCGC 2 cut(s) 1117, 2215
GluI GCNGC 9 cut(s) 471, 1087, 1140, 1143, 1674, 1785, 2145, 2442, 2931
GsaI CCCAGC 2 cut(s) 57, 2231
GsuI CTGGAG 2 cut(s) 913, 980
HaeII RGCGCY 2 cut(s) 1119, 2217
HaeIII GGCC 4 cut(s) 744, 1592, 2933, 2944
HapII CCGG 5 cut(s) 185, 353, 719, 1798, 2567
HhaI GCGC 2 cut(s) 1118, 2216
Hin6I GCGC 2 cut(s) 1116, 2214
HinP1I GCGC 2 cut(s) 1116, 2214
HindIII AAGCTT 3 cut(s) 1377, 2153, 2765
HpaII CCGG 5 cut(s) 185, 353, 719, 1798, 2567
HphI GGTGA 5 cut(s) 911, 1348, 1751, 1966, 2584
Hpy166II GTNNAC 5 cut(s) 214, 385, 760, 1456, 2969
Hpy188I TCNGA 8 cut(s) 7, 310, 670, 813, 1251, 1390, 1437, 2299
Hpy188III TCNNGA 8 cut(s) 353, 697, 959, 1172, 1719, 1913, 2069, 2650
Hpy8I GTNNAC 5 cut(s) 214, 385, 760, 1456, 2969
HpyCH4III ACNGT 9 cut(s) 448, 676, 1651, 1745, 1852, 2066, 2644, 2661, 2857
HpyCH4IV ACGT 3 cut(s) 381, 893, 955
HpyF10VI GCNNNNNNNGC 5 cut(s) 1238, 1609, 1925, 2222, 2441
HpyF3I CTNAG 6 cut(s) 342, 460, 1489, 2296, 2580, 2867
HpySE526I ACGT 3 cut(s) 381, 893, 955
HspAI GCGC 2 cut(s) 1116, 2214
Kpn2I TCCGGA 1 cut(s) 352
KroI GCCGGC 1 cut(s) 718
KroNI GCCGGC 1 cut(s) 720
Ksp22I TGATCA 1 cut(s) 2424
LmnI GCTCC 3 cut(s) 69, 1670, 2051
Lsp1109I GCAGC 5 cut(s) 1098, 1129, 1660, 1796, 2156
LweI GCATC 4 cut(s) 328, 2159, 2212, 3003
MaeI CTAG 4 cut(s) 60, 998, 1788, 2513
MaeII ACGT 3 cut(s) 381, 893, 955
MaeIII GTNAC 8 cut(s) 611, 868, 1282, 1336, 1703, 1739, 2200, 2851
MflI RGATCY 3 cut(s) 250, 1246, 1277
MhlI GDGCHC 3 cut(s) 130, 1458, 2586
MlsI TGGCCA 1 cut(s) 2944
MluNI TGGCCA 1 cut(s) 2944
MlyI GAGTC 3 cut(s) 920, 1716, 1788
MmeI TCCRAC 2 cut(s) 38, 1523
Mox20I TGGCCA 1 cut(s) 2944
Mph1103I ATGCAT 1 cut(s) 30
MroI TCCGGA 1 cut(s) 352
MroNI GCCGGC 1 cut(s) 718
MroXI GAANNNNTTC 1 cut(s) 818
MscI TGGCCA 1 cut(s) 2944
MseI TTAA 8 cut(s) 69, 977, 1533, 1896, 2688, 2718, 2754, 2961
MslI CAYNNNNRTG 6 cut(s) 23, 27, 566, 852, 1157, 2498
Msp20I TGGCCA 1 cut(s) 2944
MspA1I CMGCKG 1 cut(s) 2147
MspI CCGG 5 cut(s) 185, 353, 719, 1798, 2567
MspR9I CCNGG 1 cut(s) 2761
Mva1269I GAATGC 4 cut(s) 120, 867, 1575, 1642
MvaI CCWGG 1 cut(s) 2761
MwoI GCNNNNNNNGC 5 cut(s) 1238, 1609, 1925, 2222, 2441
NaeI GCCGGC 1 cut(s) 720
NgoMIV GCCGGC 1 cut(s) 718
NheI GCTAGC 1 cut(s) 1787
NlaIV GGNNCC 6 cut(s) 65, 535, 717, 781, 2612, 2707
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 4 cut(s) 1336, 1739, 2200, 2851
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 4 cut(s) 28, 32, 43, 2352
NspV TTCGAA 1 cut(s) 2077
PaeI GCATGC 3 cut(s) 32, 43, 2352
PceI AGGCCT 1 cut(s) 1592
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 4 cut(s) 120, 867, 1575, 1642
PdiI GCCGGC 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 7 cut(s) 8, 360, 507, 764, 814, 1472, 1598
PflMI CCANNNNNTGG 1 cut(s) 2940
PinAI ACCGGT 1 cut(s) 2566
PkrI GCNGC 9 cut(s) 472, 1088, 1141, 1144, 1675, 1786, 2146, 2443, 2932
PleI GAGTC 3 cut(s) 920, 1716, 1788
PpsI GAGTC 3 cut(s) 920, 1716, 1788
PsiI TTATAA 1 cut(s) 2306
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 2759
PspEI GGTNACC 1 cut(s) 1336
PspFI CCCAGC 2 cut(s) 53, 2227
PspGI CCWGG 1 cut(s) 2759
PspN4I GGNNCC 6 cut(s) 65, 535, 717, 781, 2612, 2707
PspPI GGNCC 1 cut(s) 214
PstI CTGCAG 3 cut(s) 577, 1678, 2146
PstNI CAGNNNCTG 1 cut(s) 2204
PsuI RGATCY 3 cut(s) 250, 1246, 1277
PvuII CAGCTG 1 cut(s) 2147
RsaI GTAC 6 cut(s) 202, 523, 738, 1312, 1659, 2633
RsaNI GTAC 6 cut(s) 201, 522, 737, 1311, 1658, 2632
RseI CAYNNNNRTG 6 cut(s) 23, 27, 566, 852, 1157, 2498
SaqAI TTAA 8 cut(s) 69, 977, 1533, 1896, 2688, 2718, 2754, 2961
SatI GCNGC 9 cut(s) 471, 1087, 1140, 1143, 1674, 1785, 2145, 2442, 2931
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 3 cut(s) 920, 1716, 1788
ScrFI CCNGG 1 cut(s) 2761
SduI GDGCHC 3 cut(s) 130, 1458, 2586
SfaNI GCATC 4 cut(s) 328, 2159, 2212, 3003
SfcI CTRYAG 5 cut(s) 573, 1674, 2142, 2843, 2899
SfuI TTCGAA 1 cut(s) 2077
SgrAI CRCCGGYG 1 cut(s) 2566
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 6 cut(s) 23, 27, 566, 852, 1157, 2498
SmlI CTYRAG 3 cut(s) 302, 2024, 2622
SmoI CTYRAG 3 cut(s) 302, 2024, 2622
SphI GCATGC 3 cut(s) 32, 43, 2352
SseBI AGGCCT 1 cut(s) 1592
SsiI CCGC 6 cut(s) 470, 1139, 1145, 2352, 2441, 2930
SspI AATATT 3 cut(s) 703, 1361, 1984
SspMI CTAG 4 cut(s) 60, 998, 1788, 2513
StuI AGGCCT 1 cut(s) 1592
StyD4I CCNGG 1 cut(s) 2759
StyI CCWWGG 3 cut(s) 1053, 1875, 2529
TaaI ACNGT 9 cut(s) 448, 676, 1651, 1745, 1852, 2066, 2644, 2661, 2857
TaiI ACGT 3 cut(s) 384, 896, 958
TaqI TCGA 3 cut(s) 859, 1033, 2077
TatI WGTACW 4 cut(s) 200, 521, 736, 1657
TauI GCSGC 4 cut(s) 473, 1142, 2444, 2933
TfiI GAWTC 7 cut(s) 8, 360, 507, 764, 814, 1472, 1598
Tru1I TTAA 8 cut(s) 69, 977, 1533, 1896, 2688, 2718, 2754, 2961
Tru9I TTAA 8 cut(s) 69, 977, 1533, 1896, 2688, 2718, 2754, 2961
TseFI GTSAC 4 cut(s) 1336, 1739, 2200, 2851
TseI GCWGC 5 cut(s) 1086, 1142, 1673, 1784, 2144
Tsp45I GTSAC 4 cut(s) 1336, 1739, 2200, 2851
TspGWI ACGGA 4 cut(s) 404, 556, 865, 2327
Van91I CCANNNNNTGG 1 cut(s) 2940
VneI GTGCAC 1 cut(s) 1454
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 7 cut(s) 324, 368, 970, 2072, 2265, 2861, 2873
XceI RCATGY 4 cut(s) 28, 32, 43, 2352
XcmI CCANNNNNNNNNTGG 1 cut(s) 1159
XmiI GTMKAC 2 cut(s) 759, 2968
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 4 cut(s) 60, 998, 1788, 2513
ZrmI AGTACT 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.