RchiOBHm_Chr6g0264011

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
19124711 .. 19126389
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23679

Sequence Viewer

Length: 516 bp
ATGGTCACTGGAGACCATTTTTTGACTGCAAAAGCAATCGCGTTAGAGTGTGGAATTATTTCTGATAAAGATACTACTGAGCCTAATATCATTGAAGGAAAAACATTCCATGAATTATCTGAAAAAGAAAGAGAAGAATGTGCAAATAATATAAAGGTAATGTGGAGATCTTACCCGAATGACAAGTTATTGCTTGTGCAAGCATTACGGAAGGGGGCATATGTTGTTGCAGTAACAGGAGATGACACTAATGATGCTCCTGCCCTTCATGAGGCAATATCTGGTCTATCTATGGGCATTCAAGGAACTGACGTTGCAAAAGAAAGTTCGGATATCATTATCTTGGATGATAATTTTGCTTCTGTTGTAAAGGTGAGAAAAGTATCCTTCACTTTCACAAGAAGTTATCCAAAGTCTTGGTATCTTTCTTTCCTTTTTTACTGCTGTGCTTCAGTTTTGTTTTCACAGCAATTAGTTACTTTTGCGTTTAGTTTCATTAACATAAAATGGATGTAA

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

5.36

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 2 cut(s) 95, 302
Alw26I GTCTC 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 385
BciVI GTATCC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 6
BfuI GTATCC 1 cut(s) 394
BglII AGATCT 1 cut(s) 167
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 352, 516
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 6
BsmI GAATGC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 6
Bsp143I GATC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 13
BssMI GATC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 2 cut(s) 352, 516
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 1 cut(s) 167
BstUI CGCG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 417
BstYI RGATCY 1 cut(s) 167
BsuI GTATCC 1 cut(s) 394
BtsCI GGATG 2 cut(s) 352, 516
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 201
CciI TCATGA 1 cut(s) 268
CviAII CATG 2 cut(s) 110, 269
CviJI RGCY 1 cut(s) 82
CviKI_1 RGCY 1 cut(s) 82
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 6
Eco32I GATATC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoRV GATATC 1 cut(s) 334
FaeI CATG 2 cut(s) 113, 272
FaiI YATR 7 cut(s) 111, 152, 220, 222, 270, 293, 503
FatI CATG 2 cut(s) 109, 268
FauNDI CATATG 1 cut(s) 220
FokI GGATG 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 30
Hin1II CATG 2 cut(s) 113, 272
HphI GGTGA 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 64, 121, 331
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 89, 205, 275, 397
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 5 cut(s) 29, 143, 199, 230, 317
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 2 cut(s) 113, 272
Kzo9I GATC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 3 cut(s) 222, 267, 273
LweI GCATC 1 cut(s) 244
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 4, 232, 475
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 1 cut(s) 146
MflI RGATCY 1 cut(s) 167
MluCI AATT 4 cut(s) 54, 113, 352, 470
MnlI CCTC 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 297
MvnI CGCG 1 cut(s) 41
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 167
NlaIII CATG 2 cut(s) 113, 272
NmuCI GTSAC 1 cut(s) 4
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 167
SaqAI TTAA 1 cut(s) 498
Sau3AI GATC 1 cut(s) 167
SetI ASST 3 cut(s) 159, 315, 375
SfaNI GCATC 1 cut(s) 244
Sse9I AATT 4 cut(s) 54, 113, 352, 470
TaiI ACGT 1 cut(s) 315
TasI AATT 4 cut(s) 54, 113, 352, 470
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 126, 257, 484
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 13
XagI CCTNNNNNAGG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.