Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

19383812 .. 19390994

Gene Structure 7183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG128500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGTCCTACTCTCACAGGCCGATGTCAAGGTCGTATGGCCGCCACCACCACGTCGACATAATGTCCAGCACCAATGCCCTTCTGCCAGGCGGCGAGTTCGTCGGCTACTCGAAGGGCCCATTCGATGTTGTTGACACGAAGAAGGCTCCTCTCCAAGCACTCCTCCAATGGAGGGAGTGTTTTAAAAATGTAATTAATGGCATGGCGGAACGCAGTTTGCGAACCTTTGCCATTGCAAACAGAGAAATTAAATCGACAGATATTCCTGAGGGAGAGAATTCAAGACAATGGGCTTTACTTGAAAATGAGTTACTGTTCCTTGCTGTTGTGGGTATAAAGGTAATGTGGAGATCTTACCCGAATGACAAGTTATTGCTTGTGCAAGCATTACGGAAGGGGGCAGATGTTGTTGCAGTAACAGGAGATGACACTAATGATGCTTCTGCCCTTCATGAGGCAGATATTGGTCTATCTATGGGCATTCAAGGAACTGAAGTTGCAAAAGAAAGTTCGGATATCAGTATCTTGGATGATAATTTTGCTTCTGTTGTAAAGGTTGATTGCTGGGGACGTTCTGTGTATGCAAATATTCAGAAATTTATCCAATTCCAGCTAACTGCTAACGTTGCTGCTCTTAAAATTAATATTGTTGCAGCAATATCCTTCGGTTGTGTTCCTTTAAATGCCATACAGCTTCTGTGGATTAACTTGATCATTGTTACTCTAGGAGCACTTGCATTAGCAACTGAACCACCTACAGACGACCTTATGCATAGAACACCAGTTAGCAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

266

Amino Acids

29.26

Weight (kDa)

6.31

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	226 - 265	1.9e-11	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	57
AciI	CCGC	3 cut(s)	43, 93, 209
AclI	AACGTT	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	280, 599
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	175, 457
AgsI	TTSAA	3 cut(s)	285, 305, 488
AhdI	GACNNNNNGTC	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	616, 697
AluI	AGCT	2 cut(s)	616, 697
Alw21I	GWGCWC	1 cut(s)	736
AlwNI	CAGNNNCTG	1 cut(s)	700
AoxI	GGCC	3 cut(s)	20, 40, 118
ApaI	GGGCCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	632, 656
ApoI	RAATTY	2 cut(s)	280, 599
AseI	ATTAAT	2 cut(s)	198, 645
AspS9I	GGNCC	2 cut(s)	118, 119
AxyI	CCTNAGG	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	2 cut(s)	619, 668
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	714
BfaI	CTAG	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	759
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	4 cut(s)	43, 94, 633, 657
BlsI	GCNGC	4 cut(s)	44, 95, 634, 658
Bme1390I	CCNGG	1 cut(s)	90
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	118, 119
BmiI	GGNNCC	2 cut(s)	120, 150
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 457
Bse1I	ACTGG	1 cut(s)	785
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	175, 457
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	2 cut(s)	141, 155
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	619, 668
BseYI	CCCAGC	1 cut(s)	567
BshFI	GGCC	3 cut(s)	22, 42, 120
BsiHKAI	GWGCWC	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	175, 457
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	3 cut(s)	22, 42, 120
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	122, 736
Bsp143I	GATC	2 cut(s)	353, 714
BspACI	CCGC	3 cut(s)	43, 93, 209
BspANI	GGCC	3 cut(s)	22, 42, 120
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	120, 150
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	785
BssMI	GATC	2 cut(s)	353, 714
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	2 cut(s)	356, 717
BstMBI	GATC	2 cut(s)	353, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	759
BstSLI	GKGCMC	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	619, 668
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	22, 42, 120
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	700
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	118, 119
CviAII	CATG	2 cut(s)	205, 455
CviJI	RGCY	8 cut(s)	22, 42, 108, 120, 149, 296, 616, 697
CviKI_1	RGCY	8 cut(s)	22, 42, 108, 120, 149, 296, 616, 697
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	355, 716
DpnII	GATC	2 cut(s)	353, 714
DraI	TTTAAA	2 cut(s)	187, 684
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	516
Eco81I	CCTNAGG	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	208, 458
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	2 cut(s)	204, 454
FbaI	TGATCA	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	43, 94, 633, 657
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	43, 94, 633, 657
FspBI	CTAG	1 cut(s)	728
GluI	GCNGC	4 cut(s)	43, 94, 633, 657
GsaI	CCCAGC	1 cut(s)	571
HaeIII	GGCC	3 cut(s)	22, 42, 120
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	208, 458
HincII	GTYRAC	2 cut(s)	58, 136
HindII	GTYRAC	2 cut(s)	58, 136
Hpy166II	GTNNAC	2 cut(s)	58, 136
Hpy188I	TCNGA	2 cut(s)	517, 597
Hpy188III	TCNNGA	3 cut(s)	269, 285, 455
Hpy8I	GTNNAC	2 cut(s)	58, 136
Hpy99I	CGWCG	2 cut(s)	59, 107
HpyAV	CCTTC	7 cut(s)	92, 109, 139, 391, 461, 676, 789
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	3 cut(s)	54, 574, 627
HpyCH4V	TGCA	8 cut(s)	239, 385, 416, 503, 587, 656, 740, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	3 cut(s)	54, 574, 627
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	208, 458
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	2 cut(s)	353, 714
LmnI	GCTCC	2 cut(s)	154, 731
LpnPI	CCDG	8 cut(s)	4, 75, 82, 102, 282, 408, 553, 626
Lsp1109I	GCAGC	2 cut(s)	619, 668
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	3 cut(s)	54, 574, 627
MaeIII	GTNAC	3 cut(s)	312, 418, 721
MalI	GATC	2 cut(s)	355, 716
MboI	GATC	2 cut(s)	353, 714
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	122, 736
MluCI	AATT	7 cut(s)	195, 249, 280, 538, 599, 608, 642
MnlI	CCTC	5 cut(s)	162, 168, 176, 265, 451
Mph1103I	ATGCAT	1 cut(s)	777
MseI	TTAA	7 cut(s)	186, 198, 252, 639, 645, 683, 708
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	2 cut(s)	353, 714
NlaIII	CATG	2 cut(s)	208, 458
NlaIV	GGNNCC	2 cut(s)	120, 150
NsiI	ATGCAT	1 cut(s)	777
PagI	TCATGA	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	1 cut(s)	483
PkrI	GCNGC	4 cut(s)	44, 95, 634, 658
PshBI	ATTAAT	2 cut(s)	198, 645
Psp1406I	AACGTT	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	120, 150
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	118, 119
PstNI	CAGNNNCTG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	7 cut(s)	186, 198, 252, 639, 645, 683, 708
SatI	GCNGC	4 cut(s)	43, 94, 633, 657
Sau3AI	GATC	2 cut(s)	353, 714
Sau96I	GGNCC	2 cut(s)	118, 119
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	122, 736
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	759
Sse9I	AATT	7 cut(s)	195, 249, 280, 538, 599, 608, 642
SsiI	CCGC	3 cut(s)	43, 93, 209
SspI	AATATT	2 cut(s)	592, 649
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	3 cut(s)	57, 577, 630
TaqI	TCGA	4 cut(s)	57, 113, 126, 257
TasI	AATT	7 cut(s)	195, 249, 280, 538, 599, 608, 642
TauI	GCSGC	2 cut(s)	45, 96
Tru1I	TTAA	7 cut(s)	186, 198, 252, 639, 645, 683, 708
Tru9I	TTAA	7 cut(s)	186, 198, 252, 639, 645, 683, 708
TseI	GCWGC	2 cut(s)	632, 656
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	409
VspI	ATTAAT	2 cut(s)	198, 645
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	2 cut(s)	280, 599
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.