RchiOBHm_Chr4g0388521

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
3728187 .. 3731279
3093 bp
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UTR
Exon/CDS
Intron
PRQ36173

Sequence Viewer

Length: 3093 bp
ATGAGTAGGCCAACCTTCAGTGCCCTGCATGAAAAAGTGGGAAGCAATATTGGGTTGATTCTTGATGTTCCGAGAAGTAGTCTTGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCATTACCATCTATTGCTCTAGAGCCTTCCTCTCTTTACGACCTTCTACTCTTCCCAAACATACCAACTCTACATTCATATCTCGCGCACACTCTTACTCCGTTGTTAGAGTCGAGCCAGTCATGGTCCCAGCCATTAATGGATTCAAAGCGGACCAAAAAAGCTTCACTGACCTTGTGAAGGAGAAAAATCTCAAGGAGCTCTTGGAGCTTGGAGGGGTTGAAGAAGTAGCATCAGCTCTCAAAACTGATGCAGAGCATGGAATCAATGGTGATGATGCTGAAGACATTGCACGCAGGCATGAAGCATTTGGTTCCAACACATACAAGAAACCGCCAAAGCAAGGATTCCTTCATTTTGTGTGGGAAGCCTTCAAAGACCTCACAATTCTCATTCTTTTAGGTTGTGCTGCGCTCTCTCTTGGTTTTGGTATCAAAGAGCATGGATTAAAAGAAGGTTGGATTGATGGTGGAAGCATTTGTCTTGCGGTCATTCTGGTCATTTCTGTTTCAGCCATTAGCAACTACAGACAGAGCAGACAATTTGACAGACTGTCCAAGGTCAGTAGCAATCTCCAAATTGAGGTCGTGAGAAATGGAAGGCGCCAAAAGATTTCAATATTTGAAATTGTGGCTGGTGATGTCATCTGCTTGAAGATTGGAGATCAAGTACCAGCAGATGGATTGCTTCTAGATGGCCATTCTTTATCAGTAGATGAATCAAGCATGACAGGGGAGAGCGACCATGTTGAGGTAAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATCGCTGATGGTTATGGCCGGATGCTTGTCACATCAGTAGGGATGAACACGAACTGGGGTGAAATGATGAGCCAAATCAGCCAAGACAACAATGAAAAGACACCTCTGCAAGCACGTTTAGACAATCTAACTTCGTCCATAGGTAAAGTTGGTCTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCCGATACTTCACAGGGAATACAGAGAATGAGAATGGAAACAGAGAGTACAATGGCAGCAAGACAAAATCTGATGACATAATAAATGCCGTCATTGGGATTGTAGCAGCTGCCGTTACAATTGTTGTGGTGGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGTCGATAACGCAATGGTGCGGAAGCTCTCTGCTTGTGAGACGATGGGATCTGCTACAACAATTTGTACCGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTGACTAAGTTTTGGTTGGGGAAGAAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTATGTTCTCGACTTGATCCAAGAAGGGGTTGCTCTCAATACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCCGAAGTTGAGATCTCTGGCAGTCCAACTGAAAAAGCCATTCTTTCATGGGCGGTACATGGGTCAAAGATGGATATGGAGGAAGTGATGAAGACTTGTAGCATTCTCCACGTCGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTGGTGAAGAGAAAGGCAGATAACTCCAGCCATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGCAATGTGCACAAGTTACTACAATGCGTCTGGACTTGTTAAGGATATGGAAGAGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGCCTCAGATGCATAGCGTTTGCACATAAACAAGTTCCAGCAGAAGAGCGACTAAATGCAGACCAGAAATTTGTGCTAAAGGAAGATGGATTAACCCTATTGGGACTTGTGGGTCTTAAGGATCCATGCCGTCCAGGTGTGAAGAAAGCAGTTGAAGAATGTCAATATGCAGGGGTGAATGTCAAAATGATTACTGGCGACAATATTTTCACCGCAAAAGCCATAGCTACTGAATGTGGGATACTCGGGGCTAGTCAGGACATGTTTGGAGCAGTTATTGAAGGTGTGGAATTCCGCAACTACACGCCAGAAGAGAGACTGAAGAAAGTTGACAAAATTTGTGTGATGGCAAGGTCTTCTCCTTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTTACCGGTGACGGCACCAATGATGCACTGGCATTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAAAGCTCGGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCTACAGTTTTGATGTGGGGAAGATGCGTGTACAATAATATCCAGAAGTTCATCCAATTCCAGCTCACTGTCAATGTTGCAGCTCTCGTGATCAACTTTGTAGCAGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTGAACTTGATCATGGACACACTTGGAGCTCTTGCTCTAGCCACCGAAAAACCAACAAGAGAACTTATGGAGCAGCCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAGATAACTGTTCTCTTGATCTTACAATTCAGAGGCAAAGCAATCTTCGGTGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTATGCCAGATCTTTAATGAGTTCAATGCAAGAAAGCTAGAGAAGAAGAATGTCTTCAAGGGAATACACACCAACAAGTTGTTTATGGGGATCATTGCGGTGACAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATTGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAATCAAGTGTATACCTGTTCCAGAGAAACCCATATTCAGCTATCTGAAGATGAAGAAAAAATAA

Protein Analysis

1030

Amino Acids

113.11

Weight (kDa)

8.41

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 109 - 178 1.6e-15 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 232 - 329 2.2e-21 P-type ATPase actuator domain
Hydrolase PF00702 452 - 773 3e-14 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 492 - 663 2e-28 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 844 - 1013 2.7e-48 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1965
Acc36I ACCTGC 1 cut(s) 2513
AccB1I GGYRCC 2 cut(s) 717, 2285
AccB7I CCANNNNNTGG 1 cut(s) 794
AccI GTMKAC 2 cut(s) 1246, 3040
AccII CGCG 1 cut(s) 201
AciI CCGC 8 cut(s) 266, 449, 602, 1315, 1589, 2067, 2149, 2900
AclWI GGATC 5 cut(s) 1351, 1474, 1970, 1983, 2900
AcoI YGGCCR 3 cut(s) 811, 925, 3014
AcsI RAATTY 4 cut(s) 1922, 2144, 2190, 2945
AcuI CTGAAG 4 cut(s) 417, 2195, 2385, 2900
AcyI GRCGYC 1 cut(s) 718
AfaI GTAC 9 cut(s) 786, 1148, 1363, 1378, 1520, 1593, 1722, 2438, 2705
AfiI CCNNNNNNNGG 9 cut(s) 295, 458, 697, 794, 865, 1194, 1399, 1489, 2642
AflII CTTAAG 1 cut(s) 1970
AflIII ACRYGT 1 cut(s) 2115
AgeI ACCGGT 1 cut(s) 2276
AhdI GACNNNNNGTC 1 cut(s) 667
AjiI CACGTC 1 cut(s) 1648
AjnI CCWGG 1 cut(s) 1987
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AleI CACNNNNGTG 1 cut(s) 2798
Alw21I GWGCWC 3 cut(s) 318, 1763, 2590
Alw26I GTCTC 2 cut(s) 1328, 2164
Alw44I GTGCAC 1 cut(s) 1759
AlwI GGATC 5 cut(s) 1351, 1474, 1970, 1983, 2900
Ama87I CYCGRG 1 cut(s) 2099
AoxI GGCC 5 cut(s) 8, 811, 925, 1523, 3014
ApaLI GTGCAC 1 cut(s) 1759
ApoI RAATTY 4 cut(s) 1922, 2144, 2190, 2945
ArsI GACNNNNNNTTYG 2 cut(s) 1907, 1939
AseI ATTAAT 1 cut(s) 252
AsiGI ACCGGT 1 cut(s) 2276
Asp700I GAANNNNTTC 2 cut(s) 887, 2855
AspLEI GCGC 4 cut(s) 203, 529, 720, 2656
AspS9I GGNCC 3 cut(s) 241, 268, 1099
AsuII TTCGAA 1 cut(s) 1664
AsuNHI GCTAGC 1 cut(s) 1850
AvaI CYCGRG 1 cut(s) 2099
AvaII GGWCC 3 cut(s) 241, 268, 1099
BaeGI GKGCMC 2 cut(s) 25, 1763
BaeI ACNNNNGTAYC 2 cut(s) 1583, 1616
BalI TGGCCA 2 cut(s) 813, 3016
BamHI GGATCC 1 cut(s) 1975
BanI GGYRCC 2 cut(s) 717, 2285
BanII GRGCYC 2 cut(s) 318, 2590
BauI CACGAG 1 cut(s) 2492
BbsI GAAGAC 4 cut(s) 405, 1634, 2202, 2848
Bbv12I GWGCWC 3 cut(s) 318, 1763, 2590
BceAI ACGGC 4 cut(s) 1172, 1196, 1968, 2299
BciT130I CCWGG 1 cut(s) 1989
BciVI GTATCC 1 cut(s) 2088
BclI TGATCA 3 cut(s) 2379, 2496, 2568
BcoDI GTCTC 2 cut(s) 1328, 2164
BfaI CTAG 8 cut(s) 135, 806, 1527, 1751, 1851, 2106, 2597, 2840
BfmI CTRYAG 2 cut(s) 640, 2409
BfoI RGCGCY 2 cut(s) 721, 2657
BfrI CTTAAG 1 cut(s) 1970
BfuAI ACCTGC 1 cut(s) 2513
BfuI GTATCC 1 cut(s) 2088
BglII AGATCT 2 cut(s) 1548, 2811
Bme1390I CCNGG 1 cut(s) 1989
Bme18I GGWCC 3 cut(s) 241, 268, 1099
BmeRI GACNNNNNGTC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 2099
BmgBI CACGTC 1 cut(s) 1648
BmgT120I GGNCC 3 cut(s) 241, 268, 1099
BmiI GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
BmrFI CCNGG 1 cut(s) 1989
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 7 cut(s) 355, 356, 382, 921, 1853, 2284, 2420
BmtI GCTAGC 1 cut(s) 1854
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 4 cut(s) 405, 1634, 2202, 2848
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 1 cut(s) 1696
Bpu14I TTCGAA 1 cut(s) 1664
BpuEI CTTGAG 3 cut(s) 293, 2679, 2924
BsaHI GRCGYC 1 cut(s) 718
BsaJI CCNNGG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 2276
BsaXI ACNNNNNCTCC 6 cut(s) 197, 227, 768, 798, 1674, 1704
Bsc4I CCNNNNNNNGG 9 cut(s) 295, 458, 697, 794, 865, 1194, 1399, 1489, 2642
Bse118I RCCGGY 1 cut(s) 2276
Bse1I ACTGG 7 cut(s) 233, 968, 1513, 1730, 2053, 2304, 2639
Bse3DI GCAATG 5 cut(s) 402, 1314, 1761, 2246, 2895
BseBI CCWGG 1 cut(s) 1989
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 4 cut(s) 936, 957, 2392, 2457
BseLI CCNNNNNNNGG 9 cut(s) 295, 458, 697, 794, 865, 1194, 1399, 1489, 2642
BseMI GCAATG 5 cut(s) 402, 1314, 1761, 2246, 2895
BseMII CTCAG 2 cut(s) 870, 1873
BseNI ACTGG 7 cut(s) 233, 968, 1513, 1730, 2053, 2304, 2639
BseSI GKGCMC 2 cut(s) 25, 1763
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 5 cut(s) 10, 813, 927, 1525, 3016
BshNI GGYRCC 2 cut(s) 717, 2285
BshTI ACCGGT 1 cut(s) 2276
BsiHKAI GWGCWC 3 cut(s) 318, 1763, 2590
BsiHKCI CYCGRG 1 cut(s) 2099
BsiSI CCGG 2 cut(s) 928, 2277
BslFI GGGAC 5 cut(s) 227, 916, 1971, 2516, 2988
BslI CCNNNNNNNGG 9 cut(s) 295, 458, 697, 794, 865, 1194, 1399, 1489, 2642
BsmAI GTCTC 2 cut(s) 1328, 2164
BsmBI CGTCTC 1 cut(s) 1328
BsmFI GGGAC 5 cut(s) 227, 916, 1971, 2516, 2988
BsmI GAATGC 2 cut(s) 106, 1638
BsnI GGCC 5 cut(s) 10, 813, 927, 1525, 3016
BsoBI CYCGRG 1 cut(s) 2099
Bsp119I TTCGAA 1 cut(s) 1664
Bsp1286I GDGCHC 4 cut(s) 25, 318, 1763, 2590
Bsp1407I TGTACA 3 cut(s) 1518, 1720, 2436
BspACI CCGC 8 cut(s) 266, 449, 602, 1315, 1589, 2067, 2149, 2900
BspANI GGCC 5 cut(s) 10, 813, 927, 1525, 3016
BspCNI CTCAG 2 cut(s) 871, 1872
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
BspMI ACCTGC 1 cut(s) 2513
BspOI GCTAGC 1 cut(s) 1854
BspPI GGATC 5 cut(s) 1351, 1474, 1970, 1983, 2900
BspQI GCTCTTC 1 cut(s) 1893
BspT104I TTCGAA 1 cut(s) 1664
BspT107I GGYRCC 2 cut(s) 717, 2285
BspTI CTTAAG 1 cut(s) 1970
BsrDI GCAATG 5 cut(s) 402, 1314, 1761, 2246, 2895
BsrFI RCCGGY 1 cut(s) 2276
BsrGI TGTACA 3 cut(s) 1518, 1720, 2436
BsrI ACTGG 7 cut(s) 233, 968, 1513, 1730, 2053, 2304, 2639
BssAI RCCGGY 1 cut(s) 2276
BssECI CCNNGG 1 cut(s) 672
BssNAI GTATAC 1 cut(s) 3041
BssNI GRCGYC 1 cut(s) 718
BssSI CACGAG 1 cut(s) 2492
BssT1I CCWWGG 1 cut(s) 672
Bst1107I GTATAC 1 cut(s) 3041
Bst2BI CACGAG 1 cut(s) 2492
Bst2UI CCWGG 1 cut(s) 1989
Bst4CI ACNGT 5 cut(s) 669, 2413, 2476, 2703, 2716
Bst6I CTCTTC 6 cut(s) 171, 1280, 1688, 1797, 1893, 2160
BstACI GRCGYC 1 cut(s) 718
BstAFI CTTAAG 1 cut(s) 1970
BstAUI TGTACA 3 cut(s) 1518, 1720, 2436
BstBI TTCGAA 1 cut(s) 1664
BstC8I GCNNGC 4 cut(s) 409, 413, 1020, 1852
BstDEI CTNAG 3 cut(s) 879, 1407, 1859
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 4 cut(s) 936, 957, 2392, 2457
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 2 cut(s) 721, 2657
BstHHI GCGC 4 cut(s) 203, 529, 720, 2656
BstMAI GTCTC 2 cut(s) 1328, 2164
BstMWI GCNNNNNNNGC 5 cut(s) 322, 987, 1863, 2405, 2519
BstNI CCWGG 1 cut(s) 1989
BstNSI RCATGY 1 cut(s) 2119
BstSCI CCNGG 1 cut(s) 1987
BstSFI CTRYAG 2 cut(s) 640, 2409
BstSLI GKGCMC 2 cut(s) 25, 1763
BstUI CGCG 1 cut(s) 201
BstV2I GAAGAC 4 cut(s) 405, 1634, 2202, 2848
BstX2I RGATCY 4 cut(s) 1343, 1548, 1975, 2811
BstXI CCANNNNNNTGG 1 cut(s) 3024
BstYI RGATCY 4 cut(s) 1343, 1548, 1975, 2811
BstZ17I GTATAC 1 cut(s) 3041
BsuI GTATCC 1 cut(s) 2088
BsuRI GGCC 5 cut(s) 10, 813, 927, 1525, 3016
BtrI CACGTC 1 cut(s) 1648
BtsCI GGATG 4 cut(s) 936, 957, 2392, 2457
BtsIMutI CAGTG 9 cut(s) 25, 282, 876, 1723, 2297, 2472, 2646, 2699, 2767
BveI ACCTGC 1 cut(s) 2513
Cac8I GCNNGC 4 cut(s) 409, 413, 1020, 1852
CfoI GCGC 4 cut(s) 203, 529, 720, 2656
Cfr10I RCCGGY 1 cut(s) 2276
Cfr13I GGNCC 3 cut(s) 241, 268, 1099
CseI GACGC 1 cut(s) 1767
Csp6I GTAC 9 cut(s) 785, 1147, 1362, 1377, 1519, 1592, 1721, 2437, 2704
CspAI ACCGGT 1 cut(s) 2276
CspCI CAANNNNNGTGG 2 cut(s) 1206, 1241
CviQI GTAC 9 cut(s) 785, 1147, 1362, 1377, 1519, 1592, 1721, 2437, 2704
DdeI CTNAG 3 cut(s) 879, 1407, 1859
DinI GGCGCC 1 cut(s) 719
DrdI GACNNNNNNGTC 1 cut(s) 1965
DriI GACNNNNNGTC 1 cut(s) 667
DseDI GACNNNNNNGTC 1 cut(s) 1965
EaeI YGGCCR 3 cut(s) 811, 925, 3014
Eam1104I CTCTTC 6 cut(s) 171, 1280, 1688, 1797, 1893, 2160
Eam1105I GACNNNNNGTC 1 cut(s) 667
EarI CTCTTC 6 cut(s) 171, 1280, 1688, 1797, 1893, 2160
Ecl136II GAGCTC 2 cut(s) 316, 2588
Eco130I CCWWGG 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 1525
Eco24I GRGCYC 2 cut(s) 318, 2590
Eco47I GGWCC 3 cut(s) 241, 268, 1099
Eco53kI GAGCTC 2 cut(s) 316, 2588
Eco57I CTGAAG 4 cut(s) 417, 2195, 2385, 2900
Eco88I CYCGRG 1 cut(s) 2099
EcoICRI GAGCTC 2 cut(s) 316, 2588
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 2144
EcoRII CCWGG 1 cut(s) 1987
EcoT14I CCWWGG 1 cut(s) 672
EcoT22I ATGCAT 2 cut(s) 1868, 2993
EcoT38I GRGCYC 2 cut(s) 318, 2590
EgeI GGCGCC 1 cut(s) 719
EheI GGCGCC 1 cut(s) 719
ErhI CCWWGG 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 1328
FalI AAGNNNNNCTT 8 cut(s) 302, 334, 450, 482, 1563, 1595, 2840, 2872
FaqI GGGAC 5 cut(s) 227, 916, 1971, 2516, 2988
FbaI TGATCA 3 cut(s) 2379, 2496, 2568
FblI GTMKAC 2 cut(s) 1246, 3040
FokI GGATG 4 cut(s) 943, 964, 2399, 2444
FriOI GRGCYC 2 cut(s) 318, 2590
FspBI CTAG 8 cut(s) 135, 806, 1527, 1751, 1851, 2106, 2597, 2840
GlaI GCGC 4 cut(s) 202, 528, 719, 2655
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 1696
HaeII RGCGCY 2 cut(s) 721, 2657
HaeIII GGCC 5 cut(s) 10, 813, 927, 1525, 3016
HapII CCGG 2 cut(s) 928, 2277
HgaI GACGC 1 cut(s) 1767
HhaI GCGC 4 cut(s) 203, 529, 720, 2656
Hin1I GRCGYC 1 cut(s) 718
Hin6I GCGC 4 cut(s) 201, 527, 718, 2654
HinP1I GCGC 4 cut(s) 201, 527, 718, 2654
HincII GTYRAC 1 cut(s) 2185
HindII GTYRAC 1 cut(s) 2185
HindIII AAGCTT 3 cut(s) 277, 1443, 2225
HpaII CCGG 2 cut(s) 928, 2277
Hpy166II GTNNAC 8 cut(s) 1247, 1519, 1723, 1761, 2185, 2437, 2563, 3041
Hpy188I TCNGA 9 cut(s) 72, 1103, 1171, 1383, 1540, 1862, 2371, 2738, 3075
Hpy8I GTNNAC 8 cut(s) 1247, 1519, 1723, 1761, 2185, 2437, 2563, 3041
Hpy99I CGWCG 1 cut(s) 1652
HpyCH4III ACNGT 5 cut(s) 669, 2413, 2476, 2703, 2716
HpyCH4IV ACGT 2 cut(s) 1024, 1647
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 987, 1863, 2405, 2519
HpyF3I CTNAG 3 cut(s) 879, 1407, 1859
HpySE526I ACGT 2 cut(s) 1024, 1647
Hsp92I GRCGYC 1 cut(s) 718
HspAI GCGC 4 cut(s) 201, 527, 718, 2654
KasI GGCGCC 1 cut(s) 717
Ksp22I TGATCA 3 cut(s) 2379, 2496, 2568
LguI GCTCTTC 1 cut(s) 1893
LmnI GCTCC 6 cut(s) 313, 322, 1733, 2123, 2585, 2629
LweI GCATC 7 cut(s) 355, 356, 382, 921, 1853, 2284, 2420
MaeI CTAG 8 cut(s) 135, 806, 1527, 1751, 1851, 2106, 2597, 2840
MaeII ACGT 2 cut(s) 1024, 1647
MaeIII GTNAC 9 cut(s) 874, 937, 1213, 1258, 1402, 1766, 2272, 2279, 2902
MfeI CAATTG 3 cut(s) 1218, 2907, 3018
MflI RGATCY 4 cut(s) 1343, 1548, 1975, 2811
MhlI GDGCHC 4 cut(s) 25, 318, 1763, 2590
MlsI TGGCCA 2 cut(s) 813, 3016
MluNI TGGCCA 2 cut(s) 813, 3016
Mly113I GGCGCC 1 cut(s) 718
MlyI GAGTC 2 cut(s) 234, 1255
MmeI TCCRAC 3 cut(s) 456, 554, 1586
Mox20I TGGCCA 2 cut(s) 813, 3016
Mph1103I ATGCAT 2 cut(s) 1868, 2993
MroXI GAANNNNTTC 2 cut(s) 887, 2855
MscI TGGCCA 2 cut(s) 813, 3016
MseI TTAA 8 cut(s) 252, 563, 1659, 1791, 1946, 1971, 2537, 2817
MslI CAYNNNNRTG 2 cut(s) 2798, 2900
Msp20I TGGCCA 2 cut(s) 813, 3016
MspA1I CMGCKG 1 cut(s) 1208
MspCI CTTAAG 1 cut(s) 1970
MspI CCGG 2 cut(s) 928, 2277
MspR9I CCNGG 1 cut(s) 1989
MunI CAATTG 3 cut(s) 1218, 2907, 3018
Mva1269I GAATGC 2 cut(s) 106, 1638
MvaI CCWGG 1 cut(s) 1989
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 5 cut(s) 322, 987, 1863, 2405, 2519
NarI GGCGCC 1 cut(s) 718
NheI GCTAGC 1 cut(s) 1850
NlaIV GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
NmuCI GTSAC 6 cut(s) 874, 937, 1258, 1402, 2279, 2902
NsiI ATGCAT 2 cut(s) 1868, 2993
NspI RCATGY 1 cut(s) 2119
NspV TTCGAA 1 cut(s) 1664
OliI CACNNNNGTG 1 cut(s) 2798
PceI AGGCCT 1 cut(s) 1525
PciI ACATGT 1 cut(s) 2115
PciSI GCTCTTC 1 cut(s) 1893
PctI GAATGC 2 cut(s) 106, 1638
PdmI GAANNNNTTC 2 cut(s) 887, 2855
PfeI GAWTC 8 cut(s) 58, 258, 378, 462, 833, 883, 1535, 2338
PflMI CCANNNNNTGG 1 cut(s) 794
PinAI ACCGGT 1 cut(s) 2276
PleI GAGTC 2 cut(s) 233, 1255
PluTI GGCGCC 1 cut(s) 721
PpsI GAGTC 2 cut(s) 233, 1255
PscI ACATGT 1 cut(s) 2115
PshBI ATTAAT 1 cut(s) 252
Psp124BI GAGCTC 2 cut(s) 318, 2590
Psp6I CCWGG 1 cut(s) 1987
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 1987
PspN4I GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
PspPI GGNCC 3 cut(s) 241, 268, 1099
PsuI RGATCY 4 cut(s) 1343, 1548, 1975, 2811
PvuII CAGCTG 1 cut(s) 1208
RsaI GTAC 9 cut(s) 786, 1148, 1363, 1378, 1520, 1593, 1722, 2438, 2705
RsaNI GTAC 9 cut(s) 785, 1147, 1362, 1377, 1519, 1592, 1721, 2437, 2704
RseI CAYNNNNRTG 2 cut(s) 2798, 2900
SacI GAGCTC 2 cut(s) 318, 2590
SapI GCTCTTC 1 cut(s) 1893
SaqAI TTAA 8 cut(s) 252, 563, 1659, 1791, 1946, 1971, 2537, 2817
Sau96I GGNCC 3 cut(s) 241, 268, 1099
SchI GAGTC 2 cut(s) 234, 1255
ScrFI CCNGG 1 cut(s) 1989
SduI GDGCHC 4 cut(s) 25, 318, 1763, 2590
SfaNI GCATC 7 cut(s) 355, 356, 382, 921, 1853, 2284, 2420
SfcI CTRYAG 2 cut(s) 640, 2409
SfoI GGCGCC 1 cut(s) 719
SfuI TTCGAA 1 cut(s) 1664
SinI GGWCC 3 cut(s) 241, 268, 1099
SmiMI CAYNNNNRTG 2 cut(s) 2798, 2900
SmlI CTYRAG 4 cut(s) 308, 1970, 2694, 2939
SmoI CTYRAG 4 cut(s) 308, 1970, 2694, 2939
SseBI AGGCCT 1 cut(s) 1525
SsiI CCGC 8 cut(s) 266, 449, 602, 1315, 1589, 2067, 2149, 2900
SspDI GGCGCC 1 cut(s) 717
SspI AATATT 3 cut(s) 49, 735, 2059
SspMI CTAG 8 cut(s) 135, 806, 1527, 1751, 1851, 2106, 2597, 2840
SstI GAGCTC 2 cut(s) 318, 2590
StuI AGGCCT 1 cut(s) 1525
StyD4I CCNGG 1 cut(s) 1987
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 5 cut(s) 669, 2413, 2476, 2703, 2716
TaiI ACGT 2 cut(s) 1027, 1650
TaqI TCGA 5 cut(s) 228, 1299, 1473, 1650, 1664
TatI WGTACW 4 cut(s) 1146, 1518, 1720, 2436
TfiI GAWTC 8 cut(s) 58, 258, 378, 462, 833, 883, 1535, 2338
Tru1I TTAA 8 cut(s) 252, 563, 1659, 1791, 1946, 1971, 2537, 2817
Tru9I TTAA 8 cut(s) 252, 563, 1659, 1791, 1946, 1971, 2537, 2817
TscAI CASTG 9 cut(s) 25, 289, 883, 1730, 2304, 2479, 2646, 2706, 2767
TseFI GTSAC 6 cut(s) 874, 937, 1258, 1402, 2279, 2902
Tsp45I GTSAC 6 cut(s) 874, 937, 1258, 1402, 2279, 2902
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 9 cut(s) 25, 289, 883, 1730, 2304, 2479, 2646, 2706, 2767
Van91I CCANNNNNTGG 1 cut(s) 794
Vha464I CTTAAG 1 cut(s) 1970
VneI GTGCAC 1 cut(s) 1759
VpaK11BI GGWCC 3 cut(s) 241, 268, 1099
VspI ATTAAT 1 cut(s) 252
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 4 cut(s) 1922, 2144, 2190, 2945
XbaI TCTAGA 2 cut(s) 134, 805
XceI RCATGY 1 cut(s) 2119
XcmI CCANNNNNNNNNTGG 1 cut(s) 2296
XmiI GTMKAC 2 cut(s) 1246, 3040
XmnI GAANNNNTTC 2 cut(s) 887, 2855
XspI CTAG 8 cut(s) 135, 806, 1527, 1751, 1851, 2106, 2597, 2840
Zsp2I ATGCAT 2 cut(s) 1868, 2993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.