MD15G1425900.v1.1

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
52665794 .. 52668880
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1425900.v1.1.491

Sequence Viewer

Length: 3087 bp
ATGTCTACCACCCTGCATGCAAAGTTGGCTTGCATTGAAATCGAGCGGCTTTTTGATGTTCCAAAAAGCACTCTTAGCAAACACCAAAGAAAATGGCGTTATGCTTTTGCCACAATCTACTGCTCTAGAGCCTTCAACCTTTCAATACCAAAATACAAAAACACCAAAACATCTCCATCTCCTTCTTATACCGCCATTTCTGTTGAGCCATCATATAGCTTATTCCAAATTGATCAAACTACCCTCACTCACCTTGTCAAGCAGAAAAATCTCAACCAGCTTCAGGAGCTAGGAGGGGTTGAAGAAATTGCCACCGCTCTCAAAACTGACGCAGAGCACGGAGTCCATGGCGGCGATGATCCTGAAGGCGACATTGCGAAAAGACTCAAAGCATTCGGCTCGAACACTTACAAGAAGCCCCCAACAAAGGGGTTCTTCCACTTTGTGTGGGAAGCCTTCAAAGACCTCACAATTCTCATTCTCTTAGGCTGCGCTACGCTTTCTCTCGGCTTGGGAATCAAAGTGCACGGTCTAAAAGATGGATGGATCGATGGCGGAAGCATATTTCTCGCAATCATTCTGGTAATTTCTGTTTCTGCTGTGAGTAATTTTAGACAGAACAGACAGTTTGATAAGTTGTCTAAAGTCAGCGACAATGTCCAAATCGAAGCTGTGAGAGGCGGCAGGCGCCAACAGATTTCGATATTCAAAATTGTAGTTGGTGATGTCATTTGTTTAAAGATCGGAGACCAAGTTCCGGCTGATGGATTGTTTCTAGACGGCCATTCGTTACAAGTAGACGAATCGAGCATGACAGGGGAGAGTGATCATGTCGAAATTAGTCAACACCAGAATCCTTTCTTGTTTTCCGGCACAAAAGTTGCTGATGGCTATGCTCGGATGCTTGTCACCTCTGTTGGAATGAACACGACATGGGGCGAAATGATGAGCCAAATCAGCCGCGACAATGGTGAAGAGACGCCTCTGCAAGCTCGGCTCAACAAGCTAACGTCATCGATTGGTAAAGTCGGTTTGGTAGTTGCATTTTTAGTCCTGATTGTCTTGATGGTTAGGTATTTCACTGGAAATACAGAGGACGAGAATGGAAACCGGGAGTATAATGGCAGCAAGACTAAAGTTGACGACATATTAAACGCGGTTGTAGGGATTGTCGCTGCTGCGGTTACAATTGTTGTGGTGGCAATTCCGGAAGGCCTGCCTCTGGCTGTGACTCTAACGCTTGCGTATTCGATGAAGAGAATGATGGCAGATAAGGCGATGGTGAGGAAGCTTTCTGCTTGTGAGACGATGGGGTCAGCCACCGTCATTTGTACCGATAAAACAGGCACTCTCACCATGAATGAAATGAAGGTGACCAAGTTTTGGCTAGGCGAGGAACCCGTGGAAGAAGAGGCGTATTCGTCCATATCACCTTTTGTTCGTAACTTGATTCATGAAGGGGTTGCTCTGAACACAACCGGGAGTGTGTTCCGGCCTAATTCGGGTTCGGAAATTGAAATCTCGGGTAGTCCTACTGAGAAGGCGATTCTTTCGTGGGCAGTGCATGGGGCGAAGATGGATATGCAGAAAGTGGTGAAGAGTTGCAGCATTCTCTATGTCGAGGCCTTCAATTCACAGAAGAAACGAAGCGGGGTTTTGATGAAGCGGAAGGTGGACGATTCTGTGCAAGCACATTGGAAAGGAGCTGCAGAGATGGTATTAGTAATGTGCACAAGTTACTACAATGCATCCGGAGTGGTTAAAGATATGGATGAGAACGCGAAATTGAAATTTGAGCAGATTATCCAAGGTATGGCGGCAAGCAGCCTCAGATGCATTGCTTTTGCACACACAGAAATTGAGGTACAAGAGCAAGTGGATGATCAAGAACATAAAAATTTGCTAAAAGAAGATGGATTGACATTATTAGGCCTTGTTGGGTTAAAAGATCCATGCCGCCCGGGGGTGAAGAAAGCTGTTGAAGACTGTCAACGTGCAGGGGTGAATGTTAAAATGATCACAGGCGACAATGTGTTCACTGCAAAAGCAATAGCCACAGAATGCGGGATACTCAAGCCCGATCAGGACATGTTCTTCAGCAGCGCAGTGATAGAAGGCATGCAATTTCGGAACTACACACCGGAAGAAAGAATGGAGAAGGTGGACAAAATCTGTGTGATGGCAAGGTCCTCCCCCTTTGACAAGCTTCTCATGGTGCAGTGCTTGAAACAGCTAGGCCATGTGGTGGCGGTGACAGGGGATGGCACAAACGATGCGCCTGCATTGAAAGAAGCTGACATCGGACTTTCCATGGGGATTCAAGGCACAGAAGTCGCGAAAGAGAGCTCGGATATCGTGATCATGGACGACAACTTTTCGTCGGTGGCCACAGTTTTAAGGTGGGGAAGATGTGTTTACGAAAACATCCAGAAGTTCATCCAATTCCAACTCACCGTCAATGTCGCAGCGCTGGTGATCAACTTTGTAGCAGCAATTTCCGCTGGTGAAGTCCCGTTAACAGCTGTTCAGTTACTGTGGGTGAATTTGATCATGGACACACTAGGTGCTCTGGCTCTCGCCACAGAGAAGCCAACAAAAGAGCTCATGAAGAAAAAACCGGTCGGGAGGACGGAACCTCTGATCACCAATATAATGTGGAGGAACCTCCTGCCTCAAGCACTCTACCAGATTGCAATCCTCCTGACATTGCAGTTCAAAGGAAAATCGATCTTCGGTGTGGAGGACAAGGTGAAGGACACACTGATCTTCAACACATTTGTGCTGTGCCAGGTGTTCAATGAGTTCAATGCAAGGAAGCTTGAGAAGAAGAATGTGTTCAGAGGAATCCACACCAACAAGTTGTTTTTGGGAATTATTGGTGTCACAATTTTGCTGCAGGTGGTGATGGTGGAGTTTTTGAAGAAGTTTGCAGATACAGAAAGGTTGAATTGGGGGCAATGGGGTGCTTGTGTTGGCATTGCAGCAGTCTCTTGGCCAATTGGTTGGATTGTCAAGTCGATTCCTGTTCCTGAGACTCCTATTTTCAGCTATCTCAAGATGAAGAAGTCGAAGAAGAACTCTATTTGA

Protein Analysis

1029

Amino Acids

113.28

Weight (kDa)

8.34

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 97 - 168 4.9e-14 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 223 - 319 2.3e-21 P-type ATPase actuator domain
Cation_ATPase PF13246 481 - 654 2e-28 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 621 - 766 4.5e-12 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 837 - 1006 1.3e-49 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2887
AasI GACNNNNNNGTC 1 cut(s) 1312
Acc36I ACCTGC 1 cut(s) 2887
AccB1I GGYRCC 1 cut(s) 687
AccB7I CCANNNNNTGG 3 cut(s) 1383, 1813, 2245
AccBSI CCGCTC 2 cut(s) 46, 317
AccI GTMKAC 2 cut(s) 5, 798
AccII CGCG 4 cut(s) 963, 1157, 1781, 2336
AccIII TCCGGA 2 cut(s) 1207, 1751
AclWI GGATC 3 cut(s) 353, 554, 1943
AcoI YGGCCR 3 cut(s) 781, 2385, 2993
AcsI RAATTY 3 cut(s) 1790, 1897, 2542
AcuI CTGAAG 3 cut(s) 266, 384, 2080
AcyI GRCGYC 2 cut(s) 688, 980
AdeI CACNNNGTG 2 cut(s) 445, 2564
AfaI GTAC 2 cut(s) 1333, 1866
AfeI AGCGCT 1 cut(s) 2469
AflIII ACRYGT 1 cut(s) 2088
AgeI ACCGGT 1 cut(s) 2617
AjnI CCWGG 1 cut(s) 2787
AleI CACNNNNGTG 1 cut(s) 2777
AloI GAACNNNNNNTCC 2 cut(s) 738, 770
Alw21I GWGCWC 6 cut(s) 339, 528, 1733, 2348, 2569, 2604
Alw26I GTCTC 5 cut(s) 741, 971, 1298, 2992, 3026
Alw44I GTGCAC 2 cut(s) 524, 1729
AlwI GGATC 3 cut(s) 353, 554, 1943
AlwNI CAGNNNCTG 1 cut(s) 2533
Ama87I CYCGRG 2 cut(s) 1522, 1960
Aor13HI TCCGGA 2 cut(s) 1207, 1751
Aor51HI AGCGCT 1 cut(s) 2469
AoxI GGCC 8 cut(s) 781, 1213, 1493, 1623, 1930, 2236, 2385, 2993
ApaLI GTGCAC 2 cut(s) 524, 1729
ApoI RAATTY 3 cut(s) 1790, 1897, 2542
AsiGI ACCGGT 1 cut(s) 2617
Asp700I GAANNNNTTC 2 cut(s) 857, 2834
AspLEI GCGC 5 cut(s) 494, 690, 2105, 2278, 2470
AspS9I GGNCC 1 cut(s) 2187
AsuC2I CCSGG 4 cut(s) 1112, 1480, 1961, 1962
AvaI CYCGRG 2 cut(s) 1522, 1960
AvaII GGWCC 1 cut(s) 2187
BaeGI GKGCMC 2 cut(s) 528, 1733
BalI TGGCCA 2 cut(s) 2387, 2995
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 2 cut(s) 2348, 2604
BbsI GAAGAC 1 cut(s) 1989
Bbv12I GWGCWC 6 cut(s) 339, 528, 1733, 2348, 2569, 2604
BceAI ACGGC 1 cut(s) 796
BciT130I CCWGG 1 cut(s) 2789
BciVI GTATCC 1 cut(s) 2061
BclI TGATCA 8 cut(s) 232, 826, 1882, 2016, 2358, 2475, 2547, 2640
BcnI CCSGG 4 cut(s) 1112, 1480, 1961, 1962
BcoDI GTCTC 5 cut(s) 741, 971, 1298, 2992, 3026
BfaI CTAG 6 cut(s) 126, 290, 776, 1388, 2234, 2561
BfmI CTRYAG 2 cut(s) 1707, 2894
BfoI RGCGCY 2 cut(s) 691, 2471
BfuAI ACCTGC 1 cut(s) 2887
BfuI GTATCC 1 cut(s) 2061
Bme1390I CCNGG 5 cut(s) 1112, 1480, 1961, 1962, 2789
Bme18I GGWCC 1 cut(s) 2187
BmeT110I CYCGRG 2 cut(s) 1522, 1960
BmgT120I GGNCC 1 cut(s) 2187
BmiI GGNNCC 4 cut(s) 689, 1398, 2634, 2663
BmrFI CCNGG 5 cut(s) 1112, 1480, 1961, 1962, 2789
BmsI GCATC 4 cut(s) 891, 1757, 1823, 2263
BpiI GAAGAC 1 cut(s) 1989
BpuEI CTTGAG 4 cut(s) 2057, 2658, 2840, 3038
BpuMI CCSGG 4 cut(s) 1112, 1480, 1961, 1962
Bsa29I ATCGAT 3 cut(s) 549, 1016, 2726
BsaBI GATNNNNATC 1 cut(s) 2693
BsaHI GRCGYC 2 cut(s) 688, 980
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 6 cut(s) 346, 1401, 1807, 1960, 1961, 2310
BsaWI WCCGGW 4 cut(s) 1207, 1751, 2140, 2617
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bse118I RCCGGY 1 cut(s) 2617
Bse1I ACTGG 1 cut(s) 1087
Bse3DI GCAATG 5 cut(s) 372, 1836, 2705, 2963, 2976
Bse8I GATNNNNATC 1 cut(s) 2693
BseAI TCCGGA 2 cut(s) 1207, 1751
BseBI CCWGG 1 cut(s) 2789
BseCI ATCGAT 3 cut(s) 549, 1016, 2726
BseDI CCNNGG 6 cut(s) 346, 1401, 1807, 1960, 1961, 2310
BseGI GGATG 8 cut(s) 548, 906, 1748, 1777, 1885, 2266, 2424, 2436
BseJI GATNNNNATC 1 cut(s) 2693
BseMI GCAATG 5 cut(s) 372, 1836, 2705, 2963, 2976
BseMII CTCAG 3 cut(s) 1527, 1843, 3021
BseNI ACTGG 1 cut(s) 1087
BseSI GKGCMC 2 cut(s) 528, 1733
BsgI GTGCAG 2 cut(s) 2016, 2237
Bsh1236I CGCG 4 cut(s) 963, 1157, 1781, 2336
Bsh1285I CGRYCG 1 cut(s) 2622
BshFI GGCC 8 cut(s) 783, 1215, 1495, 1625, 1932, 2238, 2387, 2995
BshNI GGYRCC 1 cut(s) 687
BshTI ACCGGT 1 cut(s) 2617
BshVI ATCGAT 3 cut(s) 549, 1016, 2726
BsiEI CGRYCG 1 cut(s) 2622
BsiHKAI GWGCWC 6 cut(s) 339, 528, 1733, 2348, 2569, 2604
BsiHKCI CYCGRG 2 cut(s) 1522, 1960
BslFI GGGAC 1 cut(s) 2495
BsmAI GTCTC 5 cut(s) 741, 971, 1298, 2992, 3026
BsmBI CGTCTC 2 cut(s) 971, 1298
BsmFI GGGAC 1 cut(s) 2495
BsmI GAATGC 3 cut(s) 392, 1608, 2066
BsnI GGCC 8 cut(s) 783, 1215, 1495, 1625, 1932, 2238, 2387, 2995
Bso31I GGTCTC 1 cut(s) 741
BsoBI CYCGRG 2 cut(s) 1522, 1960
Bsp1286I GDGCHC 6 cut(s) 339, 528, 1733, 2348, 2569, 2604
Bsp13I TCCGGA 2 cut(s) 1207, 1751
Bsp19I CCATGG 2 cut(s) 346, 2310
Bsp68I TCGCGA 1 cut(s) 2336
BspANI GGCC 8 cut(s) 783, 1215, 1495, 1625, 1932, 2238, 2387, 2995
BspCNI CTCAG 3 cut(s) 1528, 1842, 3022
BspDI ATCGAT 3 cut(s) 549, 1016, 2726
BspEI TCCGGA 2 cut(s) 1207, 1751
BspFNI CGCG 4 cut(s) 963, 1157, 1781, 2336
BspHI TCATGA 2 cut(s) 1453, 2604
BspLI GGNNCC 4 cut(s) 689, 1398, 2634, 2663
BspMAI CTGCAG 2 cut(s) 1711, 2898
BspMI ACCTGC 1 cut(s) 2887
BspPI GGATC 3 cut(s) 353, 554, 1943
BspT107I GGYRCC 1 cut(s) 687
BspTNI GGTCTC 1 cut(s) 741
BsrBI CCGCTC 2 cut(s) 46, 317
BsrDI GCAATG 5 cut(s) 372, 1836, 2705, 2963, 2976
BsrFI RCCGGY 1 cut(s) 2617
BsrI ACTGG 1 cut(s) 1087
BssAI RCCGGY 1 cut(s) 2617
BssECI CCNNGG 6 cut(s) 346, 1401, 1807, 1960, 1961, 2310
BssNI GRCGYC 2 cut(s) 688, 980
BssT1I CCWWGG 3 cut(s) 346, 1807, 2310
Bst2UI CCWGG 1 cut(s) 2789
Bst4CI ACNGT 7 cut(s) 530, 627, 1324, 1988, 2392, 2455, 2535
Bst6I CTCTTC 4 cut(s) 969, 1250, 1404, 1592
BstACI GRCGYC 2 cut(s) 688, 980
BstDEI CTNAG 5 cut(s) 74, 484, 1536, 1829, 3030
BstDSI CCRYGG 3 cut(s) 346, 1401, 2310
BstEII GGTNACC 1 cut(s) 1372
BstF5I GGATG 8 cut(s) 548, 906, 1748, 1777, 1885, 2266, 2424, 2436
BstFNI CGCG 4 cut(s) 963, 1157, 1781, 2336
BstH2I RGCGCY 2 cut(s) 691, 2471
BstHHI GCGC 5 cut(s) 494, 690, 2105, 2278, 2470
BstMAI GTCTC 5 cut(s) 741, 971, 1298, 2992, 3026
BstMCI CGRYCG 1 cut(s) 2622
BstNI CCWGG 1 cut(s) 2789
BstNSI RCATGY 3 cut(s) 20, 2092, 2122
BstPI GGTNACC 1 cut(s) 1372
BstSCI CCNGG 5 cut(s) 1110, 1478, 1959, 1960, 2787
BstSFI CTRYAG 2 cut(s) 1707, 2894
BstSLI GKGCMC 2 cut(s) 528, 1733
BstUI CGCG 4 cut(s) 963, 1157, 1781, 2336
BstV2I GAAGAC 1 cut(s) 1989
BstX2I RGATCY 1 cut(s) 1948
BstXI CCANNNNNNTGG 1 cut(s) 3003
BstYI RGATCY 1 cut(s) 1948
Bsu15I ATCGAT 3 cut(s) 549, 1016, 2726
BsuI GTATCC 1 cut(s) 2061
BsuRI GGCC 8 cut(s) 783, 1215, 1495, 1625, 1932, 2238, 2387, 2995
BsuTUI ATCGAT 3 cut(s) 549, 1016, 2726
BtgI CCRYGG 3 cut(s) 346, 1401, 2310
BtgZI GCGATG 2 cut(s) 369, 1292
BtsCI GGATG 8 cut(s) 548, 906, 1748, 1777, 1885, 2266, 2424, 2436
BtsI GCAGTG 4 cut(s) 1566, 2037, 2112, 2225
BtsIMutI CAGTG 6 cut(s) 1080, 1566, 2037, 2112, 2225, 2759
BtuMI TCGCGA 1 cut(s) 2336
BveI ACCTGC 1 cut(s) 2887
CaiI CAGNNNCTG 1 cut(s) 2533
CciI TCATGA 2 cut(s) 1453, 2604
CfoI GCGC 5 cut(s) 494, 690, 2105, 2278, 2470
Cfr10I RCCGGY 1 cut(s) 2617
Cfr13I GGNCC 1 cut(s) 2187
Cfr9I CCCGGG 1 cut(s) 1960
ClaI ATCGAT 3 cut(s) 549, 1016, 2726
CseI GACGC 2 cut(s) 338, 988
Csp6I GTAC 2 cut(s) 1332, 1865
CspAI ACCGGT 1 cut(s) 2617
CspCI CAANNNNNGTGG 2 cut(s) 1176, 1211
CviQI GTAC 2 cut(s) 1332, 1865
DdeI CTNAG 5 cut(s) 74, 484, 1536, 1829, 3030
DinI GGCGCC 1 cut(s) 689
DraI TTTAAA 1 cut(s) 738
DraIII CACNNNGTG 2 cut(s) 445, 2564
DrdI GACNNNNNNGTC 1 cut(s) 1312
DseDI GACNNNNNNGTC 1 cut(s) 1312
EaeI YGGCCR 3 cut(s) 781, 2385, 2993
Eam1104I CTCTTC 4 cut(s) 969, 1250, 1404, 1592
EarI CTCTTC 4 cut(s) 969, 1250, 1404, 1592
EciI GGCGGA 1 cut(s) 570
Ecl136II GAGCTC 2 cut(s) 2346, 2602
Eco130I CCWWGG 3 cut(s) 346, 1807, 2310
Eco147I AGGCCT 3 cut(s) 1215, 1625, 1932
Eco24I GRGCYC 2 cut(s) 2348, 2604
Eco31I GGTCTC 1 cut(s) 741
Eco32I GATATC 1 cut(s) 2353
Eco47I GGWCC 1 cut(s) 2187
Eco47III AGCGCT 1 cut(s) 2469
Eco53kI GAGCTC 2 cut(s) 2346, 2602
Eco57I CTGAAG 3 cut(s) 266, 384, 2080
Eco88I CYCGRG 2 cut(s) 1522, 1960
Eco91I GGTNACC 1 cut(s) 1372
EcoICRI GAGCTC 2 cut(s) 2346, 2602
EcoO109I RGGNCCY 1 cut(s) 2187
EcoO65I GGTNACC 1 cut(s) 1372
EcoRII CCWGG 1 cut(s) 2787
EcoRV GATATC 1 cut(s) 2353
EcoT14I CCWWGG 3 cut(s) 346, 1807, 2310
EcoT22I ATGCAT 2 cut(s) 1750, 1838
EcoT38I GRGCYC 2 cut(s) 2348, 2604
EgeI GGCGCC 1 cut(s) 689
EheI GGCGCC 1 cut(s) 689
ErhI CCWWGG 3 cut(s) 346, 1807, 2310
Esp3I CGTCTC 2 cut(s) 971, 1298
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 2495
FauI CCCGC 2 cut(s) 1643, 2057
FbaI TGATCA 8 cut(s) 232, 826, 1882, 2016, 2358, 2475, 2547, 2640
FblI GTMKAC 2 cut(s) 5, 798
FokI GGATG 8 cut(s) 555, 913, 1735, 1784, 1892, 2273, 2411, 2423
FriOI GRGCYC 2 cut(s) 2348, 2604
FspBI CTAG 6 cut(s) 126, 290, 776, 1388, 2234, 2561
GlaI GCGC 5 cut(s) 493, 689, 2104, 2277, 2469
HaeII RGCGCY 2 cut(s) 691, 2471
HaeIII GGCC 8 cut(s) 783, 1215, 1495, 1625, 1932, 2238, 2387, 2995
HgaI GACGC 2 cut(s) 338, 988
HhaI GCGC 5 cut(s) 494, 690, 2105, 2278, 2470
Hin1I GRCGYC 2 cut(s) 688, 980
Hin6I GCGC 5 cut(s) 492, 688, 2103, 2276, 2468
HinP1I GCGC 5 cut(s) 492, 688, 2103, 2276, 2468
HincII GTYRAC 4 cut(s) 845, 1141, 1991, 2517
HindII GTYRAC 4 cut(s) 845, 1141, 1991, 2517
HindIII AAGCTT 3 cut(s) 1289, 2204, 2816
HpaI GTTAAC 1 cut(s) 2517
Hpy99I CGWCG 1 cut(s) 2383
HpyCH4III ACNGT 7 cut(s) 530, 627, 1324, 1988, 2392, 2455, 2535
HpyCH4IV ACGT 2 cut(s) 1010, 1993
HpyF3I CTNAG 5 cut(s) 74, 484, 1536, 1829, 3030
HpySE526I ACGT 2 cut(s) 1010, 1993
Hsp92I GRCGYC 2 cut(s) 688, 980
HspAI GCGC 5 cut(s) 492, 688, 2103, 2276, 2468
KasI GGCGCC 1 cut(s) 687
Kpn2I TCCGGA 2 cut(s) 1207, 1751
Ksp22I TGATCA 8 cut(s) 232, 826, 1882, 2016, 2358, 2475, 2547, 2640
KspAI GTTAAC 1 cut(s) 2517
LmnI GCTCC 2 cut(s) 286, 1703
LweI GCATC 4 cut(s) 891, 1757, 1823, 2263
MaeI CTAG 6 cut(s) 126, 290, 776, 1388, 2234, 2561
MaeII ACGT 2 cut(s) 1010, 1993
MbiI CCGCTC 2 cut(s) 46, 317
MfeI CAATTG 2 cut(s) 1188, 2997
MflI RGATCY 1 cut(s) 1948
MhlI GDGCHC 6 cut(s) 339, 528, 1733, 2348, 2569, 2604
MlsI TGGCCA 2 cut(s) 2387, 2995
MluNI TGGCCA 2 cut(s) 2387, 2995
Mly113I GGCGCC 1 cut(s) 688
MlyI GAGTC 4 cut(s) 351, 378, 1225, 3028
MmeI TCCRAC 3 cut(s) 898, 2470, 2984
Mox20I TGGCCA 2 cut(s) 2387, 2995
Mph1103I ATGCAT 2 cut(s) 1750, 1838
MroI TCCGGA 2 cut(s) 1207, 1751
MroXI GAANNNNTTC 2 cut(s) 857, 2834
MscI TGGCCA 2 cut(s) 2387, 2995
MseI TTAA 7 cut(s) 737, 1151, 1761, 1943, 2010, 2396, 2516
MslI CAYNNNNRTG 1 cut(s) 2777
Msp20I TGGCCA 2 cut(s) 2387, 2995
MspA1I CMGCKG 2 cut(s) 2501, 2522
MspR9I CCNGG 5 cut(s) 1112, 1480, 1961, 1962, 2789
MunI CAATTG 2 cut(s) 1188, 2997
Mva1269I GAATGC 3 cut(s) 392, 1608, 2066
MvaI CCWGG 1 cut(s) 2789
MvnI CGCG 4 cut(s) 963, 1157, 1781, 2336
NarI GGCGCC 1 cut(s) 688
NciI CCSGG 4 cut(s) 1112, 1480, 1961, 1962
NcoI CCATGG 2 cut(s) 346, 2310
NlaIV GGNNCC 4 cut(s) 689, 1398, 2634, 2663
NmeAIII GCCGAG 2 cut(s) 486, 973
NmuCI GTSAC 5 cut(s) 907, 1228, 1372, 2251, 2881
NruI TCGCGA 1 cut(s) 2336
NsiI ATGCAT 2 cut(s) 1750, 1838
NspI RCATGY 3 cut(s) 20, 2092, 2122
OliI CACNNNNGTG 1 cut(s) 2777
PaeI GCATGC 2 cut(s) 20, 2122
PagI TCATGA 2 cut(s) 1453, 2604
PaqCI CACCTGC 1 cut(s) 2887
PceI AGGCCT 3 cut(s) 1215, 1625, 1932
PciI ACATGT 1 cut(s) 2088
PctI GAATGC 3 cut(s) 392, 1608, 2066
PdmI GAANNNNTTC 2 cut(s) 857, 2834
PfeI GAWTC 9 cut(s) 516, 803, 853, 1450, 1546, 1679, 2317, 2844, 3019
PflFI GACNNNGTC 1 cut(s) 656
PflMI CCANNNNNTGG 3 cut(s) 1383, 1813, 2245
PinAI ACCGGT 1 cut(s) 2617
PleI GAGTC 4 cut(s) 350, 378, 1225, 3028
PluTI GGCGCC 1 cut(s) 691
PpsI GAGTC 4 cut(s) 350, 378, 1225, 3028
PpuMI RGGWCCY 1 cut(s) 2187
PscI ACATGT 1 cut(s) 2088
Psp124BI GAGCTC 2 cut(s) 2348, 2604
Psp5II RGGWCCY 1 cut(s) 2187
Psp6I CCWGG 1 cut(s) 2787
PspEI GGTNACC 1 cut(s) 1372
PspGI CCWGG 1 cut(s) 2787
PspN4I GGNNCC 4 cut(s) 689, 1398, 2634, 2663
PspPI GGNCC 1 cut(s) 2187
PspPPI RGGWCCY 1 cut(s) 2187
PstI CTGCAG 2 cut(s) 1711, 2898
PstNI CAGNNNCTG 1 cut(s) 2533
PsuI RGATCY 1 cut(s) 1948
PsyI GACNNNGTC 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 2522
RruI TCGCGA 1 cut(s) 2336
RsaI GTAC 2 cut(s) 1333, 1866
RsaNI GTAC 2 cut(s) 1332, 1865
RseI CAYNNNNRTG 1 cut(s) 2777
SacI GAGCTC 2 cut(s) 2348, 2604
SaqAI TTAA 7 cut(s) 737, 1151, 1761, 1943, 2010, 2396, 2516
Sau96I GGNCC 1 cut(s) 2187
SchI GAGTC 4 cut(s) 351, 378, 1225, 3028
ScrFI CCNGG 5 cut(s) 1112, 1480, 1961, 1962, 2789
SduI GDGCHC 6 cut(s) 339, 528, 1733, 2348, 2569, 2604
SfaNI GCATC 4 cut(s) 891, 1757, 1823, 2263
SfcI CTRYAG 2 cut(s) 1707, 2894
SfoI GGCGCC 1 cut(s) 689
SinI GGWCC 1 cut(s) 2187
SmaI CCCGGG 1 cut(s) 1962
SmiMI CAYNNNNRTG 1 cut(s) 2777
SmlI CTYRAG 4 cut(s) 2072, 2673, 2819, 3053
SmoI CTYRAG 4 cut(s) 2072, 2673, 2819, 3053
SphI GCATGC 2 cut(s) 20, 2122
SseBI AGGCCT 3 cut(s) 1215, 1625, 1932
SspDI GGCGCC 1 cut(s) 687
SspMI CTAG 6 cut(s) 126, 290, 776, 1388, 2234, 2561
SstI GAGCTC 2 cut(s) 2348, 2604
StuI AGGCCT 3 cut(s) 1215, 1625, 1932
StyD4I CCNGG 5 cut(s) 1110, 1478, 1959, 1960, 2787
StyI CCWWGG 3 cut(s) 346, 1807, 2310
TaaI ACNGT 7 cut(s) 530, 627, 1324, 1988, 2392, 2455, 2535
TaiI ACGT 2 cut(s) 1013, 1996
TauI GCSGC 6 cut(s) 49, 354, 684, 963, 1820, 1959
TfiI GAWTC 9 cut(s) 516, 803, 853, 1450, 1546, 1679, 2317, 2844, 3019
Tru1I TTAA 7 cut(s) 737, 1151, 1761, 1943, 2010, 2396, 2516
Tru9I TTAA 7 cut(s) 737, 1151, 1761, 1943, 2010, 2396, 2516
TscAI CASTG 6 cut(s) 1087, 1566, 2044, 2112, 2225, 2766
TseFI GTSAC 5 cut(s) 907, 1228, 1372, 2251, 2881
Tsp45I GTSAC 5 cut(s) 907, 1228, 1372, 2251, 2881
TspGWI ACGGA 2 cut(s) 354, 2645
TspMI CCCGGG 1 cut(s) 1960
TspRI CASTG 6 cut(s) 1087, 1566, 2044, 2112, 2225, 2766
Tth111I GACNNNGTC 1 cut(s) 656
Van91I CCANNNNNTGG 3 cut(s) 1383, 1813, 2245
VneI GTGCAC 2 cut(s) 524, 1729
VpaK11BI GGWCC 1 cut(s) 2187
XapI RAATTY 3 cut(s) 1790, 1897, 2542
XbaI TCTAGA 2 cut(s) 125, 775
XceI RCATGY 3 cut(s) 20, 2092, 2122
XmaI CCCGGG 1 cut(s) 1960
XmiI GTMKAC 2 cut(s) 5, 798
XmnI GAANNNNTTC 2 cut(s) 857, 2834
XspI CTAG 6 cut(s) 126, 290, 776, 1388, 2234, 2561
Zsp2I ATGCAT 2 cut(s) 1750, 1838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.