Rorug03G0317400

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
34288117 .. 34288827
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0317400.1

Sequence Viewer

Length: 711 bp
ATGAAATTAATTCATATTTCATACCATGATTTCCTGCCATCCAAACGGGGCCTAGAGATCCAAGCTTCTAAAGCCGCCATTGACAATGCCTTGCGCACCACCCCACAGCCGTCTCACGGCCCTTCTCCTCATCTCCTTCATCTTTGTTCTCAAATGGCTTCTCTTGAGGAAGTTACTGCAAGCTTCAAAGCGTCTCTTGCACTTGCAGGAGATGATGTGATTGATATCACGATGCTGTCACGTGGGAAAACTCAACGAAATTCTCAAGCCTACTTGTTAGGAAGATCCCTCTCACCCAAGCCTGTGGAGATCAATGACCTTCGTCATCATTTTCATAGGATTTGGGTGATGGAAAAAAACTTCAAAATCCAGGAAAGAACAAACTCCATTTTCCTCTTCTCTTTTGATTACCGTGGCGACCTGCTCAAAGTGATTAGAGGAGGGCCTTGGAATTATACTCGAGCTCTAATGGTGTTGATGGAGTATGATGGTGTGACACCAATTGAAAAGATCCCTCTGAACCTACTATACTATTGGGTATGTATCACTCATATCCCTACTGCTTATGAGAAAAAAGAAATTATCATGGATATTGCTACTGTGGTTGTCCATCCCCTTGAACTGGATGAAAAGCTCTTTAACAACAAAGGGGAGATTAGGGTTAGGGTTAGCCATGATATCCTAAAACTATTTTTTTTGGTAAAAAAGTGA

Protein Analysis

236

Amino Acids

27.15

Weight (kDa)

9.11

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 89 - 162 1.9e-10 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 429
AciI CCGC 1 cut(s) 75
AclWI GGATC 3 cut(s) 52, 279, 505
AcsI RAATTY 1 cut(s) 259
AcvI CACGTG 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 116, 622
AgsI TTSAA 4 cut(s) 187, 364, 506, 620
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 4 cut(s) 65, 183, 464, 634
AluI AGCT 4 cut(s) 65, 183, 464, 634
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 2 cut(s) 117, 198
AlwI GGATC 3 cut(s) 52, 279, 505
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 3 cut(s) 49, 118, 443
ApoI RAATTY 1 cut(s) 259
AseI ATTAAT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 49, 119, 443
AsuHPI GGTGA 2 cut(s) 285, 358
AvaI CYCGRG 1 cut(s) 459
BanII GRGCYC 1 cut(s) 466
BbrPI CACGTG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 466
BccI CCATC 5 cut(s) 46, 343, 472, 482, 618
BceAI ACGGC 2 cut(s) 94, 133
BciT130I CCWGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 117, 198
BfaI CTAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 429
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 3 cut(s) 49, 119, 443
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 222
BoxI GACNNNNGTC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 185, 249
BsaAI YACGTR 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 412, 446
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 622
Bse1I ACTGG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 224
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 412, 446
BseGI GGATG 3 cut(s) 38, 610, 631
BseJI GATNNNNATC 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 116, 622
BseNI ACTGG 1 cut(s) 627
BseRI GAGGAG 2 cut(s) 117, 453
BshFI GGCC 3 cut(s) 51, 120, 445
BsiHKAI GWGCWC 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 459
BslI CCNNNNNNNGG 2 cut(s) 116, 622
BsmAI GTCTC 2 cut(s) 117, 198
BsmBI CGTCTC 2 cut(s) 117, 198
BsnI GGCC 3 cut(s) 51, 120, 445
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 4 cut(s) 57, 284, 309, 510
BspACI CCGC 1 cut(s) 75
BspANI GGCC 3 cut(s) 51, 120, 445
BspLI GGNNCC 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 3 cut(s) 52, 279, 505
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 412, 446
BssMI GATC 4 cut(s) 57, 284, 309, 510
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 413, 601
Bst6I CTCTTC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 3 cut(s) 38, 610, 631
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 4 cut(s) 60, 287, 312, 513
BstMAI GTCTC 2 cut(s) 117, 198
BstMBI GATC 4 cut(s) 57, 284, 309, 510
BstMWI GCNNNNNNNGC 2 cut(s) 71, 197
BstNI CCWGG 1 cut(s) 371
BstPAI GACNNNNGTC 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 369
BstX2I RGATCY 3 cut(s) 57, 284, 510
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 3 cut(s) 57, 284, 510
BsuRI GGCC 3 cut(s) 51, 120, 445
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 3 cut(s) 38, 610, 631
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 49, 119, 443
CseI GACGC 1 cut(s) 180
CviAII CATG 3 cut(s) 26, 586, 674
DpnI GATC 4 cut(s) 59, 286, 311, 512
DpnII GATC 4 cut(s) 57, 284, 309, 510
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Ecl136II GAGCTC 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 466
Eco32I GATATC 2 cut(s) 226, 679
Eco53kI GAGCTC 1 cut(s) 464
Eco72I CACGTG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 459
EcoICRI GAGCTC 1 cut(s) 464
EcoO109I RGGNCCY 2 cut(s) 49, 443
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 2 cut(s) 226, 679
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 446
Esp3I CGTCTC 2 cut(s) 117, 198
FaeI CATG 3 cut(s) 29, 589, 677
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 3 cut(s) 25, 585, 673
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 3 cut(s) 25, 597, 638
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 53
FspI TGCGCA 1 cut(s) 95
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 3 cut(s) 51, 120, 445
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 96
Hin1II CATG 3 cut(s) 29, 589, 677
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 63, 181
HphI GGTGA 2 cut(s) 285, 358
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 2 cut(s) 164, 229
HpyAV CCTTC 3 cut(s) 132, 146, 329
HpyCH4III ACNGT 2 cut(s) 413, 601
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 179, 200, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 197
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 3 cut(s) 29, 589, 677
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 57, 284, 309, 510
LpnPI CCDG 7 cut(s) 47, 192, 315, 356, 383, 434, 608
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 172, 237, 493
MalI GATC 4 cut(s) 59, 286, 311, 512
MboI GATC 4 cut(s) 57, 284, 309, 510
MboII GAAGA 2 cut(s) 294, 388
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 3 cut(s) 57, 284, 510
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 6 cut(s) 5, 9, 259, 451, 501, 579
MnlI CCTC 7 cut(s) 138, 160, 299, 404, 431, 434, 525
MseI TTAA 2 cut(s) 8, 639
MspR9I CCNGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 71, 197
NdeII GATC 4 cut(s) 57, 284, 309, 510
NlaIII CATG 3 cut(s) 29, 589, 677
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 237, 493
NsbI TGCGCA 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 459
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 1 cut(s) 76
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 242
PshAI GACNNNNGTC 1 cut(s) 321
PshBI ATTAAT 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 369
PspCI CACGTG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 3 cut(s) 49, 119, 443
PspXI VCTCGAGB 1 cut(s) 459
PsrI GAACNNNNNNTAC 2 cut(s) 512, 544
PsuI RGATCY 3 cut(s) 57, 284, 510
SacI GAGCTC 1 cut(s) 466
SaqAI TTAA 2 cut(s) 8, 639
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 57, 284, 309, 510
Sau96I GGNCC 3 cut(s) 49, 119, 443
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 466
SetI ASST 8 cut(s) 67, 185, 244, 321, 423, 466, 525, 636
SfaNI GCATC 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 459
SlaI CTCGAG 1 cut(s) 459
SmlI CTYRAG 3 cut(s) 164, 264, 459
SmoI CTYRAG 3 cut(s) 164, 264, 459
Sse9I AATT 6 cut(s) 5, 9, 259, 451, 501, 579
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 53
SstI GAGCTC 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 413, 601
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 460
TasI AATT 6 cut(s) 5, 9, 259, 451, 501, 579
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 8, 639
Tru9I TTAA 2 cut(s) 8, 639
TseFI GTSAC 2 cut(s) 237, 493
Tsp45I GTSAC 2 cut(s) 237, 493
TspDTI ATGAA 5 cut(s) 9, 17, 128, 323, 642
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 1 cut(s) 259
XhoI CTCGAG 1 cut(s) 459
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.