Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001949.1

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

110935 .. 113091

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001949.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

atggagaaaaatctcaaccagcttctgaagctgggaggggttgaagaagtggcatcagctctcaaaactgacgcagtgcacggaattagtggtgatgatgctgacgacatcgcctccaggcatgaagcatttggttccaacacatacaagaaaccgccaacgcaaggattcctccattttgtgtgggaagccttcaaagacctcacgatcctaatcctcttgggatgtgctgcgctttctcttggtttcagcatcaaagagcatggattgaaagaaggttggattgatggtggaagcatttgtctcgcggtcattctggtcatttctgtttcagccataagcaactacagacagagcagacagtttgacaagctgtcgaaagtcagcaacaatctccagattgaggctgtgagaaatggaaggcgccaactgatttcaatattcgaaattgtggtgggtgacgtcatctgcttaaaaattggagatcaagttccagcagatggattgcttttagatggccactctttatcagtagatgaatcaagcatgacaggggagagcaaccatgttgaggtaagtgtcactgagaatcctttcttgttctctgggactaaaatagccgatggttatggtcgcatgcttgtcacgtcggtcgggatgaacacaaactggggtgaaatgatgagccaaattagccaagacaccagtgaaaagacacctctacaagcacgtttagacaagctaacttcgtccatcggtaaagttggtttggcagttgctttctttgttcttgtagtcatgttggtccggtacttcacagggaatacagaggatgagaatggaaacaaagagtacaatggcagcaagacaaaatctaatgacataataaatgccgttattgggattgtagcagctgcagttagaattgttgaggtggcaattccagaaggtctaccattagctgtgactctcactcttgcttatcccatgaagagaatgatgggtgataacgcaatggtgcggaagctctctgcttgtgagaccatgggatctgctacaacaatttgtactgacaaaacaggtactctgaccacgaaccagatgaaggtgacaaagttttggttggggaaagaatctgtggaagaagaagcttattcatctatctctccttatgttctcgacttgatccaagaaggggttgctcttaatacaactggtggtgtgtacaggcctagcttggattctgaaattgagatctcatgcagtccaactgaaaaggctattctttcatgggcggtacatgggtcgaacatggatatggagaaagtcgtgaagagtagtagcattctccacgttgaagcctttaattcgaagaagaaacagagtggagttctggtgaagagaaaggctgacagctcagtccatgtacactggaaaggagcagcagagatgatactagcaatgtgcacaagttactacaatgtctctggagttgtcaaggatatggatacaaatgaaaaaaggaactttgagcaaattattcaaggtatggcagctagcagcctcagatgcatagcattcgcacataaacaagttcccactgaagagcgactaaatgcagaccagaaagttgtgctaaaggaagatggattgaccctattgggagttgtcggtcttacagatccatgtcgtcccgatgtgaagaaagcagttgaagaatgccaatatgcaggggtgaacgtcaaaatgattaccggcgacaatgttttcactgcaaaagccatagccactaaatgtgggatactcaggcctggtcaagacatgcttggagcagtgatagaaggtatggaatttcgcaactacacgccagaacagagaatggagaaagttgagaaaatttgtgtgatggcaaggtcttctccttttgataagcttctaatggtgcaatgcttgaaacagaaaggtcatgtagttgcagtgacgggtgatggcactaatgatgccccggcattgaaagaagctgatataggactttccatggagattcaaggcacagaagttgccaaggaaagctcagatattgtgatcatggatgataactttgcttcagttgctacagttttgatgtggggaagatgtgtctacaataatatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

718

Amino Acids

77.96

Weight (kDa)

5.52

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1418
AatII	GACGTC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	423
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	2 cut(s)	952, 2142
AccII	CGCG	1 cut(s)	308
AciI	CCGC	4 cut(s)	155, 308, 1021, 1295
AclWI	GGATC	4 cut(s)	202, 1057, 1180, 1676
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	2 cut(s)	1850, 1896
AcuI	CTGAAG	3 cut(s)	47, 1623, 2091
AcyI	GRCGYC	2 cut(s)	424, 462
AfaI	GTAC	7 cut(s)	812, 854, 1069, 1084, 1226, 1299, 1428
AfiI	CCNNNNNNNGG	7 cut(s)	164, 403, 500, 571, 900, 1105, 1195
AhdI	GACNNNNNGTC	1 cut(s)	373
AjiI	CACGTC	1 cut(s)	648
AjnI	CCWGG	2 cut(s)	116, 1810
AloI	GAACNNNNNNTCC	2 cut(s)	474, 506
Alw21I	GWGCWC	2 cut(s)	81, 1469
Alw26I	GTCTC	3 cut(s)	308, 1034, 1489
Alw44I	GTGCAC	2 cut(s)	77, 1465
AlwI	GGATC	4 cut(s)	202, 1057, 1180, 1676
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	517, 1229, 1808
ApaLI	GTGCAC	2 cut(s)	77, 1465
ApeKI	GCWGC	7 cut(s)	230, 861, 911, 914, 1442, 1553, 1560
ApoI	RAATTY	2 cut(s)	1850, 1896
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	2 cut(s)	235, 426
AspS9I	GGNCC	1 cut(s)	805
AsuC2I	CCSGG	1 cut(s)	2006
AsuHPI	GGTGA	8 cut(s)	104, 470, 686, 1016, 1120, 1408, 1747, 1997
AsuII	TTCGAA	2 cut(s)	444, 1370
AsuNHI	GCTAGC	1 cut(s)	1556
AvaII	GGWCC	1 cut(s)	805
BaeGI	GKGCMC	2 cut(s)	81, 1469
BaeI	ACNNNNGTAYC	2 cut(s)	1289, 1322
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	1908
Bbv12I	GWGCWC	2 cut(s)	81, 1469
BbvI	GCAGC	7 cut(s)	217, 873, 901, 923, 1454, 1565, 1572
BccI	CCATC	9 cut(s)	281, 494, 509, 617, 761, 994, 1640, 1900, 1982
BceAI	ACGGC	1 cut(s)	878
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 1561, 1595
BciT130I	CCWGG	2 cut(s)	118, 1812
BciVI	GTATCC	2 cut(s)	1501, 1794
BclI	TGATCA	1 cut(s)	2085
BcnI	CCSGG	1 cut(s)	2006
BcoDI	GTCTC	3 cut(s)	308, 1034, 1489
BfaI	CTAG	3 cut(s)	1233, 1457, 1557
BfmI	CTRYAG	3 cut(s)	346, 915, 2115
BfoI	RGCGCY	1 cut(s)	427
BfuI	GTATCC	2 cut(s)	1501, 1794
BglII	AGATCT	1 cut(s)	1254
BisI	GCNGC	7 cut(s)	231, 862, 912, 915, 1443, 1554, 1561
BlsI	GCNGC	7 cut(s)	232, 863, 913, 916, 1444, 1555, 1562
Bme1390I	CCNGG	3 cut(s)	118, 1812, 2006
Bme18I	GGWCC	1 cut(s)	805
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	805
BmiI	GGNNCC	2 cut(s)	136, 425
BmrFI	CCNGG	3 cut(s)	118, 1812, 2006
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	5 cut(s)	62, 88, 261, 1559, 1990
BmtI	GCTAGC	1 cut(s)	1560
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	1908
BpmI	CTGGAG	3 cut(s)	100, 380, 1509
Bpu14I	TTCGAA	2 cut(s)	444, 1370
BpuMI	CCSGG	1 cut(s)	2006
BsaBI	GATNNNNATC	1 cut(s)	212
BsaHI	GRCGYC	2 cut(s)	424, 462
BsaI	GGTCTC	1 cut(s)	1034
BsaJI	CCNNGG	4 cut(s)	1044, 2004, 2037, 2064
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 474, 504, 1380, 1410
Bsc4I	CCNNNNNNNGG	7 cut(s)	164, 403, 500, 571, 900, 1105, 1195
Bse118I	RCCGGY	1 cut(s)	1754
Bse1I	ACTGG	4 cut(s)	674, 705, 1219, 1436
Bse3DI	GCAATG	3 cut(s)	1020, 1467, 1952
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	118, 1812
BseDI	CCNNGG	4 cut(s)	1044, 2004, 2037, 2064
BseGI	GGATG	4 cut(s)	230, 663, 838, 2098
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	7 cut(s)	164, 403, 500, 571, 900, 1105, 1195
BseMI	GCAATG	3 cut(s)	1020, 1467, 1952
BseMII	CTCAG	5 cut(s)	576, 1431, 1579, 1819, 2088
BseNI	ACTGG	4 cut(s)	674, 705, 1219, 1436
BseSI	GKGCMC	2 cut(s)	81, 1469
BseXI	GCAGC	7 cut(s)	217, 873, 901, 923, 1454, 1565, 1572
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	654
BshFI	GGCC	3 cut(s)	519, 1231, 1810
BshNI	GGYRCC	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	654
BsiHKAI	GWGCWC	2 cut(s)	81, 1469
BsiSI	CCGG	3 cut(s)	808, 1755, 2006
BslFI	GGGAC	2 cut(s)	622, 1677
BslI	CCNNNNNNNGG	7 cut(s)	164, 403, 500, 571, 900, 1105, 1195
BsmAI	GTCTC	3 cut(s)	308, 1034, 1489
BsmFI	GGGAC	2 cut(s)	622, 1677
BsmI	GAATGC	3 cut(s)	1344, 1577, 1724
BsnI	GGCC	3 cut(s)	519, 1231, 1810
Bso31I	GGTCTC	1 cut(s)	1034
Bsp119I	TTCGAA	2 cut(s)	444, 1370
Bsp1286I	GDGCHC	2 cut(s)	81, 1469
Bsp1407I	TGTACA	2 cut(s)	1224, 1426
Bsp143I	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
Bsp19I	CCATGG	2 cut(s)	1044, 2037
BspACI	CCGC	4 cut(s)	155, 308, 1021, 1295
BspANI	GGCC	3 cut(s)	519, 1231, 1810
BspCNI	CTCAG	5 cut(s)	577, 1430, 1578, 1818, 2087
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	136, 425
BspMAI	CTGCAG	1 cut(s)	919
BspOI	GCTAGC	1 cut(s)	1560
BspPI	GGATC	4 cut(s)	202, 1057, 1180, 1676
BspQI	GCTCTTC	1 cut(s)	1599
BspT104I	TTCGAA	2 cut(s)	444, 1370
BspT107I	GGYRCC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	1034
BsrDI	GCAATG	3 cut(s)	1020, 1467, 1952
BsrFI	RCCGGY	1 cut(s)	1754
BsrGI	TGTACA	2 cut(s)	1224, 1426
BsrI	ACTGG	4 cut(s)	674, 705, 1219, 1436
BssAI	RCCGGY	1 cut(s)	1754
BssECI	CCNNGG	4 cut(s)	1044, 2004, 2037, 2064
BssMI	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
BssNI	GRCGYC	2 cut(s)	424, 462
BssT1I	CCWWGG	3 cut(s)	1044, 2037, 2064
Bst2UI	CCWGG	2 cut(s)	118, 1812
Bst4CI	ACNGT	2 cut(s)	363, 2119
Bst6I	CTCTTC	4 cut(s)	986, 1328, 1394, 1599
BstACI	GRCGYC	2 cut(s)	424, 462
BstAUI	TGTACA	2 cut(s)	1224, 1426
BstBI	TTCGAA	2 cut(s)	444, 1370
BstC8I	GCNNGC	2 cut(s)	638, 1558
BstDEI	CTNAG	5 cut(s)	585, 1417, 1565, 1805, 2074
BstDSI	CCRYGG	2 cut(s)	1044, 2037
BstF5I	GGATG	4 cut(s)	230, 663, 838, 2098
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	2 cut(s)	235, 426
BstKTI	GATC	7 cut(s)	210, 487, 1052, 1188, 1257, 1684, 2088
BstMAI	GTCTC	3 cut(s)	308, 1034, 1489
BstMBI	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
BstMCI	CGRYCG	1 cut(s)	654
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 693, 1569, 2111
BstNI	CCWGG	2 cut(s)	118, 1812
BstNSI	RCATGY	2 cut(s)	640, 1825
BstSCI	CCNGG	3 cut(s)	116, 1810, 2004
BstSFI	CTRYAG	3 cut(s)	346, 915, 2115
BstSLI	GKGCMC	2 cut(s)	81, 1469
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	7 cut(s)	217, 873, 901, 923, 1454, 1565, 1572
BstV2I	GAAGAC	1 cut(s)	1908
BstX2I	RGATCY	3 cut(s)	1049, 1254, 1681
BstYI	RGATCY	3 cut(s)	1049, 1254, 1681
BsuI	GTATCC	2 cut(s)	1501, 1794
BsuRI	GGCC	3 cut(s)	519, 1231, 1810
BtgI	CCRYGG	2 cut(s)	1044, 2037
BtgZI	GCGATG	1 cut(s)	94
BtrI	CACGTC	1 cut(s)	648
BtsCI	GGATG	4 cut(s)	230, 663, 838, 2098
BtsI	GCAGTG	4 cut(s)	81, 1770, 1839, 1983
BtsIMutI	CAGTG	8 cut(s)	81, 582, 712, 1429, 1599, 1770, 1839, 1983
Cac8I	GCNNGC	2 cut(s)	638, 1558
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	2 cut(s)	235, 426
Cfr10I	RCCGGY	1 cut(s)	1754
Cfr13I	GGNCC	1 cut(s)	805
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	7 cut(s)	811, 853, 1068, 1083, 1225, 1298, 1427
CviQI	GTAC	7 cut(s)	811, 853, 1068, 1083, 1225, 1298, 1427
DdeI	CTNAG	5 cut(s)	585, 1417, 1565, 1805, 2074
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	7 cut(s)	209, 486, 1051, 1187, 1256, 1683, 2087
DpnII	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
DrdI	GACNNNNNNGTC	1 cut(s)	1418
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	1418
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	4 cut(s)	986, 1328, 1394, 1599
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	4 cut(s)	986, 1328, 1394, 1599
Eco130I	CCWWGG	3 cut(s)	1044, 2037, 2064
Eco147I	AGGCCT	2 cut(s)	1231, 1810
Eco31I	GGTCTC	1 cut(s)	1034
Eco47I	GGWCC	1 cut(s)	805
Eco57I	CTGAAG	3 cut(s)	47, 1623, 2091
EcoRII	CCWGG	2 cut(s)	116, 1810
EcoT14I	CCWWGG	3 cut(s)	1044, 2037, 2064
EcoT22I	ATGCAT	1 cut(s)	1574
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
ErhI	CCWWGG	3 cut(s)	1044, 2037, 2064
FalI	AAGNNNNNCTT	2 cut(s)	1809, 1841
FaqI	GGGAC	2 cut(s)	622, 1677
FbaI	TGATCA	1 cut(s)	2085
FblI	GTMKAC	2 cut(s)	952, 2142
Fnu4HI	GCNGC	7 cut(s)	231, 862, 912, 915, 1443, 1554, 1561
FokI	GGATG	4 cut(s)	237, 670, 845, 2105
Fsp4HI	GCNGC	7 cut(s)	231, 862, 912, 915, 1443, 1554, 1561
FspBI	CTAG	3 cut(s)	1233, 1457, 1557
GlaI	GCGC	2 cut(s)	234, 425
GluI	GCNGC	7 cut(s)	231, 862, 912, 915, 1443, 1554, 1561
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	3 cut(s)	100, 380, 1509
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	3 cut(s)	519, 1231, 1810
HapII	CCGG	3 cut(s)	808, 1755, 2006
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	2 cut(s)	235, 426
Hin1I	GRCGYC	2 cut(s)	424, 462
Hin6I	GCGC	2 cut(s)	233, 424
HinP1I	GCGC	2 cut(s)	233, 424
HindIII	AAGCTT	2 cut(s)	1149, 1931
HinfI	GANTC	7 cut(s)	168, 539, 589, 967, 1133, 1241, 2044
HpaII	CCGG	3 cut(s)	808, 1755, 2006
HphI	GGTGA	8 cut(s)	104, 470, 686, 1016, 1120, 1408, 1747, 1997
Hpy166II	GTNNAC	7 cut(s)	79, 953, 1225, 1429, 1467, 1738, 2143
Hpy188I	TCNGA	5 cut(s)	27, 1089, 1246, 1568, 2077
Hpy188III	TCNNGA	9 cut(s)	205, 397, 655, 944, 1178, 1330, 1488, 1694, 1817
Hpy8I	GTNNAC	7 cut(s)	79, 953, 1225, 1429, 1467, 1738, 2143
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	7 cut(s)	202, 269, 414, 941, 1099, 1187, 1835
HpyCH4III	ACNGT	2 cut(s)	363, 2119
HpyCH4IV	ACGT	5 cut(s)	462, 647, 730, 1353, 1740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 693, 1569, 2111
HpyF3I	CTNAG	5 cut(s)	585, 1417, 1565, 1805, 2074
HpySE526I	ACGT	5 cut(s)	462, 647, 730, 1353, 1740
Hsp92I	GRCGYC	2 cut(s)	424, 462
HspAI	GCGC	2 cut(s)	233, 424
KasI	GGCGCC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	2085
Kzo9I	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
LguI	GCTCTTC	1 cut(s)	1599
LmnI	GCTCC	2 cut(s)	1439, 1829
Lsp1109I	GCAGC	7 cut(s)	217, 873, 901, 923, 1454, 1565, 1572
LweI	GCATC	5 cut(s)	62, 88, 261, 1559, 1990
MaeI	CTAG	3 cut(s)	1233, 1457, 1557
MaeII	ACGT	5 cut(s)	462, 647, 730, 1353, 1740
MaeIII	GTNAC	7 cut(s)	458, 580, 643, 964, 1108, 1472, 1978
MalI	GATC	7 cut(s)	209, 486, 1051, 1187, 1256, 1683, 2087
MboI	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
MflI	RGATCY	3 cut(s)	1049, 1254, 1681
MhlI	GDGCHC	2 cut(s)	81, 1469
MlsI	TGGCCA	1 cut(s)	519
MluNI	TGGCCA	1 cut(s)	519
Mly113I	GGCGCC	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	961
MmeI	TCCRAC	3 cut(s)	162, 260, 1292
Mox20I	TGGCCA	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	1574
MroXI	GAANNNNTTC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	3 cut(s)	473, 1206, 1365
MslI	CAYNNNNRTG	1 cut(s)	1316
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	3 cut(s)	808, 1755, 2006
MspR9I	CCNGG	3 cut(s)	118, 1812, 2006
Mva1269I	GAATGC	3 cut(s)	1344, 1577, 1724
MvaI	CCWGG	2 cut(s)	118, 1812
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	28, 693, 1569, 2111
NarI	GGCGCC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	2006
NcoI	CCATGG	2 cut(s)	1044, 2037
NdeII	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
NheI	GCTAGC	1 cut(s)	1556
NlaIV	GGNNCC	2 cut(s)	136, 425
NmuCI	GTSAC	6 cut(s)	458, 580, 643, 964, 1108, 1978
NsiI	ATGCAT	1 cut(s)	1574
NspI	RCATGY	2 cut(s)	640, 1825
NspV	TTCGAA	2 cut(s)	444, 1370
PaeI	GCATGC	1 cut(s)	640
PceI	AGGCCT	2 cut(s)	1231, 1810
PciSI	GCTCTTC	1 cut(s)	1599
PctI	GAATGC	3 cut(s)	1344, 1577, 1724
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	6 cut(s)	168, 539, 589, 1133, 1241, 2044
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	7 cut(s)	232, 863, 913, 916, 1444, 1555, 1562
PleI	GAGTC	1 cut(s)	961
PluTI	GGCGCC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	961
Psp6I	CCWGG	2 cut(s)	116, 1810
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	116, 1810
PspN4I	GGNNCC	2 cut(s)	136, 425
PspPI	GGNCC	1 cut(s)	805
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	3 cut(s)	1049, 1254, 1681
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	7 cut(s)	812, 854, 1069, 1084, 1226, 1299, 1428
RsaNI	GTAC	7 cut(s)	811, 853, 1068, 1083, 1225, 1298, 1427
RseI	CAYNNNNRTG	1 cut(s)	1316
SapI	GCTCTTC	1 cut(s)	1599
SaqAI	TTAA	3 cut(s)	473, 1206, 1365
SatI	GCNGC	7 cut(s)	231, 862, 912, 915, 1443, 1554, 1561
Sau3AI	GATC	7 cut(s)	207, 484, 1049, 1185, 1254, 1681, 2085
Sau96I	GGNCC	1 cut(s)	805
SchI	GAGTC	1 cut(s)	961
ScrFI	CCNGG	3 cut(s)	118, 1812, 2006
SduI	GDGCHC	2 cut(s)	81, 1469
SfaNI	GCATC	5 cut(s)	62, 88, 261, 1559, 1990
SfcI	CTRYAG	3 cut(s)	346, 915, 2115
SfoI	GGCGCC	1 cut(s)	425
SfuI	TTCGAA	2 cut(s)	444, 1370
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	1316
SphI	GCATGC	1 cut(s)	640
SseBI	AGGCCT	2 cut(s)	1231, 1810
SsiI	CCGC	4 cut(s)	155, 308, 1021, 1295
SspDI	GGCGCC	1 cut(s)	423
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	3 cut(s)	1233, 1457, 1557
StuI	AGGCCT	2 cut(s)	1231, 1810
StyD4I	CCNGG	3 cut(s)	116, 1810, 2004
StyI	CCWWGG	3 cut(s)	1044, 2037, 2064
TaaI	ACNGT	2 cut(s)	363, 2119
TaiI	ACGT	5 cut(s)	465, 650, 733, 1356, 1743
TaqI	TCGA	5 cut(s)	377, 444, 1179, 1307, 1370
TaqII	GACCGA	2 cut(s)	640, 1661
TatI	WGTACW	4 cut(s)	852, 1067, 1224, 1426
TfiI	GAWTC	6 cut(s)	168, 539, 589, 1133, 1241, 2044
Tru1I	TTAA	3 cut(s)	473, 1206, 1365
Tru9I	TTAA	3 cut(s)	473, 1206, 1365
TscAI	CASTG	8 cut(s)	81, 589, 712, 1436, 1606, 1777, 1839, 1983
TseFI	GTSAC	6 cut(s)	458, 580, 643, 964, 1108, 1978
TseI	GCWGC	7 cut(s)	230, 861, 911, 914, 1442, 1553, 1560
Tsp45I	GTSAC	6 cut(s)	458, 580, 643, 964, 1108, 1978
TspDTI	ATGAA	8 cut(s)	138, 552, 674, 1004, 1118, 1146, 1278, 1530
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	8 cut(s)	81, 589, 712, 1436, 1606, 1777, 1839, 1983
Van91I	CCANNNNNTGG	1 cut(s)	500
VneI	GTGCAC	2 cut(s)	77, 1465
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	2 cut(s)	1850, 1896
XceI	RCATGY	2 cut(s)	640, 1825
XmiI	GTMKAC	2 cut(s)	952, 2142
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	3 cut(s)	1233, 1457, 1557
ZraI	GACGTC	1 cut(s)	463
Zsp2I	ATGCAT	1 cut(s)	1574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.