Rh4CG025700

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
4967757 .. 4968704
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG025700.1

Sequence Viewer

Length: 948 bp
ATGATTACTGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTCGGAGCAGTGATAGAAGGTGTCGAATTTCGCAACTACACGCCAGAAGAGAGAATGGAGAAAGTTGAGAAAATTGCTGTGATGGCAAGGTCTTCTCCGTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACCGGTGATGGTACCAATGATGCACCGGCACTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGATGTGGGGAAGATGTGTGTACAATAACATCCAGAAGTTCATCCAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAACCGACAAGAGAACTTATGGAGAAGCCACCAGTGGGAAGGACGGCACCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTATCAAATAACAGTCCTATTGATCTTACAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCGAGAAAGCTAGAGAAGAAGAATGTGTTCAAGGGAATACATACCAATAAGTTGTTCATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAGGTTCTTAAGAAATTTGCAGATACGGAGAGGTTGAATTGGGGACAATATGCATAG

Protein Analysis

315

Amino Acids

34.81

Weight (kDa)

8.26

Isoelectric Point (pI)

22.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 1 - 93 3e-06 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 164 - 314 8.6e-43 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 473
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 2 cut(s) 245, 613
AciI CCGC 2 cut(s) 27, 470
AclWI GGATC 1 cut(s) 860
AcsI RAATTY 2 cut(s) 104, 905
AcuI CTGAAG 2 cut(s) 345, 860
AfaI GTAC 2 cut(s) 247, 398
AfiI CCNNNNNNNGG 1 cut(s) 602
AflII CTTAAG 1 cut(s) 899
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 7 cut(s) 208, 302, 751, 778, 787, 820, 928
AjnI CCWGG 2 cut(s) 64, 768
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AleI CACNNNNGTG 1 cut(s) 758
AluBI AGCT 6 cut(s) 187, 275, 327, 449, 548, 799
AluI AGCT 6 cut(s) 187, 275, 327, 449, 548, 799
Alw21I GWGCWC 2 cut(s) 329, 550
Alw26I GTCTC 1 cut(s) 6
AlwI GGATC 1 cut(s) 860
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 104, 905
AsiGI ACCGGT 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 815
Asp718I GGTACC 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 16, 251, 424
BanI GGYRCC 2 cut(s) 245, 613
BanII GRGCYC 2 cut(s) 329, 550
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 329, 550
BbvI GCAGC 1 cut(s) 458
BccI CCATC 3 cut(s) 154, 236, 880
BceAI ACGGC 1 cut(s) 627
BciT130I CCWGG 2 cut(s) 66, 770
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 3 cut(s) 339, 456, 528
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 1 cut(s) 800
BfrI CTTAAG 1 cut(s) 899
BfuAI ACCTGC 1 cut(s) 473
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 2 cut(s) 447, 471
BlsI GCNGC 2 cut(s) 448, 472
Bme1390I CCNGG 2 cut(s) 66, 770
BmiI GGNNCC 3 cut(s) 247, 615, 644
BmrFI CCNGG 2 cut(s) 66, 770
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 639
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse118I RCCGGY 2 cut(s) 236, 259
Bse1I ACTGG 2 cut(s) 13, 599
Bse3DI GCAATG 2 cut(s) 206, 855
BseBI CCWGG 2 cut(s) 66, 770
BseGI GGATG 3 cut(s) 352, 405, 417
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 2 cut(s) 206, 855
BseMII CTCAG 2 cut(s) 73, 342
BseNI ACTGG 2 cut(s) 13, 599
BseXI GCAGC 1 cut(s) 458
BshFI GGCC 1 cut(s) 64
BshNI GGYRCC 2 cut(s) 245, 613
BshTI ACCGGT 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 329, 550
BsiSI CCGG 2 cut(s) 237, 260
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 6
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 329, 550
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 6 cut(s) 339, 456, 528, 684, 744, 852
BspACI CCGC 2 cut(s) 27, 470
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 72, 341
BspLI GGNNCC 3 cut(s) 247, 615, 644
BspMI ACCTGC 1 cut(s) 473
BspPI GGATC 1 cut(s) 860
BspT107I GGYRCC 2 cut(s) 245, 613
BspTI CTTAAG 1 cut(s) 899
BsrDI GCAATG 2 cut(s) 206, 855
BsrFI RCCGGY 2 cut(s) 236, 259
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 13, 599
BssAI RCCGGY 2 cut(s) 236, 259
BssMI GATC 6 cut(s) 339, 456, 528, 684, 744, 852
Bst2UI CCWGG 2 cut(s) 66, 770
Bst4CI ACNGT 4 cut(s) 373, 436, 663, 676
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 59, 328
BstF5I GGATG 3 cut(s) 352, 405, 417
BstKTI GATC 6 cut(s) 342, 459, 531, 687, 747, 855
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 6 cut(s) 339, 456, 528, 684, 744, 852
BstMWI GCNNNNNNNGC 3 cut(s) 161, 365, 479
BstNI CCWGG 2 cut(s) 66, 770
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 64, 768
BstV1I GCAGC 1 cut(s) 458
BstV2I GAAGAC 1 cut(s) 162
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 3 cut(s) 352, 405, 417
BtsI GCAGTG 3 cut(s) 93, 237, 867
BtsIMutI CAGTG 8 cut(s) 42, 93, 237, 263, 606, 659, 727, 867
BveI ACCTGC 1 cut(s) 473
Cfr10I RCCGGY 2 cut(s) 236, 259
Csp6I GTAC 2 cut(s) 246, 397
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 6 cut(s) 76, 221, 343, 532, 634, 847
CviQI GTAC 2 cut(s) 246, 397
DdeI CTNAG 2 cut(s) 59, 328
DpnI GATC 6 cut(s) 341, 458, 530, 686, 746, 854
DpnII GATC 6 cut(s) 339, 456, 528, 684, 744, 852
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 2 cut(s) 327, 548
Eco147I AGGCCT 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 329, 550
Eco53kI GAGCTC 2 cut(s) 327, 548
Eco57I CTGAAG 2 cut(s) 345, 860
EcoICRI GAGCTC 2 cut(s) 327, 548
EcoRII CCWGG 2 cut(s) 64, 768
EcoT22I ATGCAT 1 cut(s) 946
EcoT38I GRGCYC 2 cut(s) 329, 550
FaeI CATG 6 cut(s) 79, 224, 346, 535, 637, 850
FaqI GGGAC 1 cut(s) 476
FatI CATG 6 cut(s) 75, 220, 342, 531, 633, 846
FbaI TGATCA 3 cut(s) 339, 456, 528
Fnu4HI GCNGC 2 cut(s) 447, 471
FokI GGATG 3 cut(s) 359, 392, 404
FriOI GRGCYC 2 cut(s) 329, 550
Fsp4HI GCNGC 2 cut(s) 447, 471
FspBI CTAG 1 cut(s) 800
GluI GCNGC 2 cut(s) 447, 471
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 237, 260
Hin1II CATG 6 cut(s) 79, 224, 346, 535, 637, 850
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 298
HpaII CCGG 2 cut(s) 237, 260
HphI GGTGA 3 cut(s) 16, 251, 424
Hpy166II GTNNAC 2 cut(s) 397, 523
Hpy188I TCNGA 2 cut(s) 83, 331
Hpy188III TCNNGA 3 cut(s) 71, 409, 883
Hpy8I GTNNAC 2 cut(s) 397, 523
HpyAV CCTTC 2 cut(s) 89, 600
HpyCH4III ACNGT 4 cut(s) 373, 436, 663, 676
HpyCH4V TGCA 7 cut(s) 199, 230, 257, 446, 860, 911, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 365, 479
HpyF3I CTNAG 2 cut(s) 59, 328
Hsp92II CATG 6 cut(s) 79, 224, 346, 535, 637, 850
KpnI GGTACC 1 cut(s) 249
Ksp22I TGATCA 3 cut(s) 339, 456, 528
Kzo9I GATC 6 cut(s) 339, 456, 528, 684, 744, 852
LmnI GCTCC 2 cut(s) 83, 545
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 800
MaeIII GTNAC 2 cut(s) 232, 862
MalI GATC 6 cut(s) 341, 458, 530, 686, 746, 854
MboI GATC 6 cut(s) 339, 456, 528, 684, 744, 852
MboII GAAGA 7 cut(s) 137, 162, 399, 739, 817, 820, 866
MfeI CAATTG 1 cut(s) 867
MhlI GDGCHC 2 cut(s) 329, 550
MluCI AATT 7 cut(s) 104, 150, 422, 692, 867, 905, 928
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 6 cut(s) 627, 633, 656, 663, 886, 915
Mph1103I ATGCAT 1 cut(s) 946
MroXI GAANNNNTTC 1 cut(s) 815
MseI TTAA 2 cut(s) 497, 900
MslI CAYNNNNRTG 2 cut(s) 758, 860
MspCI CTTAAG 1 cut(s) 899
MspI CCGG 2 cut(s) 237, 260
MspR9I CCNGG 2 cut(s) 66, 770
MunI CAATTG 1 cut(s) 867
MvaI CCWGG 2 cut(s) 66, 770
MwoI GCNNNNNNNGC 3 cut(s) 161, 365, 479
NdeII GATC 6 cut(s) 339, 456, 528, 684, 744, 852
NlaIII CATG 6 cut(s) 79, 224, 346, 535, 637, 850
NlaIV GGNNCC 3 cut(s) 247, 615, 644
NmuCI GTSAC 2 cut(s) 232, 862
NsiI ATGCAT 1 cut(s) 946
NspI RCATGY 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 758
PceI AGGCCT 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 815
PfeI GAWTC 1 cut(s) 298
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 2 cut(s) 448, 472
Psp124BI GAGCTC 2 cut(s) 329, 550
Psp6I CCWGG 2 cut(s) 64, 768
PspGI CCWGG 2 cut(s) 64, 768
PspN4I GGNNCC 3 cut(s) 247, 615, 644
RsaI GTAC 2 cut(s) 247, 398
RsaNI GTAC 2 cut(s) 246, 397
RseI CAYNNNNRTG 2 cut(s) 758, 860
SacI GAGCTC 2 cut(s) 329, 550
SaqAI TTAA 2 cut(s) 497, 900
SatI GCNGC 2 cut(s) 447, 471
Sau3AI GATC 6 cut(s) 339, 456, 528, 684, 744, 852
ScrFI CCNGG 2 cut(s) 66, 770
SduI GDGCHC 2 cut(s) 329, 550
SfaNI GCATC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 758, 860
SmlI CTYRAG 2 cut(s) 654, 899
SmoI CTYRAG 2 cut(s) 654, 899
Sse9I AATT 7 cut(s) 104, 150, 422, 692, 867, 905, 928
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 2 cut(s) 27, 470
SspMI CTAG 1 cut(s) 800
SstI GAGCTC 2 cut(s) 329, 550
StuI AGGCCT 1 cut(s) 64
StyD4I CCNGG 2 cut(s) 64, 768
TaaI ACNGT 4 cut(s) 373, 436, 663, 676
TaqI TCGA 1 cut(s) 102
TasI AATT 7 cut(s) 104, 150, 422, 692, 867, 905, 928
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 497, 900
Tru9I TTAA 2 cut(s) 497, 900
TscAI CASTG 8 cut(s) 49, 93, 237, 270, 606, 666, 727, 867
TseFI GTSAC 2 cut(s) 232, 862
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 232, 862
TspDTI ATGAA 2 cut(s) 406, 835
TspGWI ACGGA 2 cut(s) 165, 932
TspRI CASTG 8 cut(s) 49, 93, 237, 270, 606, 666, 727, 867
Vha464I CTTAAG 1 cut(s) 899
XapI RAATTY 2 cut(s) 104, 905
XceI RCATGY 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 815
XspI CTAG 1 cut(s) 800
Zsp2I ATGCAT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.