RLG00000014295

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
50844945 .. 50866584
21640 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014295

Sequence Viewer

Length: 873 bp
ATGTTTGGTTTCAACATTATGAAAGTAATGTGGAGATCTTACCCGAATGACAAGTTATTGCTTGTGCAAGCATTACGGAAGGGGGCAGATGTTGTTGCAGTAACAGGAGATGACACTAATGATGCTCCTGCCCTTCATGAGGGACATTCTGTGTATGCAAATATTCAGAAATTTATCCAATTCCAGCTAACTGCTAACGTTGCTGCTCTTACAATTAAAGTTGTTGCAGCAATATCCTTCGGTTGTGTTCCTTTAAATGCCGTACAGCTTCTGTGGGTTAACTTGATCATTAATACTCTAGGAGCACTTGCATTAGCAACTGAACCACCTACTAACGACCTTATGCATAGAACACCAGTTAGCAGAAGGGCACCTCTTATAACCAACATCATGTGGAGGAACATTATCGTTCAGGCTGTTTATCAAATTATTGTGCTCCTTGTCCTCGACTTTTTGGGTAATAGCATTCCTGGTCTGAAAGTGGACAACGTACAAGCCGTTATGTTGAAACATACACTGATATTCAATGCTTTTGTCTTCTGCCAAATTTTTAATGTTTTTAATGCTCGAAAGCCTGAAGAACTGAATTTCTTCAGTGGAGTGACCAAGAACTACCTCTTTATGGGAATAATAGGAGCCACATTTTTAAGTCAGATAATCATTATTCAGCTTCTTGGGAGATTCACGAAAACAACGGTACTTGATTGGCAGCAATGGCTTATTTGCTTTGGTATTGCTATCGTCAGCTGGCCTCTTGCTATTGTTGGAAAATTGATTCCCGTCCCTAAGACTTCATTTTCCCAGTGTTGCAGGCGTGCGTTTCAGCCATGCAGACAGTCACACAAGCGAAGCAGAACTTCTCGCAATACCTAA

Protein Analysis

291

Amino Acids

32.5

Weight (kDa)

9.9

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_C PF00689 83 - 259 1.9e-44 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 370
AclI AACGTT 1 cut(s) 198
AcsI RAATTY 3 cut(s) 170, 546, 586
AcuI CTGAAG 2 cut(s) 577, 597
AfaI GTAC 3 cut(s) 264, 492, 699
AfiI CCNNNNNNNGG 2 cut(s) 139, 622
AgsI TTSAA 3 cut(s) 13, 508, 526
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 4 cut(s) 187, 268, 670, 747
AluI AGCT 4 cut(s) 187, 268, 670, 747
Alw21I GWGCWC 2 cut(s) 307, 438
AlwNI CAGNNNCTG 1 cut(s) 271
AoxI GGCC 1 cut(s) 749
ApeKI GCWGC 3 cut(s) 203, 227, 709
ApoI RAATTY 3 cut(s) 170, 546, 586
AseI ATTAAT 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 307, 438
BbvI GCAGC 3 cut(s) 190, 239, 721
BceAI ACGGC 2 cut(s) 245, 482
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 1 cut(s) 285
BfaI CTAG 1 cut(s) 299
BglII AGATCT 1 cut(s) 35
BisI GCNGC 3 cut(s) 204, 228, 710
BlsI GCNGC 3 cut(s) 205, 229, 711
Bme1390I CCNGG 1 cut(s) 471
BmiI GGNNCC 2 cut(s) 372, 637
BmrFI CCNGG 1 cut(s) 471
BmrI ACTGGG 1 cut(s) 796
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 796
BpiI GAAGAC 1 cut(s) 529
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 622
Bse1I ACTGG 2 cut(s) 356, 802
Bse3DI GCAATG 1 cut(s) 719
BseBI CCWGG 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 139, 622
BseMI GCAATG 1 cut(s) 719
BseNI ACTGG 2 cut(s) 356, 802
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 3 cut(s) 190, 239, 721
BshFI GGCC 1 cut(s) 751
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 2 cut(s) 307, 438
BslFI GGGAC 2 cut(s) 156, 767
BslI CCNNNNNNNGG 2 cut(s) 139, 622
BsmFI GGGAC 2 cut(s) 156, 767
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 1 cut(s) 751
Bsp1286I GDGCHC 3 cut(s) 307, 373, 438
Bsp143I GATC 2 cut(s) 35, 285
BspANI GGCC 1 cut(s) 751
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 372, 637
BspT107I GGYRCC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 719
BsrI ACTGG 2 cut(s) 356, 802
BssMI GATC 2 cut(s) 35, 285
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 697, 837
BstC8I GCNNGC 4 cut(s) 69, 749, 812, 816
BstDEI CTNAG 1 cut(s) 786
BstENI CCTNNNNNAGG 1 cut(s) 137
BstKTI GATC 2 cut(s) 38, 288
BstMBI GATC 2 cut(s) 35, 285
BstMWI GCNNNNNNNGC 2 cut(s) 200, 715
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 3 cut(s) 190, 239, 721
BstV2I GAAGAC 1 cut(s) 529
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 1 cut(s) 751
BtsIMutI CAGTG 3 cut(s) 515, 601, 809
Cac8I GCNNGC 4 cut(s) 69, 749, 812, 816
CaiI CAGNNNCTG 1 cut(s) 271
CciI TCATGA 1 cut(s) 136
Csp6I GTAC 3 cut(s) 263, 491, 698
CviAII CATG 3 cut(s) 137, 391, 828
CviQI GTAC 3 cut(s) 263, 491, 698
DdeI CTNAG 1 cut(s) 786
DpnI GATC 2 cut(s) 37, 287
DpnII GATC 2 cut(s) 35, 285
DraI TTTAAA 1 cut(s) 255
Eco57I CTGAAG 2 cut(s) 577, 597
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 348
FaeI CATG 3 cut(s) 140, 394, 831
FalI AAGNNNNNCTT 2 cut(s) 841, 873
FaqI GGGAC 2 cut(s) 156, 767
FatI CATG 3 cut(s) 136, 390, 827
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 204, 228, 710
Fsp4HI GCNGC 3 cut(s) 204, 228, 710
FspBI CTAG 1 cut(s) 299
GluI GCNGC 3 cut(s) 204, 228, 710
HaeIII GGCC 1 cut(s) 751
Hin1II CATG 3 cut(s) 140, 394, 831
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 681, 775
HpaI GTTAAC 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 280, 484
Hpy188I TCNGA 3 cut(s) 168, 477, 654
Hpy188III TCNNGA 2 cut(s) 137, 685
Hpy8I GTNNAC 2 cut(s) 280, 484
HpyAV CCTTC 4 cut(s) 73, 143, 247, 360
HpyCH4III ACNGT 2 cut(s) 697, 837
HpyCH4IV ACGT 2 cut(s) 198, 489
HpyCH4V TGCA 8 cut(s) 67, 98, 158, 227, 311, 346, 810, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 715
HpyF3I CTNAG 1 cut(s) 786
HpySE526I ACGT 2 cut(s) 198, 489
Hsp92II CATG 3 cut(s) 140, 394, 831
Ksp22I TGATCA 1 cut(s) 285
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 35, 285
LmnI GCTCC 4 cut(s) 130, 302, 441, 635
Lsp1109I GCAGC 3 cut(s) 190, 239, 721
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 299
MaeII ACGT 2 cut(s) 198, 489
MaeIII GTNAC 3 cut(s) 100, 601, 837
MalI GATC 2 cut(s) 37, 287
MboI GATC 2 cut(s) 35, 285
MboII GAAGA 3 cut(s) 529, 583, 590
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 3 cut(s) 307, 373, 438
MluCI AATT 7 cut(s) 170, 179, 213, 426, 546, 586, 770
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 6 cut(s) 133, 384, 390, 455, 626, 762
Mph1103I ATGCAT 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 7 cut(s) 216, 254, 279, 291, 552, 561, 647
MspA1I CMGCKG 1 cut(s) 747
MspR9I CCNGG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 200, 715
NdeII GATC 2 cut(s) 35, 285
NlaIII CATG 3 cut(s) 140, 394, 831
NlaIV GGNNCC 2 cut(s) 372, 637
NmuCI GTSAC 2 cut(s) 601, 837
NsiI ATGCAT 1 cut(s) 348
PagI TCATGA 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PctI GAATGC 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 681, 775
PkrI GCNGC 3 cut(s) 205, 229, 711
PshBI ATTAAT 1 cut(s) 291
PsiI TTATAA 1 cut(s) 380
Psp1406I AACGTT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 372, 637
PstNI CAGNNNCTG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 747
RsaI GTAC 3 cut(s) 264, 492, 699
RsaNI GTAC 3 cut(s) 263, 491, 698
SaqAI TTAA 7 cut(s) 216, 254, 279, 291, 552, 561, 647
SatI GCNGC 3 cut(s) 204, 228, 710
Sau3AI GATC 2 cut(s) 35, 285
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 3 cut(s) 307, 373, 438
SfaNI GCATC 1 cut(s) 112
Sse9I AATT 7 cut(s) 170, 179, 213, 426, 546, 586, 770
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 2 cut(s) 697, 837
TaiI ACGT 2 cut(s) 201, 492
TaqI TCGA 2 cut(s) 447, 568
TasI AATT 7 cut(s) 170, 179, 213, 426, 546, 586, 770
TfiI GAWTC 2 cut(s) 681, 775
Tru1I TTAA 7 cut(s) 216, 254, 279, 291, 552, 561, 647
Tru9I TTAA 7 cut(s) 216, 254, 279, 291, 552, 561, 647
TscAI CASTG 3 cut(s) 522, 601, 809
TseFI GTSAC 2 cut(s) 601, 837
TseI GCWGC 3 cut(s) 203, 227, 709
Tsp45I GTSAC 2 cut(s) 601, 837
TspDTI ATGAA 3 cut(s) 35, 125, 783
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 522, 601, 809
VspI ATTAAT 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 3 cut(s) 170, 546, 586
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.