Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012275.1

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

25 .. 732

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgatactagcaatgtgtacaagttactacgatgcctctggaattgttaaggatatggattacaatgaaaaaatgaactttgagcagattagtcaaggtatgacagcaagcagcctcagatgcatcgcattcgcacataaagaagttccagcagatgaggaagttgaggtagaccggaaagttgtgctaaaggaagatggcttgaccctattgggacttcaaaaaggtcatgtagttgcggtgactggtgatgggaccaataatgcactggcattgaaagaagctgatatagtcctttctaggggaattaaaggcacagaagttgctagagagagctcagacattgtgatcatggatgacaagtttgcttcagttgccacagttttgagatggagaagatgtgtttacaatcagatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

139

Amino Acids

15.33

Weight (kDa)

5.02

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	221, 277
AluBI	AGCT	2 cut(s)	284, 336
AluI	AGCT	2 cut(s)	284, 336
Alw21I	GWGCWC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	253, 260
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	3 cut(s)	191, 245, 384
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BclI	TGATCA	1 cut(s)	348
BfaI	CTAG	4 cut(s)	8, 300, 327, 418
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	3 cut(s)	22, 110, 132
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	250, 273
Bse3DI	GCAATG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	130, 351
BseNI	ACTGG	2 cut(s)	250, 273
BseXI	GCAGC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	2 cut(s)	228, 268
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	228, 268
BsmI	GAATGC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	348, 414
BspACI	CCGC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	129, 350
BspLI	GGNNCC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	250, 273
BssMI	GATC	2 cut(s)	348, 414
Bst4CI	ACNGT	1 cut(s)	382
BstAUI	TGTACA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	116, 337
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	351, 417
BstMBI	GATC	2 cut(s)	348, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 374
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	2 cut(s)	230, 352
CviJI	RGCY	4 cut(s)	114, 201, 284, 336
CviKI_1	RGCY	4 cut(s)	114, 201, 284, 336
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	2 cut(s)	116, 337
DpnI	GATC	2 cut(s)	350, 416
DpnII	GATC	2 cut(s)	348, 414
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	2 cut(s)	233, 355
FaiI	YATR	6 cut(s)	56, 101, 138, 231, 290, 353
FaqI	GGGAC	2 cut(s)	228, 268
FatI	CATG	2 cut(s)	229, 351
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	4 cut(s)	8, 300, 327, 418
GluI	GCNGC	1 cut(s)	112
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	2 cut(s)	233, 355
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	253, 260
Hpy166II	GTNNAC	3 cut(s)	18, 172, 406
Hpy188I	TCNGA	3 cut(s)	119, 340, 414
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	3 cut(s)	18, 172, 406
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	123, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 374
HpyF3I	CTNAG	2 cut(s)	116, 337
Hsp92II	CATG	2 cut(s)	233, 355
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 414
LpnPI	CCDG	5 cut(s)	24, 162, 188, 231, 254
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	3 cut(s)	22, 110, 132
MaeI	CTAG	4 cut(s)	8, 300, 327, 418
MaeIII	GTNAC	2 cut(s)	23, 241
MalI	GATC	2 cut(s)	350, 416
MboI	GATC	2 cut(s)	348, 414
MboII	GAAGA	2 cut(s)	206, 408
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	2 cut(s)	42, 306
MnlI	CCTC	4 cut(s)	46, 125, 151, 160
Mph1103I	ATGCAT	1 cut(s)	125
MseI	TTAA	2 cut(s)	48, 309
MspI	CCGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	120, 374
NdeII	GATC	2 cut(s)	348, 414
NlaIII	CATG	2 cut(s)	233, 355
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	125
PctI	GAATGC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	48, 309
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	348, 414
Sau96I	GGNCC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	5 cut(s)	100, 171, 229, 286, 338
SfaNI	GCATC	3 cut(s)	22, 110, 132
SinI	GGWCC	1 cut(s)	255
Sse9I	AATT	2 cut(s)	42, 306
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	4 cut(s)	8, 300, 327, 418
SstI	GAGCTC	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	382
TasI	AATT	2 cut(s)	42, 306
TatI	WGTACW	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	48, 309
Tru9I	TTAA	2 cut(s)	48, 309
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	81, 89
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	4 cut(s)	8, 300, 327, 418
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.