Rmu_sc0001241.1_g000003

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001241.1
Physical Location & Seq
Reverse (-)
5243 .. 6354
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001241.1_g000003.1.cds

Sequence Viewer

Length: 1002 bp
atggtgctaaagctctctgcttgtgagaccatgggatctgctacaacaacttgtaccgacaaaacaggtactctgaccatgaaccagatgaaggtgactaagttttggttggggaaagaatctgtggaagaagaagcttattcatctatttctccttatgttcttgacttgatccaagaaggggttgctctcaatacaactggtaatgtgtacaggcctagcttggattccgaagttgagatctctggcagtccaactgaaaaagccattctttcatgggcggaacatgggtcaaagatggatatggagaaagtggtgaagacttgtagcattctccatgtcgaagcctttaatttaaagaagaaacaaagtggagttctagtgaagagaaaggcagataactccagccatgtacactggaaaggagcagcagagatgatactagcaatgtgcacaagttactacaatgcgtctggacttgttaaggatatggatgagaatgcaaaaaggaagtttgagcatattattcaaggtatggcagctagcagcctcagatgcatagcatttgtacataaacaagttccagcagaagagcgactaaatgcagaccagaaatttgtgttaaaggaagatggattaaccctattgggacttgtgggtcttaaggatccatgtcgtccaggtgtgaaaaaagcagttgaagaatgtcaatatgcagggatatttaatgagttcaatgcaagaaagctagagaagaagaatgtcttcaagggaatacacaccaacaagttgtttatggggatcattgcagtgacaattgttcttcaggttgtgatggtggaggttctcaagaaatttgcaaatacagaaaggttgaattggggacaatggggtgtatgcattgggattgcagtcatctcttggccaattggttggctaatgcagtgtatacctgttcctgagaaacccatattcaactatctgaagatgaagaaaaaataa

Protein Analysis

333

Amino Acids

37.14

Weight (kDa)

8.97

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 657
AccI GTMKAC 1 cut(s) 949
AciI CCGC 1 cut(s) 281
AclWI GGATC 5 cut(s) 43, 166, 662, 675, 809
AcoI YGGCCR 1 cut(s) 923
AcsI RAATTY 2 cut(s) 614, 854
AcuI CTGAAG 1 cut(s) 809
AfaI GTAC 5 cut(s) 55, 70, 212, 414, 570
AfiI CCNNNNNNNGG 2 cut(s) 91, 181
AflII CTTAAG 1 cut(s) 662
AgsI TTSAA 6 cut(s) 530, 701, 736, 769, 877, 976
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 5 cut(s) 13, 137, 222, 542, 748
AluI AGCT 5 cut(s) 13, 137, 222, 542, 748
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 451
AlwI GGATC 5 cut(s) 43, 166, 662, 675, 809
AoxI GGCC 2 cut(s) 215, 923
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 3 cut(s) 428, 539, 546
ApoI RAATTY 2 cut(s) 614, 854
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 106, 328
AsuNHI GCTAGC 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 925
BamHI GGATCC 1 cut(s) 667
BbsI GAAGAC 2 cut(s) 326, 757
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 440, 551, 558
BccI CCATC 3 cut(s) 292, 626, 829
BciT130I CCWGG 1 cut(s) 681
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 5 cut(s) 219, 380, 443, 543, 749
BfrI CTTAAG 1 cut(s) 662
BglII AGATCT 1 cut(s) 240
BisI GCNGC 3 cut(s) 429, 540, 547
BlsI GCNGC 3 cut(s) 430, 541, 548
Bme1390I CCNGG 1 cut(s) 681
BmiI GGNNCC 1 cut(s) 669
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 545
BmtI GCTAGC 1 cut(s) 546
BpiI GAAGAC 2 cut(s) 326, 757
BpmI CTGGAG 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 181
Bse1I ACTGG 2 cut(s) 205, 422
Bse3DI GCAATG 2 cut(s) 453, 804
BseBI CCWGG 1 cut(s) 681
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 499
BseLI CCNNNNNNNGG 2 cut(s) 91, 181
BseMI GCAATG 2 cut(s) 453, 804
BseMII CTCAG 2 cut(s) 565, 951
BseNI ACTGG 2 cut(s) 205, 422
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 3 cut(s) 440, 551, 558
BshFI GGCC 2 cut(s) 217, 925
BsiHKAI GWGCWC 1 cut(s) 455
BslFI GGGAC 2 cut(s) 663, 897
BslI CCNNNNNNNGG 2 cut(s) 91, 181
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 663, 897
BsmI GAATGC 2 cut(s) 330, 505
BsnI GGCC 2 cut(s) 217, 925
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 455
Bsp1407I TGTACA 3 cut(s) 210, 412, 568
Bsp143I GATC 5 cut(s) 35, 171, 240, 667, 801
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 1 cut(s) 281
BspANI GGCC 2 cut(s) 217, 925
BspCNI CTCAG 2 cut(s) 564, 952
BspLI GGNNCC 1 cut(s) 669
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 5 cut(s) 43, 166, 662, 675, 809
BspQI GCTCTTC 1 cut(s) 585
BspTI CTTAAG 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 453, 804
BsrGI TGTACA 3 cut(s) 210, 412, 568
BsrI ACTGG 2 cut(s) 205, 422
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 5 cut(s) 35, 171, 240, 667, 801
BssNAI GTATAC 1 cut(s) 950
BssT1I CCWWGG 1 cut(s) 30
Bst1107I GTATAC 1 cut(s) 950
Bst2UI CCWGG 1 cut(s) 681
Bst6I CTCTTC 2 cut(s) 380, 585
BstAFI CTTAAG 1 cut(s) 662
BstAUI TGTACA 3 cut(s) 210, 412, 568
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 99, 551, 960
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 499
BstKTI GATC 5 cut(s) 38, 174, 243, 670, 804
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 35, 171, 240, 667, 801
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstNI CCWGG 1 cut(s) 681
BstSCI CCNGG 1 cut(s) 679
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 3 cut(s) 440, 551, 558
BstV2I GAAGAC 2 cut(s) 326, 757
BstX2I RGATCY 3 cut(s) 35, 240, 667
BstXI CCANNNNNNTGG 1 cut(s) 933
BstYI RGATCY 3 cut(s) 35, 240, 667
BstZ17I GTATAC 1 cut(s) 950
BsuRI GGCC 2 cut(s) 217, 925
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 499
BtsI GCAGTG 2 cut(s) 816, 950
BtsIMutI CAGTG 3 cut(s) 415, 816, 950
Cac8I GCNNGC 1 cut(s) 544
CseI GACGC 1 cut(s) 459
Csp6I GTAC 5 cut(s) 54, 69, 211, 413, 569
CviAII CATG 7 cut(s) 31, 79, 276, 287, 338, 410, 672
CviQI GTAC 5 cut(s) 54, 69, 211, 413, 569
DdeI CTNAG 3 cut(s) 99, 551, 960
DpnI GATC 5 cut(s) 37, 173, 242, 669, 803
DpnII GATC 5 cut(s) 35, 171, 240, 667, 801
DraI TTTAAA 1 cut(s) 357
DrdI GACNNNNNNGTC 1 cut(s) 657
DseDI GACNNNNNNGTC 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 923
Eam1104I CTCTTC 2 cut(s) 380, 585
EarI CTCTTC 2 cut(s) 380, 585
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 2 cut(s) 560, 902
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 7 cut(s) 34, 82, 279, 290, 341, 413, 675
FalI AAGNNNNNCTT 4 cut(s) 255, 287, 749, 781
FaqI GGGAC 2 cut(s) 663, 897
FatI CATG 7 cut(s) 30, 78, 275, 286, 337, 409, 671
FblI GTMKAC 1 cut(s) 949
Fnu4HI GCNGC 3 cut(s) 429, 540, 547
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 3 cut(s) 429, 540, 547
FspBI CTAG 5 cut(s) 219, 380, 443, 543, 749
GluI GCNGC 3 cut(s) 429, 540, 547
GsuI CTGGAG 1 cut(s) 388
HaeIII GGCC 2 cut(s) 217, 925
HgaI GACGC 1 cut(s) 459
Hin1II CATG 7 cut(s) 34, 82, 279, 290, 341, 413, 675
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 2 cut(s) 119, 227
HphI GGTGA 2 cut(s) 106, 328
Hpy166II GTNNAC 4 cut(s) 211, 415, 453, 950
Hpy188I TCNGA 4 cut(s) 75, 232, 554, 984
Hpy188III TCNNGA 4 cut(s) 164, 474, 850, 959
Hpy8I GTNNAC 4 cut(s) 211, 415, 453, 950
HpyAV CCTTC 2 cut(s) 85, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 3 cut(s) 99, 551, 960
Hsp92II CATG 7 cut(s) 34, 82, 279, 290, 341, 413, 675
Kzo9I GATC 5 cut(s) 35, 171, 240, 667, 801
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 3 cut(s) 440, 551, 558
LweI GCATC 1 cut(s) 545
MaeI CTAG 5 cut(s) 219, 380, 443, 543, 749
MaeIII GTNAC 3 cut(s) 94, 458, 811
MalI GATC 5 cut(s) 37, 173, 242, 669, 803
MboI GATC 5 cut(s) 35, 171, 240, 667, 801
MfeI CAATTG 2 cut(s) 816, 927
MflI RGATCY 3 cut(s) 35, 240, 667
MhlI GDGCHC 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 925
MluCI AATT 6 cut(s) 352, 614, 816, 854, 877, 927
MluNI TGGCCA 1 cut(s) 925
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 2 cut(s) 560, 835
Mox20I TGGCCA 1 cut(s) 925
Mph1103I ATGCAT 2 cut(s) 560, 902
MroXI GAANNNNTTC 1 cut(s) 764
MscI TGGCCA 1 cut(s) 925
MseI TTAA 7 cut(s) 351, 356, 483, 623, 638, 663, 726
MslI CAYNNNNRTG 1 cut(s) 809
Msp20I TGGCCA 1 cut(s) 925
MspCI CTTAAG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 681
MunI CAATTG 2 cut(s) 816, 927
Mva1269I GAATGC 2 cut(s) 330, 505
MvaI CCWGG 1 cut(s) 681
MwoI GCNNNNNNNGC 1 cut(s) 555
NcoI CCATGG 1 cut(s) 30
NdeII GATC 5 cut(s) 35, 171, 240, 667, 801
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 7 cut(s) 34, 82, 279, 290, 341, 413, 675
NlaIV GGNNCC 1 cut(s) 669
NmuCI GTSAC 2 cut(s) 94, 811
NsiI ATGCAT 2 cut(s) 560, 902
PceI AGGCCT 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 585
PctI GAATGC 2 cut(s) 330, 505
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 2 cut(s) 119, 227
PkrI GCNGC 3 cut(s) 430, 541, 548
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 1 cut(s) 669
PsuI RGATCY 3 cut(s) 35, 240, 667
RsaI GTAC 5 cut(s) 55, 70, 212, 414, 570
RsaNI GTAC 5 cut(s) 54, 69, 211, 413, 569
RseI CAYNNNNRTG 1 cut(s) 809
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 7 cut(s) 351, 356, 483, 623, 638, 663, 726
SatI GCNGC 3 cut(s) 429, 540, 547
Sau3AI GATC 5 cut(s) 35, 171, 240, 667, 801
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 2 cut(s) 662, 848
SmoI CTYRAG 2 cut(s) 662, 848
Sse9I AATT 6 cut(s) 352, 614, 816, 854, 877, 927
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 1 cut(s) 281
SspMI CTAG 5 cut(s) 219, 380, 443, 543, 749
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 679
StyI CCWWGG 1 cut(s) 30
TaqI TCGA 1 cut(s) 342
TasI AATT 6 cut(s) 352, 614, 816, 854, 877, 927
TatI WGTACW 3 cut(s) 210, 412, 568
TfiI GAWTC 2 cut(s) 119, 227
Tru1I TTAA 7 cut(s) 351, 356, 483, 623, 638, 663, 726
Tru9I TTAA 7 cut(s) 351, 356, 483, 623, 638, 663, 726
TscAI CASTG 3 cut(s) 422, 816, 950
TseFI GTSAC 2 cut(s) 94, 811
TseI GCWGC 3 cut(s) 428, 539, 546
Tsp45I GTSAC 2 cut(s) 94, 811
TspDTI ATGAA 4 cut(s) 95, 104, 132, 264
TspRI CASTG 3 cut(s) 422, 816, 950
Vha464I CTTAAG 1 cut(s) 662
VneI GTGCAC 1 cut(s) 451
XapI RAATTY 2 cut(s) 614, 854
XmiI GTMKAC 1 cut(s) 949
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 5 cut(s) 219, 380, 443, 543, 749
Zsp2I ATGCAT 2 cut(s) 560, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.