Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001949.1

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

87356 .. 90460

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001949.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3105 bp

atgagtaggtcaaccttcagtgccctgcatgaaaaattgggaagcaatgttcggttgattcttgatgttccgagcagtagtcttggcataagcaaaagaaaatggcattctgctttcattaccatctactgctctagagccttcctctctttacgaccttctactcttcccaaacataccaactccacattcatatctcgcacactctcttactccattgttagcgtagagccagtctcggtcccagccgttaatggattccaagcagaccaaaaaagcctcactgagcttgtgagggagaaaaatctcaacgagctctcggagcttggaggggttgaagaagtagcatcagctctcaaaactgatgcagagcatggaatcaatggtgatgatgctgaagatattgcgcgcagacacgaagtatttggttccaatacatacaagaaaccgccaacgcaaggattcctccattttgtgtgggaagccttcaaagacctcacaatcctaatcctcttgggatgtgctgcgctttctcttggtttcggcatcaaagaacatggattgaaagacggttggattgacggtggaagcatttgtctcgcagtcattctggtcatttctgtttcagccattagcaactacagacagagcagacagtttgacaaattgtccaaaatcagtaacaatctccaaattgaggctgtgagaaatggaaggcgccagcagatttccatatttgaaattgtggtaggtgatgtcatttgtttgaagattggagaccaagttccagctgatggattgcttttagatggccattctttatcagtagatgaatcaagcatgacaggggagagcgaccatgttgaggtaagtgtcactgagaatcctttcttgttctctgggactaaaatagctgatggttatggtcgcatgcttgtcacgtcagtcgggatgaacacaaactggggtgaaatgatgagccaaattagccaagacaccagtgaaaagacacctctgcaagcatgtttagacaagctaacttcgtccatcggtaaagttggtttggcagttgctttctttgttcttgtagtcatgttggtccggtacttcacagggaatacagaggatgacaatggaaacaaagagtacaatggcagcaagacaaaatctaatgacataataaatgccgttattgggattgtagcagctgccgttacaattgttgtggtggcaattccagaaggtctaccattagctgtgactctcactcttgcttattccatgaagagaatgatggttgataacgcaatggtgcggaagctctctgcttgtgagaccatgggatctgctacaacaatttgtactgacaaaacaggtactctgaccatgaaccagatgaaggtgactaagttttggttggggaaagaaagtgtggaagaagaagcttattcatctatctctccttatattctcgacttgatccaagaaggggttgctcttaatacaactggtggtgtgtacaggcctagcttggattctgaaatggagatctcaggcagtccaactgaaaaggctattctttcatgggcggtacatgggttgaacatggatatggagaaagtcgggaagagttctagcattctccacgttgaagcctttaattcgaagaagaaacagagtggagttctggtgaagagaaaggctgacagctcagtccatgtacactggaaaggggcagcagagatgatactagcaatgtgcacaagttactacaatgcctctggagttgtcaaggatattgatacaattgaaaaaaggaactttgagcagattattcaaggtatggcagctagcagcctcagatgcatagcattcgcacataaagaagttgcagcagaggggcaagttgaaggagaccagaaagttgcgctaaaggaagatggtttgaccctactgggagttgtcggtcttaaagatccatgtcgtcccggtgtgaagaaagcagttgaagaatgccaatatgcaggggtgaacgtcaaaatgattaccggcgacaatgttttcactgcaaaagccatagccactgaatgtgggatactcaggcctggtcaagacatgcttggagtagtgatagaaggtgtggaatttcgcaactacacgccagaacagagaatggagaaagttgagaaaatttgtgtgatggctaggtcttctccttttgataagcttctaatggtgcaatgcttgaaacagaaaggtcatgtagttgcagtgacgggtgatggcactaatgatgcaccggcattgaaagaagctgatataggactttccatggggattcaaggcacagaagttgccaaggaaagctcagatattgtgatcatggatgataactttgcttcagttgctacagttttgatgtggggaagatgtgtctacaataatatccagaagttcatacaattccaactcaccgtcaatgttgcagctcttgtgatcaactttgtggcagcagtttcagcaggtcaagtcccattaacagcagttcaattattgtgggtaaacttgatcatggacacacttggagctcttgctcttgccacagaaaaacccacaacagaacttatggagaagccaccagtgggaaggacagcgcctctcatcacaaacatcatgtggaggaacctcttgcctcaagctctataccagataaccgtcctcttgatcttacaattcaggggcaaagcaatcttcggtgtcagtgataaggtaaaggacacattgatcttcaacacttttgtgctttgccagatatttaatgagttcaatgcaagaaagctagagaagaagaatgtcttcaagggaatacacaccaacaagttgtttatggggatcatcgcggtgacaattgttcttcaggttgtgatggttgaggttctcaagaaatttgcagatacagagaggctgaattggggacaatggggtgtatgcattgggattgcagtcatctcttggccaattggttggctagtcaagtgtatccccgttccagagaaacccatattcagctatctgaagatgaagaaaaataagcactctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1034

Amino Acids

112.92

Weight (kDa)

6.99

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1712
Acc36I	ACCTGC	1 cut(s)	2513
AccB1I	GGYRCC	1 cut(s)	717
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	1246, 2436
AccII	CGCG	2 cut(s)	409, 2900
AciI	CCGC	4 cut(s)	449, 1315, 1589, 2900
AclWI	GGATC	4 cut(s)	1351, 1474, 1970, 2900
AcoI	YGGCCR	2 cut(s)	811, 3014
AcsI	RAATTY	3 cut(s)	2144, 2190, 2945
AcuI	CTGAAG	4 cut(s)	417, 2385, 2900, 3095
AcyI	GRCGYC	1 cut(s)	718
AfaI	GTAC	7 cut(s)	1106, 1148, 1363, 1378, 1520, 1593, 1722
AfiI	CCNNNNNNNGG	8 cut(s)	458, 697, 794, 865, 1194, 1399, 1489, 2642
AhdI	GACNNNNNGTC	1 cut(s)	667
AjiI	CACGTC	1 cut(s)	942
AjnI	CCWGG	1 cut(s)	2104
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AleI	CACNNNNGTG	1 cut(s)	2798
AloI	GAACNNNNNNTCC	4 cut(s)	33, 65, 768, 800
Alw21I	GWGCWC	3 cut(s)	318, 1763, 2590
Alw26I	GTCTC	5 cut(s)	241, 602, 771, 1328, 1908
Alw44I	GTGCAC	1 cut(s)	1759
AlwI	GGATC	4 cut(s)	1351, 1474, 1970, 2900
AoxI	GGCC	4 cut(s)	811, 1523, 2102, 3014
ApaLI	GTGCAC	1 cut(s)	1759
ApoI	RAATTY	3 cut(s)	2144, 2190, 2945
Asp700I	GAANNNNTTC	2 cut(s)	887, 2855
AspLEI	GCGC	6 cut(s)	409, 411, 529, 720, 1930, 2656
AspS9I	GGNCC	2 cut(s)	241, 1099
AsuC2I	CCSGG	1 cut(s)	1989
AsuHPI	GGTGA	9 cut(s)	398, 764, 980, 1414, 1702, 2041, 2291, 2464, 2914
AsuII	TTCGAA	1 cut(s)	1664
AsuNHI	GCTAGC	1 cut(s)	1850
AvaII	GGWCC	2 cut(s)	241, 1099
BaeGI	GKGCMC	2 cut(s)	25, 1763
BaeI	ACNNNNGTAYC	2 cut(s)	1583, 1616
BalI	TGGCCA	2 cut(s)	813, 3016
BanI	GGYRCC	1 cut(s)	717
BanII	GRGCYC	2 cut(s)	318, 2590
BbsI	GAAGAC	2 cut(s)	2202, 2848
Bbv12I	GWGCWC	3 cut(s)	318, 1763, 2590
BceAI	ACGGC	3 cut(s)	233, 1172, 1196
BcgI	CGANNNNNNTGC	4 cut(s)	580, 614, 1855, 1889
BciT130I	CCWGG	1 cut(s)	2106
BciVI	GTATCC	2 cut(s)	2088, 3050
BclI	TGATCA	3 cut(s)	2379, 2496, 2568
BcnI	CCSGG	1 cut(s)	1989
BcoDI	GTCTC	5 cut(s)	241, 602, 771, 1328, 1908
BfaI	CTAG	8 cut(s)	135, 1527, 1635, 1751, 1851, 2205, 2840, 3029
BfmI	CTRYAG	2 cut(s)	640, 2409
BfoI	RGCGCY	2 cut(s)	721, 2657
BfuAI	ACCTGC	1 cut(s)	2513
BfuI	GTATCC	2 cut(s)	2088, 3050
BglII	AGATCT	1 cut(s)	1548
Bme1390I	CCNGG	2 cut(s)	1989, 2106
Bme18I	GGWCC	2 cut(s)	241, 1099
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmgBI	CACGTC	1 cut(s)	942
BmgT120I	GGNCC	2 cut(s)	241, 1099
BmiI	GGNNCC	4 cut(s)	243, 430, 719, 2684
BmrFI	CCNGG	2 cut(s)	1989, 2106
BmrI	ACTGGG	2 cut(s)	973, 1964
BmsI	GCATC	6 cut(s)	355, 356, 382, 555, 1853, 2284
BmtI	GCTAGC	1 cut(s)	1854
BmuI	ACTGGG	2 cut(s)	973, 1964
BpiI	GAAGAC	2 cut(s)	2202, 2848
BplI	GAGNNNNNCTC	4 cut(s)	129, 161, 221, 253
BpmI	CTGGAG	1 cut(s)	1803
Bpu14I	TTCGAA	1 cut(s)	1664
BpuEI	CTTGAG	2 cut(s)	2679, 2924
BpuMI	CCSGG	1 cut(s)	1989
BsaHI	GRCGYC	1 cut(s)	718
BsaI	GGTCTC	3 cut(s)	771, 1328, 1908
BsaJI	CCNNGG	3 cut(s)	1338, 2331, 2358
BsaWI	WCCGGW	1 cut(s)	1101
BsaXI	ACNNNNNCTCC	4 cut(s)	768, 798, 1674, 1704
Bsc4I	CCNNNNNNNGG	8 cut(s)	458, 697, 794, 865, 1194, 1399, 1489, 2642
Bse118I	RCCGGY	2 cut(s)	2048, 2299
Bse1I	ACTGG	7 cut(s)	233, 968, 999, 1513, 1730, 1959, 2639
Bse3DI	GCAATG	4 cut(s)	52, 1314, 1761, 2246
BseBI	CCWGG	1 cut(s)	2106
BseDI	CCNNGG	3 cut(s)	1338, 2331, 2358
BseGI	GGATG	4 cut(s)	524, 957, 1132, 2392
BseLI	CCNNNNNNNGG	8 cut(s)	458, 697, 794, 865, 1194, 1399, 1489, 2642
BseMI	GCAATG	4 cut(s)	52, 1314, 1761, 2246
BseMII	CTCAG	7 cut(s)	276, 870, 1566, 1725, 1873, 2113, 2382
BseNI	ACTGG	7 cut(s)	233, 968, 999, 1513, 1730, 1959, 2639
BsePI	GCGCGC	1 cut(s)	407
BseSI	GKGCMC	2 cut(s)	25, 1763
BseYI	CCCAGC	1 cut(s)	244
Bsh1236I	CGCG	2 cut(s)	409, 2900
BshFI	GGCC	4 cut(s)	813, 1525, 2104, 3016
BshNI	GGYRCC	1 cut(s)	717
BsiHKAI	GWGCWC	3 cut(s)	318, 1763, 2590
BsiSI	CCGG	4 cut(s)	1102, 1989, 2049, 2300
BslFI	GGGAC	5 cut(s)	227, 916, 1971, 2516, 2988
BslI	CCNNNNNNNGG	8 cut(s)	458, 697, 794, 865, 1194, 1399, 1489, 2642
BsmAI	GTCTC	5 cut(s)	241, 602, 771, 1328, 1908
BsmFI	GGGAC	5 cut(s)	227, 916, 1971, 2516, 2988
BsmI	GAATGC	4 cut(s)	106, 1638, 1871, 2018
BsnI	GGCC	4 cut(s)	813, 1525, 2104, 3016
Bso31I	GGTCTC	3 cut(s)	771, 1328, 1908
Bsp119I	TTCGAA	1 cut(s)	1664
Bsp1286I	GDGCHC	4 cut(s)	25, 318, 1763, 2590
Bsp1407I	TGTACA	2 cut(s)	1518, 1720
Bsp19I	CCATGG	2 cut(s)	1338, 2331
BspACI	CCGC	4 cut(s)	449, 1315, 1589, 2900
BspANI	GGCC	4 cut(s)	813, 1525, 2104, 3016
BspCNI	CTCAG	7 cut(s)	277, 871, 1565, 1724, 1872, 2112, 2381
BspFNI	CGCG	2 cut(s)	409, 2900
BspLI	GGNNCC	4 cut(s)	243, 430, 719, 2684
BspMI	ACCTGC	1 cut(s)	2513
BspOI	GCTAGC	1 cut(s)	1854
BspPI	GGATC	4 cut(s)	1351, 1474, 1970, 2900
BspT104I	TTCGAA	1 cut(s)	1664
BspT107I	GGYRCC	1 cut(s)	717
BspTNI	GGTCTC	3 cut(s)	771, 1328, 1908
BsrDI	GCAATG	4 cut(s)	52, 1314, 1761, 2246
BsrFI	RCCGGY	2 cut(s)	2048, 2299
BsrGI	TGTACA	2 cut(s)	1518, 1720
BsrI	ACTGG	7 cut(s)	233, 968, 999, 1513, 1730, 1959, 2639
BssAI	RCCGGY	2 cut(s)	2048, 2299
BssECI	CCNNGG	3 cut(s)	1338, 2331, 2358
BssHII	GCGCGC	1 cut(s)	407
BssNI	GRCGYC	1 cut(s)	718
BssT1I	CCWWGG	3 cut(s)	1338, 2331, 2358
Bst2UI	CCWGG	1 cut(s)	2106
Bst4CI	ACNGT	6 cut(s)	572, 584, 657, 2413, 2476, 2716
Bst6I	CTCTTC	4 cut(s)	171, 1280, 1622, 1688
BstACI	GRCGYC	1 cut(s)	718
BstAUI	TGTACA	2 cut(s)	1518, 1720
BstBI	TTCGAA	1 cut(s)	1664
BstC8I	GCNNGC	5 cut(s)	409, 722, 932, 1020, 1852
BstDEI	CTNAG	8 cut(s)	285, 879, 1407, 1552, 1711, 1859, 2099, 2368
BstDSI	CCRYGG	2 cut(s)	1338, 2331
BstF5I	GGATG	4 cut(s)	524, 957, 1132, 2392
BstFNI	CGCG	2 cut(s)	409, 2900
BstH2I	RGCGCY	2 cut(s)	721, 2657
BstHHI	GCGC	6 cut(s)	409, 411, 529, 720, 1930, 2656
BstMAI	GTCTC	5 cut(s)	241, 602, 771, 1328, 1908
BstMWI	GCNNNNNNNGC	5 cut(s)	322, 987, 1863, 2405, 2519
BstNI	CCWGG	1 cut(s)	2106
BstNSI	RCATGY	3 cut(s)	934, 1026, 2119
BstSCI	CCNGG	2 cut(s)	1987, 2104
BstSFI	CTRYAG	2 cut(s)	640, 2409
BstSLI	GKGCMC	2 cut(s)	25, 1763
BstUI	CGCG	2 cut(s)	409, 2900
BstV2I	GAAGAC	2 cut(s)	2202, 2848
BstX2I	RGATCY	3 cut(s)	1343, 1548, 1975
BstXI	CCANNNNNNTGG	1 cut(s)	3024
BstYI	RGATCY	3 cut(s)	1343, 1548, 1975
BsuI	GTATCC	2 cut(s)	2088, 3050
BsuRI	GGCC	4 cut(s)	813, 1525, 2104, 3016
BtgI	CCRYGG	2 cut(s)	1338, 2331
BtgZI	GCGATG	1 cut(s)	2881
BtrI	CACGTC	1 cut(s)	942
BtsCI	GGATG	4 cut(s)	524, 957, 1132, 2392
BtsI	GCAGTG	2 cut(s)	2064, 2277
BveI	ACCTGC	1 cut(s)	2513
Cac8I	GCNNGC	5 cut(s)	409, 722, 932, 1020, 1852
CfoI	GCGC	6 cut(s)	409, 411, 529, 720, 1930, 2656
Cfr10I	RCCGGY	2 cut(s)	2048, 2299
Cfr13I	GGNCC	2 cut(s)	241, 1099
Csp6I	GTAC	7 cut(s)	1105, 1147, 1362, 1377, 1519, 1592, 1721
CspCI	CAANNNNNGTGG	4 cut(s)	1206, 1241, 2537, 2572
CviQI	GTAC	7 cut(s)	1105, 1147, 1362, 1377, 1519, 1592, 1721
DdeI	CTNAG	8 cut(s)	285, 879, 1407, 1552, 1711, 1859, 2099, 2368
DinI	GGCGCC	1 cut(s)	719
DrdI	GACNNNNNNGTC	1 cut(s)	1712
DriI	GACNNNNNGTC	1 cut(s)	667
DseDI	GACNNNNNNGTC	1 cut(s)	1712
EaeI	YGGCCR	2 cut(s)	811, 3014
Eam1104I	CTCTTC	4 cut(s)	171, 1280, 1622, 1688
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EarI	CTCTTC	4 cut(s)	171, 1280, 1622, 1688
Ecl136II	GAGCTC	2 cut(s)	316, 2588
Eco130I	CCWWGG	3 cut(s)	1338, 2331, 2358
Eco147I	AGGCCT	2 cut(s)	1525, 2104
Eco24I	GRGCYC	2 cut(s)	318, 2590
Eco31I	GGTCTC	3 cut(s)	771, 1328, 1908
Eco47I	GGWCC	2 cut(s)	241, 1099
Eco53kI	GAGCTC	2 cut(s)	316, 2588
Eco57I	CTGAAG	4 cut(s)	417, 2385, 2900, 3095
EcoICRI	GAGCTC	2 cut(s)	316, 2588
EcoRII	CCWGG	1 cut(s)	2104
EcoT14I	CCWWGG	3 cut(s)	1338, 2331, 2358
EcoT22I	ATGCAT	2 cut(s)	1868, 2993
EcoT38I	GRGCYC	2 cut(s)	318, 2590
EgeI	GGCGCC	1 cut(s)	719
EheI	GGCGCC	1 cut(s)	719
ErhI	CCWWGG	3 cut(s)	1338, 2331, 2358
FalI	AAGNNNNNCTT	4 cut(s)	2103, 2135, 2840, 2872
FaqI	GGGAC	5 cut(s)	227, 916, 1971, 2516, 2988
FbaI	TGATCA	3 cut(s)	2379, 2496, 2568
FblI	GTMKAC	2 cut(s)	1246, 2436
FokI	GGATG	4 cut(s)	531, 964, 1139, 2399
FriOI	GRGCYC	2 cut(s)	318, 2590
FspBI	CTAG	8 cut(s)	135, 1527, 1635, 1751, 1851, 2205, 2840, 3029
GlaI	GCGC	6 cut(s)	408, 410, 528, 719, 1929, 2655
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	1803
HaeII	RGCGCY	2 cut(s)	721, 2657
HaeIII	GGCC	4 cut(s)	813, 1525, 2104, 3016
HapII	CCGG	4 cut(s)	1102, 1989, 2049, 2300
HhaI	GCGC	6 cut(s)	409, 411, 529, 720, 1930, 2656
Hin1I	GRCGYC	1 cut(s)	718
Hin6I	GCGC	6 cut(s)	407, 409, 527, 718, 1928, 2654
HinP1I	GCGC	6 cut(s)	407, 409, 527, 718, 1928, 2654
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	1443, 2225
HinfI	GANTC	9 cut(s)	58, 258, 378, 462, 833, 883, 1261, 1535, 2338
HpaII	CCGG	4 cut(s)	1102, 1989, 2049, 2300
HphI	GGTGA	9 cut(s)	398, 764, 980, 1414, 1702, 2041, 2291, 2464, 2914
Hpy166II	GTNNAC	8 cut(s)	12, 1247, 1519, 1723, 1761, 2032, 2437, 2563
Hpy188I	TCNGA	7 cut(s)	72, 322, 1383, 1540, 1862, 2371, 3075
Hpy8I	GTNNAC	8 cut(s)	12, 1247, 1519, 1723, 1761, 2032, 2437, 2563
HpyCH4III	ACNGT	6 cut(s)	572, 584, 657, 2413, 2476, 2716
HpyCH4IV	ACGT	3 cut(s)	941, 1647, 2034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	322, 987, 1863, 2405, 2519
HpyF3I	CTNAG	8 cut(s)	285, 879, 1407, 1552, 1711, 1859, 2099, 2368
HpySE526I	ACGT	3 cut(s)	941, 1647, 2034
Hsp92I	GRCGYC	1 cut(s)	718
HspAI	GCGC	6 cut(s)	407, 409, 527, 718, 1928, 2654
KasI	GGCGCC	1 cut(s)	717
Ksp22I	TGATCA	3 cut(s)	2379, 2496, 2568
LmnI	GCTCC	2 cut(s)	322, 2585
LweI	GCATC	6 cut(s)	355, 356, 382, 555, 1853, 2284
MaeI	CTAG	8 cut(s)	135, 1527, 1635, 1751, 1851, 2205, 2840, 3029
MaeII	ACGT	3 cut(s)	941, 1647, 2034
MaeIII	GTNAC	9 cut(s)	680, 874, 937, 1213, 1258, 1402, 1766, 2272, 2902
MfeI	CAATTG	4 cut(s)	1218, 1806, 2907, 3018
MflI	RGATCY	3 cut(s)	1343, 1548, 1975
MhlI	GDGCHC	4 cut(s)	25, 318, 1763, 2590
MlsI	TGGCCA	2 cut(s)	813, 3016
MluNI	TGGCCA	2 cut(s)	813, 3016
Mly113I	GGCGCC	1 cut(s)	718
MlyI	GAGTC	1 cut(s)	1255
MmeI	TCCRAC	3 cut(s)	554, 1586, 2491
Mox20I	TGGCCA	2 cut(s)	813, 3016
Mph1103I	ATGCAT	2 cut(s)	1868, 2993
MroXI	GAANNNNTTC	2 cut(s)	887, 2855
MscI	TGGCCA	2 cut(s)	813, 3016
MseI	TTAA	6 cut(s)	252, 1500, 1659, 1971, 2537, 2817
MslI	CAYNNNNRTG	3 cut(s)	1610, 2798, 2900
Msp20I	TGGCCA	2 cut(s)	813, 3016
MspA1I	CMGCKG	2 cut(s)	791, 1208
MspI	CCGG	4 cut(s)	1102, 1989, 2049, 2300
MspR9I	CCNGG	2 cut(s)	1989, 2106
MunI	CAATTG	4 cut(s)	1218, 1806, 2907, 3018
Mva1269I	GAATGC	4 cut(s)	106, 1638, 1871, 2018
MvaI	CCWGG	1 cut(s)	2106
MvnI	CGCG	2 cut(s)	409, 2900
MwoI	GCNNNNNNNGC	5 cut(s)	322, 987, 1863, 2405, 2519
NarI	GGCGCC	1 cut(s)	718
NciI	CCSGG	1 cut(s)	1989
NcoI	CCATGG	2 cut(s)	1338, 2331
NheI	GCTAGC	1 cut(s)	1850
NlaIV	GGNNCC	4 cut(s)	243, 430, 719, 2684
NmuCI	GTSAC	6 cut(s)	874, 937, 1258, 1402, 2272, 2902
NsiI	ATGCAT	2 cut(s)	1868, 2993
NspI	RCATGY	3 cut(s)	934, 1026, 2119
NspV	TTCGAA	1 cut(s)	1664
OliI	CACNNNNGTG	1 cut(s)	2798
PaeI	GCATGC	1 cut(s)	934
PauI	GCGCGC	1 cut(s)	407
PceI	AGGCCT	2 cut(s)	1525, 2104
PctI	GAATGC	4 cut(s)	106, 1638, 1871, 2018
PdmI	GAANNNNTTC	2 cut(s)	887, 2855
PfeI	GAWTC	8 cut(s)	58, 258, 378, 462, 833, 883, 1535, 2338
PflMI	CCANNNNNTGG	1 cut(s)	794
PleI	GAGTC	1 cut(s)	1255
PluTI	GGCGCC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	1255
Psp124BI	GAGCTC	2 cut(s)	318, 2590
Psp6I	CCWGG	1 cut(s)	2104
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	2104
PspN4I	GGNNCC	4 cut(s)	243, 430, 719, 2684
PspPI	GGNCC	2 cut(s)	241, 1099
PsuI	RGATCY	3 cut(s)	1343, 1548, 1975
PteI	GCGCGC	1 cut(s)	407
PvuII	CAGCTG	2 cut(s)	791, 1208
RsaI	GTAC	7 cut(s)	1106, 1148, 1363, 1378, 1520, 1593, 1722
RsaNI	GTAC	7 cut(s)	1105, 1147, 1362, 1377, 1519, 1592, 1721
RseI	CAYNNNNRTG	3 cut(s)	1610, 2798, 2900
SacI	GAGCTC	2 cut(s)	318, 2590
SaqAI	TTAA	6 cut(s)	252, 1500, 1659, 1971, 2537, 2817
Sau96I	GGNCC	2 cut(s)	241, 1099
SchI	GAGTC	1 cut(s)	1255
ScrFI	CCNGG	2 cut(s)	1989, 2106
SduI	GDGCHC	4 cut(s)	25, 318, 1763, 2590
SfaNI	GCATC	6 cut(s)	355, 356, 382, 555, 1853, 2284
SfcI	CTRYAG	2 cut(s)	640, 2409
SfoI	GGCGCC	1 cut(s)	719
SfuI	TTCGAA	1 cut(s)	1664
SinI	GGWCC	2 cut(s)	241, 1099
SmiMI	CAYNNNNRTG	3 cut(s)	1610, 2798, 2900
SmlI	CTYRAG	2 cut(s)	2694, 2939
SmoI	CTYRAG	2 cut(s)	2694, 2939
SphI	GCATGC	1 cut(s)	934
SseBI	AGGCCT	2 cut(s)	1525, 2104
SsiI	CCGC	4 cut(s)	449, 1315, 1589, 2900
SspDI	GGCGCC	1 cut(s)	717
SspMI	CTAG	8 cut(s)	135, 1527, 1635, 1751, 1851, 2205, 2840, 3029
SstI	GAGCTC	2 cut(s)	318, 2590
StuI	AGGCCT	2 cut(s)	1525, 2104
StyD4I	CCNGG	2 cut(s)	1987, 2104
StyI	CCWWGG	3 cut(s)	1338, 2331, 2358
TaaI	ACNGT	6 cut(s)	572, 584, 657, 2413, 2476, 2716
TaiI	ACGT	3 cut(s)	944, 1650, 2037
TaqI	TCGA	2 cut(s)	1473, 1664
TaqII	GACCGA	2 cut(s)	229, 1955
TatI	WGTACW	4 cut(s)	1146, 1361, 1518, 1720
TfiI	GAWTC	8 cut(s)	58, 258, 378, 462, 833, 883, 1535, 2338
Tru1I	TTAA	6 cut(s)	252, 1500, 1659, 1971, 2537, 2817
Tru9I	TTAA	6 cut(s)	252, 1500, 1659, 1971, 2537, 2817
TseFI	GTSAC	6 cut(s)	874, 937, 1258, 1402, 2272, 2902
Tsp45I	GTSAC	6 cut(s)	874, 937, 1258, 1402, 2272, 2902
Van91I	CCANNNNNTGG	1 cut(s)	794
VneI	GTGCAC	1 cut(s)	1759
VpaK11BI	GGWCC	2 cut(s)	241, 1099
XapI	RAATTY	3 cut(s)	2144, 2190, 2945
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	3 cut(s)	934, 1026, 2119
XmiI	GTMKAC	2 cut(s)	1246, 2436
XmnI	GAANNNNTTC	2 cut(s)	887, 2855
XspI	CTAG	8 cut(s)	135, 1527, 1635, 1751, 1851, 2205, 2840, 3029
Zsp2I	ATGCAT	2 cut(s)	1868, 2993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.