Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

33656580 .. 33657326

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGAATTCAAGGAACAGAAGTTGCCAAGGAAAGCTCAGATATTATAATCACGGATGATAACTATGCTTCAGTGGTCAGTGTTTTGGCATGCGGAAGATGTGTTTATCACAATACGCAGAAGCTCGTCCAATTCCAGCTCACAGCAAATGTTGCTGGTCTTTTGATCAACTTTGCAGTAGCAGCTTCATCAAGGCAAGTGCCATTTACGATAGTTCGTTCAATTTGGTTGCACATGATTATGGACACACTACTAGCTCTGGCTCTTACCAAGGATAAACCCACAAAAGAACTCATGGAAAAGCCACCGGCGGGCAGAACTGAGCCCTTCATCACCAATGTCATGTGCAGGAAGCTCTTGGCTCAAGCTCTGTATCAAACAACTGTCCTCTTGATATTACAGTTCAGGGGAGAAGCAATGTTTGGTGTTAATAATAAGGTAAATGGCACCTTGATCTTTAATACTTACGTGTTTTGCCAGATATTCAATAGTTTAATGCAAGGAAGATTGAGAAGAAGGATATCTTTAGGTATTATCCACACCGACAAATTGTTCATGGGGATAATTGCAGTGGCAGTTATTCTACAGATTGTGACAGTGGAATTTCTAAGCACATTTGAAGATTTCAACCTATGGGGAGTATGTCTTGGAATTGCAGCCATTTCTTGGCCAATCGGTTGGGTTGTTAAGTGTATACCTGTGCCACAGAAACCCATTTTCCACTACCTGAAGATGAAGATGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

248

Amino Acids

27.77

Weight (kDa)

9.3

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	67 - 231	3.3e-28	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	666
AccI	GTMKAC	1 cut(s)	694
AciI	CCGC	2 cut(s)	93, 311
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	2 cut(s)	6, 602
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	311, 666
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	5 cut(s)	11, 222, 487, 620, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	7 cut(s)	36, 124, 139, 185, 257, 355, 368
AluI	AGCT	7 cut(s)	36, 124, 139, 185, 257, 355, 368
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	2 cut(s)	182, 656
ApoI	RAATTY	2 cut(s)	6, 602
AsuHPI	GGTGA	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	194, 668
BclI	TGATCA	1 cut(s)	165
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	584
BisI	GCNGC	2 cut(s)	183, 657
BlsI	GCNGC	2 cut(s)	184, 658
BmiI	GGNNCC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	27, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 666
Bse118I	RCCGGY	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	27, 270
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	311, 666
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	51, 312
BseXI	GCAGC	2 cut(s)	194, 668
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	670
BshNI	GGYRCC	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	311, 666
BsnI	GGCC	1 cut(s)	670
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	165, 453
BspACI	CCGC	2 cut(s)	93, 311
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	2 cut(s)	50, 313
BspLI	GGNNCC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	27, 270
BssMI	GATC	2 cut(s)	165, 453
BssNAI	GTATAC	1 cut(s)	695
BssT1I	CCWWGG	2 cut(s)	27, 270
Bst1107I	GTATAC	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	385, 402, 598
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	91, 313
BstDEI	CTNAG	3 cut(s)	37, 321, 608
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	168, 456
BstMBI	GATC	2 cut(s)	165, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 182
BstNSI	RCATGY	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	194, 668
BstXI	CCANNNNNNTGG	1 cut(s)	678
BstZ17I	GTATAC	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	4 cut(s)	78, 85, 576, 603
Cac8I	GCNNGC	2 cut(s)	91, 313
Cfr10I	RCCGGY	1 cut(s)	307
CviAII	CATG	5 cut(s)	90, 235, 295, 343, 556
DdeI	CTNAG	3 cut(s)	37, 321, 608
DpnI	GATC	2 cut(s)	167, 455
DpnII	GATC	2 cut(s)	165, 453
EaeI	YGGCCR	1 cut(s)	668
Eco130I	CCWWGG	2 cut(s)	27, 270
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	2 cut(s)	27, 270
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	27, 270
FaeI	CATG	5 cut(s)	93, 238, 298, 346, 559
FalI	AAGNNNNNCTT	2 cut(s)	508, 540
FatI	CATG	5 cut(s)	89, 234, 294, 342, 555
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	2 cut(s)	183, 657
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	183, 657
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	2 cut(s)	183, 657
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	5 cut(s)	93, 238, 298, 346, 559
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	695
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	1 cut(s)	695
HpyAV	CCTTC	2 cut(s)	337, 510
HpyCH4III	ACNGT	3 cut(s)	385, 402, 598
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	6 cut(s)	176, 232, 348, 499, 569, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 182
HpyF3I	CTNAG	3 cut(s)	37, 321, 608
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	5 cut(s)	93, 238, 298, 346, 559
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	165, 453
LpnPI	CCDG	9 cut(s)	141, 149, 245, 321, 334, 391, 491, 711, 740
Lsp1109I	GCAGC	2 cut(s)	194, 668
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	2 cut(s)	167, 455
MboI	GATC	2 cut(s)	165, 453
MboII	GAAGA	5 cut(s)	108, 516, 525, 632, 742
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	670
MluCI	AATT	7 cut(s)	6, 131, 222, 548, 564, 602, 651
MluNI	TGGCCA	1 cut(s)	670
MnlI	CCTC	1 cut(s)	398
Mox20I	TGGCCA	1 cut(s)	670
MscI	TGGCCA	1 cut(s)	670
MseI	TTAA	4 cut(s)	429, 459, 494, 687
MslI	CAYNNNNRTG	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	670
MspI	CCGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	152, 182
NdeII	GATC	2 cut(s)	165, 453
NlaIII	CATG	5 cut(s)	93, 238, 298, 346, 559
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	93
PaeI	GCATGC	1 cut(s)	93
PflMI	CCANNNNNTGG	1 cut(s)	666
PkrI	GCNGC	2 cut(s)	184, 658
Ppu21I	YACGTR	1 cut(s)	469
PsiI	TTATAA	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	429, 459, 494, 687
SatI	GCNGC	2 cut(s)	183, 657
Sau3AI	GATC	2 cut(s)	165, 453
SduI	GDGCHC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	584
SgrAI	CRCCGGYG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	7 cut(s)	6, 131, 222, 548, 564, 602, 651
SsiI	CCGC	2 cut(s)	93, 311
SspMI	CTAG	1 cut(s)	254
StyI	CCWWGG	2 cut(s)	27, 270
TaaI	ACNGT	3 cut(s)	385, 402, 598
TaiI	ACGT	1 cut(s)	471
TasI	AATT	7 cut(s)	6, 131, 222, 548, 564, 602, 651
Tru1I	TTAA	4 cut(s)	429, 459, 494, 687
Tru9I	TTAA	4 cut(s)	429, 459, 494, 687
TscAI	CASTG	4 cut(s)	78, 85, 576, 603
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	2 cut(s)	182, 656
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	177, 319, 544
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	4 cut(s)	78, 85, 576, 603
Van91I	CCANNNNNTGG	1 cut(s)	666
XapI	RAATTY	2 cut(s)	6, 602
XceI	RCATGY	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	694
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.