Rmu_sc0000533.1_g000070

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000533.1
Physical Location & Seq
Forward (+)
238791 .. 240209
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000533.1_g000070.1.cds

Sequence Viewer

Length: 1419 bp
atggatatggagaaagtaatgaagagttgtagcattctccatgttgaggcctttgattcgcagaatatgcgaagtggggtttcaatgaagaggaacgcagacaacacagttcatgtacattggaaaggagctgcagagatcaaactggaaatgtgttcaagttactacaatccctctggactcgttatagatatgggtgacagtgaaaaaaggagttttgaggagattattcaaggtatggcagctagcagactccggtgtattgcgtttgcacataaagaagttccagcagatcaaaaccatagaactatgctaaaagaagatggattgaccttggtgggacttgtaggtcttaaagatccatgccgtccagaagcaaagaaagcagttgaagattgtcaatatgcaggggtgatggtcaaaatgattacaggcgacaatattttcactgctaaagcgatagccacagaatgtgggatactcaagtccagtgatgacatcttcagtggggcagtgataaacggtgtggaatttcaaagctacaccgacttggagagaatgttgaagctggacaatatctgtgtaatggcgaggtcttctgctgctgataagcttctaatggtgcgatgcttgaagcagaaaggtcatgtagttgcagtgactggtcatggcgctactgatgtcccagcattggaagaagctgatataggactatctatgggaattcaaggaacagaagttgccaaagaaagctcagatattataatcacggatgataactttgcttcagtggtcagtgttttggcatgcggaagatgtgtttatcacaatacgcagaagctcgtccaattccagctcacatcaaatgttgctggtcttttgatcaactttgcagtagcggcttcatcaaggcaagtgccatttacgatagttcgttcaatttggttgaacatgattatggacacactactagctctggctcttaccaaggacaaacccacaaaagaactcatggaaaagccaccggtgggcagaactgagcccttcatcaccaatgtcatgtgcaggaacctcttggctcaagctctgtaccaaacaactgtcctcttgatattacagttcaggggagaagcaatgtttggtgttaatgataaggtaaatggcaccttgatctttaatacttttgtgttttgccagatgttcaatgagtttaacgccaggaagcttgtgaagaaggatatctttaggaatatccacaccgacaaattgttcatggggataattgcagtggcagttattctacagattgtgacagtggaatttctaagcaaatttgaagatatagaggttgaactacagactatggggagtatgtcttggaattgcagccatttcttggccaatcggttgggctgttaa

Protein Analysis

472

Amino Acids

52.23

Weight (kDa)

6.24

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 764
AasI GACNNNNNNGTC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 1163
AccB7I CCANNNNNTGG 1 cut(s) 1396
AciI CCGC 2 cut(s) 810, 899
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 1398
AcsI RAATTY 4 cut(s) 530, 723, 1319, 1331
AcuI CTGAAG 2 cut(s) 487, 771
AfaI GTAC 2 cut(s) 117, 1091
AfiI CCNNNNNNNGG 4 cut(s) 46, 691, 1028, 1396
AgeI ACCGGT 1 cut(s) 1024
AjnI CCWGG 1 cut(s) 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 1122, 1154
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 2 cut(s) 48, 1398
ApeKI GCWGC 4 cut(s) 131, 242, 602, 1386
ApoI RAATTY 4 cut(s) 530, 723, 1319, 1331
AsiGI ACCGGT 1 cut(s) 1024
AspLEI GCGC 1 cut(s) 674
AsuHPI GGTGA 3 cut(s) 209, 424, 1042
AsuNHI GCTAGC 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 470, 503
BalI TGGCCA 1 cut(s) 1400
BanI GGYRCC 1 cut(s) 1163
BanII GRGCYC 1 cut(s) 1044
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 4 cut(s) 118, 254, 589, 1398
BccI CCATC 2 cut(s) 317, 409
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 1219
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 1 cut(s) 882
BfaI CTAG 2 cut(s) 246, 971
BfmI CTRYAG 3 cut(s) 132, 1301, 1355
BfoI RGCGCY 1 cut(s) 675
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 5 cut(s) 132, 243, 603, 900, 1387
BlsI GCNGC 5 cut(s) 133, 244, 604, 901, 1388
Bme1390I CCNGG 1 cut(s) 1219
BmiI GGNNCC 2 cut(s) 1070, 1165
BmrFI CCNGG 1 cut(s) 1219
BmsI GCATC 1 cut(s) 617
BmtI GCTAGC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 588
BpuEI CTTGAG 2 cut(s) 467, 1065
BsaJI CCNNGG 2 cut(s) 333, 987
BsaWI WCCGGW 2 cut(s) 255, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 691, 1028, 1396
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 3 cut(s) 150, 489, 667
Bse3DI GCAATG 1 cut(s) 1140
BseBI CCWGG 1 cut(s) 1219
BseDI CCNNGG 2 cut(s) 333, 987
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 4 cut(s) 46, 691, 1028, 1396
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 2 cut(s) 768, 1029
BseNI ACTGG 3 cut(s) 150, 489, 667
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 4 cut(s) 118, 254, 589, 1398
BseYI CCCAGC 1 cut(s) 685
BsgI GTGCAG 1 cut(s) 1084
BshFI GGCC 2 cut(s) 50, 1400
BshNI GGYRCC 1 cut(s) 1163
BshTI ACCGGT 1 cut(s) 1024
BsiSI CCGG 2 cut(s) 256, 1025
BslFI GGGAC 2 cut(s) 354, 668
BslI CCNNNNNNNGG 4 cut(s) 46, 691, 1028, 1396
BsmFI GGGAC 2 cut(s) 354, 668
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 2 cut(s) 50, 1400
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp1407I TGTACA 1 cut(s) 115
Bsp143I GATC 5 cut(s) 138, 292, 358, 882, 1170
BspACI CCGC 2 cut(s) 810, 899
BspANI GGCC 2 cut(s) 50, 1400
BspCNI CTCAG 2 cut(s) 767, 1030
BspLI GGNNCC 2 cut(s) 1070, 1165
BspMAI CTGCAG 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 1163
BsrDI GCAATG 1 cut(s) 1140
BsrFI RCCGGY 1 cut(s) 1024
BsrGI TGTACA 1 cut(s) 115
BsrI ACTGG 3 cut(s) 150, 489, 667
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 2 cut(s) 333, 987
BssMI GATC 5 cut(s) 138, 292, 358, 882, 1170
BssT1I CCWWGG 2 cut(s) 333, 987
Bst2UI CCWGG 1 cut(s) 1219
Bst4CI ACNGT 6 cut(s) 109, 203, 524, 1102, 1119, 1315
Bst6I CTCTTC 2 cut(s) 17, 83
BstAPI GCANNNNNTGC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 247, 808
BstDEI CTNAG 3 cut(s) 754, 1038, 1325
BstF5I GGATG 1 cut(s) 778
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 5 cut(s) 141, 295, 361, 885, 1173
BstMBI GATC 5 cut(s) 138, 292, 358, 882, 1170
BstMWI GCNNNNNNNGC 3 cut(s) 67, 383, 899
BstNI CCWGG 1 cut(s) 1219
BstNSI RCATGY 1 cut(s) 810
BstSCI CCNGG 1 cut(s) 1217
BstSFI CTRYAG 3 cut(s) 132, 1301, 1355
BstV1I GCAGC 4 cut(s) 118, 254, 589, 1398
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 1408
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 50, 1400
BtgZI GCGATG 1 cut(s) 640
BtsCI GGATG 1 cut(s) 778
BtsI GCAGTG 4 cut(s) 447, 519, 663, 1293
Cac8I GCNNGC 2 cut(s) 247, 808
CaiI CAGNNNCTG 1 cut(s) 662
CfoI GCGC 1 cut(s) 674
Cfr10I RCCGGY 1 cut(s) 1024
Csp6I GTAC 2 cut(s) 116, 1090
CspAI ACCGGT 1 cut(s) 1024
CviQI GTAC 2 cut(s) 116, 1090
DdeI CTNAG 3 cut(s) 754, 1038, 1325
DpnI GATC 5 cut(s) 140, 294, 360, 884, 1172
DpnII GATC 5 cut(s) 138, 292, 358, 882, 1170
DrdI GACNNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 348
EaeI YGGCCR 1 cut(s) 1398
Eam1104I CTCTTC 2 cut(s) 17, 83
EarI CTCTTC 2 cut(s) 17, 83
Eco130I CCWWGG 2 cut(s) 333, 987
Eco147I AGGCCT 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 1044
Eco32I GATATC 1 cut(s) 1240
Eco57I CTGAAG 2 cut(s) 487, 771
EcoRI GAATTC 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 1217
EcoRV GATATC 1 cut(s) 1240
EcoT14I CCWWGG 2 cut(s) 333, 987
EcoT38I GRGCYC 1 cut(s) 1044
ErhI CCWWGG 2 cut(s) 333, 987
FalI AAGNNNNNCTT 2 cut(s) 1226, 1258
FaqI GGGAC 2 cut(s) 354, 668
FbaI TGATCA 1 cut(s) 882
Fnu4HI GCNGC 5 cut(s) 132, 243, 603, 900, 1387
FokI GGATG 1 cut(s) 785
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 5 cut(s) 132, 243, 603, 900, 1387
FspBI CTAG 2 cut(s) 246, 971
GlaI GCGC 1 cut(s) 673
GluI GCNGC 5 cut(s) 132, 243, 603, 900, 1387
GsaI CCCAGC 1 cut(s) 689
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 2 cut(s) 50, 1400
HapII CCGG 2 cut(s) 256, 1025
HhaI GCGC 1 cut(s) 674
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HindIII AAGCTT 2 cut(s) 611, 1223
HinfI GANTC 3 cut(s) 56, 180, 252
HpaII CCGG 2 cut(s) 256, 1025
HphI GGTGA 3 cut(s) 209, 424, 1042
Hpy188I TCNGA 1 cut(s) 757
Hpy188III TCNNGA 3 cut(s) 177, 371, 1108
HpyAV CCTTC 2 cut(s) 1054, 1228
HpyCH4III ACNGT 6 cut(s) 109, 203, 524, 1102, 1119, 1315
HpyCH4V TGCA 8 cut(s) 134, 272, 407, 656, 893, 1065, 1286, 1386
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 383, 899
HpyF3I CTNAG 3 cut(s) 754, 1038, 1325
HspAI GCGC 1 cut(s) 672
Ksp22I TGATCA 1 cut(s) 882
Kzo9I GATC 5 cut(s) 138, 292, 358, 882, 1170
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 4 cut(s) 118, 254, 589, 1398
LweI GCATC 1 cut(s) 617
MaeI CTAG 2 cut(s) 246, 971
MaeIII GTNAC 4 cut(s) 161, 197, 658, 1309
MalI GATC 5 cut(s) 140, 294, 360, 884, 1172
MboI GATC 5 cut(s) 138, 292, 358, 882, 1170
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 1044
MlsI TGGCCA 1 cut(s) 1400
MluCI AATT 9 cut(s) 530, 723, 848, 939, 1265, 1281, 1319, 1331, 1381
MluNI TGGCCA 1 cut(s) 1400
MlyI GAGTC 2 cut(s) 174, 246
MnlI CCTC 8 cut(s) 40, 84, 184, 214, 585, 1082, 1115, 1339
Mox20I TGGCCA 1 cut(s) 1400
MscI TGGCCA 1 cut(s) 1400
MseI TTAA 5 cut(s) 354, 1146, 1176, 1212, 1417
MslI CAYNNNNRTG 1 cut(s) 956
Msp20I TGGCCA 1 cut(s) 1400
MspI CCGG 2 cut(s) 256, 1025
MspR9I CCNGG 1 cut(s) 1219
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 1219
MwoI GCNNNNNNNGC 3 cut(s) 67, 383, 899
NdeII GATC 5 cut(s) 138, 292, 358, 882, 1170
NheI GCTAGC 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 1070, 1165
NmuCI GTSAC 3 cut(s) 197, 658, 1309
NspI RCATGY 1 cut(s) 810
PaeI GCATGC 1 cut(s) 810
PceI AGGCCT 1 cut(s) 50
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 1396
PinAI ACCGGT 1 cut(s) 1024
PkrI GCNGC 5 cut(s) 133, 244, 604, 901, 1388
PleI GAGTC 2 cut(s) 174, 246
PpsI GAGTC 2 cut(s) 174, 246
PsiI TTATAA 1 cut(s) 764
Psp6I CCWGG 1 cut(s) 1217
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 1 cut(s) 1217
PspN4I GGNNCC 2 cut(s) 1070, 1165
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 117, 1091
RsaNI GTAC 2 cut(s) 116, 1090
RseI CAYNNNNRTG 1 cut(s) 956
SaqAI TTAA 5 cut(s) 354, 1146, 1176, 1212, 1417
SatI GCNGC 5 cut(s) 132, 243, 603, 900, 1387
Sau3AI GATC 5 cut(s) 138, 292, 358, 882, 1170
SchI GAGTC 2 cut(s) 174, 246
ScrFI CCNGG 1 cut(s) 1219
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 1 cut(s) 617
SfcI CTRYAG 3 cut(s) 132, 1301, 1355
SgrAI CRCCGGYG 1 cut(s) 1024
SmiMI CAYNNNNRTG 1 cut(s) 956
SmlI CTYRAG 2 cut(s) 482, 1080
SmoI CTYRAG 2 cut(s) 482, 1080
SphI GCATGC 1 cut(s) 810
Sse9I AATT 9 cut(s) 530, 723, 848, 939, 1265, 1281, 1319, 1331, 1381
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 2 cut(s) 810, 899
SspI AATATT 1 cut(s) 442
SspMI CTAG 2 cut(s) 246, 971
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 1217
StyI CCWWGG 2 cut(s) 333, 987
TaaI ACNGT 6 cut(s) 109, 203, 524, 1102, 1119, 1315
TasI AATT 9 cut(s) 530, 723, 848, 939, 1265, 1281, 1319, 1331, 1381
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 902
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 5 cut(s) 354, 1146, 1176, 1212, 1417
Tru9I TTAA 5 cut(s) 354, 1146, 1176, 1212, 1417
TseFI GTSAC 3 cut(s) 197, 658, 1309
TseI GCWGC 4 cut(s) 131, 242, 602, 1386
Tsp45I GTSAC 3 cut(s) 197, 658, 1309
TspDTI ATGAA 6 cut(s) 35, 101, 101, 894, 1036, 1261
TspGWI ACGGA 1 cut(s) 785
Van91I CCANNNNNTGG 1 cut(s) 1396
XapI RAATTY 4 cut(s) 530, 723, 1319, 1331
XceI RCATGY 1 cut(s) 810
XspI CTAG 2 cut(s) 246, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.