Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

4968812 .. 4970743

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG025800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1932 bp

ATGTCCAAAGCTACCAGCCTGCATGCAAAATTTGGGAGCATTGAGTTGCTACTTGATGTTCCCAGCAGTTGTCTAGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCCTCATCATATACTGCTCTAGAGCCTTCCTGTCTTCACCACCTTCTTCTCAACCCAAAGACACCAAAGCCACAAAAGCCACATTCTTATCGCGCACAGTCTCATACTCCATTGTTAGTGTTGAATCAGTTTCGGTGCCAGCCATTAATGGCTTCAAAGTTGATCAAAAAAGCCTCACTAAGCTAGTGAAGGAGAAAAATCTCAACCAGCTTCTGGAGCTGGGAGGGGTTGAAGAAGTGGCATCAGCTCTCAAAACTGATGCAGTGCACGGAATTAATCCTGATGATGCTGACGACATTGCCTCCAGGCATGAAGCATATGGTTTCAACACCTACAAGAAACCTCCAACGCAAGGATTCCTCCATTTTGTGTGGGAAGCCTTCAAAGACCTCACAATCCTAATCCTCTTGGGATGTGCTGTGCTTTCTCTTGGTTTCGGCATTAAAGAGCATGGATTGAAAGAAGGTTGGATCGACGGTGGAAGCATTTGTCTCGCGGTCATTCTGGTCATTTCTGTTTCAGCCATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGCTGTCGAAAGTCAGCAACAATCTCCAGATTGAGGCTGTGAGAAACGGAAGGCGCCAACTGATTTCAATTTTCGAAATTGTGGTGGGTGATGTCATCTGCTTGAAAATTGGAGATCAAGTTCCAGCTGATGGATTACTTCTAGAAGGCCACTCTTTATCAGTAGACGAATCAAGCATGACGGGGGAGAGCGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATAGCTGATGGTTATGGTCGCATGCTTGTCACATCAGTCGGGATGAACACGAATTGGGGTGAAATGATGAGCCAAATTAGCCAAGACACCAGTGAAAAGACACCCCTGCAAGCACGTCTAGACAAGCTAACTTCTTCGATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTGGTTCTTGTAGTCATGTTGGTCAGATACTTCACAGGGAACACCGAGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACCAAAACTGATGACATAATAAATGCTGTCATTGGGATTGTAGCAGCAGCAGTTACAATTGTTGTGGTAGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACTGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTAACTAAGTTTTGGTCGGGGAAAGAATCTGTAAAAGAAGAAGCTTATTCAGCTATTTCTCCTTACATTCTCAACTTGATCCAAGAAGGGGTTTCTCTCAACACCACAGGTAGTGTGTACAGGCCTAGCTTGGATTCCGAAATTGAGATCTCAGGCAGTCCAACTGAAAAGGCTATTCTTTCATGGGCTGTACAGGGGTCGAAGATGGATATGGAGAAAGTGGTGAAGAGTTGTAGCATTCTCCACGTTGAAGCCTTTAATTCGAAGAAGAAACAAAGCGGAGTTCTGGTGAAGAGAAAGGTAGATAACTCAATCCATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGCAATGTGCAAAAGCTACTACAACGCCACTGGAGTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGTCTCAGATGCATAGCATTTGCACACAAACAAGTTCCAGCAGAGGAGCAACTAAACGCAGACCAGAAGTTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

643

Amino Acids

70.06

Weight (kDa)

7.18

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	109 - 178	1.2e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	234 - 329	5.9e-21	P-type ATPase actuator domain
Cation_ATPase	PF13246	492 - 635	1.4e-21	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	241, 717
AccB7I	CCANNNNNTGG	2 cut(s)	319, 794
AccI	GTMKAC	2 cut(s)	828, 1246
AccII	CGCG	2 cut(s)	199, 602
AccIII	TCCGGA	1 cut(s)	1314
AciI	CCGC	2 cut(s)	602, 1680
AclWI	GGATC	3 cut(s)	584, 1351, 1474
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	718
AfaI	GTAC	6 cut(s)	1148, 1363, 1378, 1520, 1593, 1722
AfiI	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1399, 1489
AhdI	GACNNNNNGTC	1 cut(s)	667
AjiI	CACGTC	1 cut(s)	1025
AjnI	CCWGG	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	4 cut(s)	211, 602, 1328, 1862
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	584, 1351, 1474
AlwNI	CAGNNNCTG	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	1314
AoxI	GGCC	2 cut(s)	811, 1523
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	5 cut(s)	1155, 1205, 1208, 1736, 1847
ApoI	RAATTY	1 cut(s)	29
AseI	ATTAAT	2 cut(s)	252, 381
Asp700I	GAANNNNTTC	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	201, 720
AspS9I	GGNCC	1 cut(s)	1312
AsuHPI	GGTGA	5 cut(s)	135, 764, 980, 1636, 1702
AsuII	TTCGAA	2 cut(s)	738, 1664
AsuNHI	GCTAGC	1 cut(s)	1850
AvaII	GGWCC	1 cut(s)	1312
BaeGI	GKGCMC	1 cut(s)	375
BanI	GGYRCC	2 cut(s)	241, 717
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	5 cut(s)	1167, 1217, 1220, 1748, 1859
BccI	CCATC	4 cut(s)	788, 911, 1288, 1600
BcgI	CGANNNNNNTGC	2 cut(s)	580, 614
BciT130I	CCWGG	1 cut(s)	412
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	4 cut(s)	211, 602, 1328, 1862
BfaI	CTAG	8 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 1851
BfmI	CTRYAG	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	721
BglII	AGATCT	1 cut(s)	1548
BisI	GCNGC	5 cut(s)	1156, 1206, 1209, 1737, 1848
BlsI	GCNGC	5 cut(s)	1157, 1207, 1210, 1738, 1849
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	1312
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmgBI	CACGTC	1 cut(s)	1025
BmgT120I	GGNCC	1 cut(s)	1312
BmiI	GGNNCC	2 cut(s)	243, 719
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	4 cut(s)	355, 356, 382, 1853
BmtI	GCTAGC	1 cut(s)	1854
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	4 cut(s)	341, 394, 674, 1803
Bpu14I	TTCGAA	2 cut(s)	738, 1664
BsaHI	GRCGYC	1 cut(s)	718
BsaI	GGTCTC	1 cut(s)	1328
BsaJI	CCNNGG	2 cut(s)	1122, 1338
BsaWI	WCCGGW	1 cut(s)	1314
BsaXI	ACNNNNNCTCC	6 cut(s)	392, 422, 768, 798, 1674, 1704
Bsc4I	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1399, 1489
Bse1I	ACTGG	3 cut(s)	999, 1730, 1786
Bse3DI	GCAATG	3 cut(s)	402, 1314, 1761
BseAI	TCCGGA	1 cut(s)	1314
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	2 cut(s)	1122, 1338
BseGI	GGATG	4 cut(s)	524, 957, 1132, 1807
BseLI	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1399, 1489
BseMI	GCAATG	3 cut(s)	402, 1314, 1761
BseMII	CTCAG	3 cut(s)	870, 1566, 1873
BseNI	ACTGG	3 cut(s)	999, 1730, 1786
BseRI	GAGGAG	1 cut(s)	1913
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	5 cut(s)	1167, 1217, 1220, 1748, 1859
BseYI	CCCAGC	2 cut(s)	62, 325
Bsh1236I	CGCG	2 cut(s)	199, 602
BshFI	GGCC	2 cut(s)	813, 1525
BshNI	GGYRCC	2 cut(s)	241, 717
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	1315
BslFI	GGGAC	1 cut(s)	916
BslI	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1399, 1489
BsmAI	GTCTC	4 cut(s)	211, 602, 1328, 1862
BsmFI	GGGAC	1 cut(s)	916
BsmI	GAATGC	2 cut(s)	97, 1638
BsnI	GGCC	2 cut(s)	813, 1525
Bso31I	GGTCTC	1 cut(s)	1328
Bsp119I	TTCGAA	2 cut(s)	738, 1664
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	1314
Bsp1407I	TGTACA	3 cut(s)	1518, 1591, 1720
Bsp143I	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
Bsp19I	CCATGG	1 cut(s)	1338
BspACI	CCGC	2 cut(s)	602, 1680
BspANI	GGCC	2 cut(s)	813, 1525
BspCNI	CTCAG	3 cut(s)	871, 1565, 1872
BspEI	TCCGGA	1 cut(s)	1314
BspFNI	CGCG	2 cut(s)	199, 602
BspLI	GGNNCC	2 cut(s)	243, 719
BspOI	GCTAGC	1 cut(s)	1854
BspPI	GGATC	3 cut(s)	584, 1351, 1474
BspT104I	TTCGAA	2 cut(s)	738, 1664
BspT107I	GGYRCC	2 cut(s)	241, 717
BspTNI	GGTCTC	1 cut(s)	1328
BsrDI	GCAATG	3 cut(s)	402, 1314, 1761
BsrGI	TGTACA	3 cut(s)	1518, 1591, 1720
BsrI	ACTGG	3 cut(s)	999, 1730, 1786
BssECI	CCNNGG	2 cut(s)	1122, 1338
BssMI	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
BssNI	GRCGYC	1 cut(s)	718
BssT1I	CCWWGG	1 cut(s)	1338
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	3 cut(s)	205, 584, 657
Bst6I	CTCTTC	3 cut(s)	1280, 1622, 1688
BstACI	GRCGYC	1 cut(s)	718
BstAUI	TGTACA	3 cut(s)	1518, 1591, 1720
BstBI	TTCGAA	2 cut(s)	738, 1664
BstC8I	GCNNGC	6 cut(s)	20, 24, 246, 932, 1020, 1852
BstDEI	CTNAG	5 cut(s)	285, 879, 1407, 1552, 1859
BstDSI	CCRYGG	1 cut(s)	1338
BstF5I	GGATG	4 cut(s)	524, 957, 1132, 1807
BstFNI	CGCG	2 cut(s)	199, 602
BstH2I	RGCGCY	1 cut(s)	721
BstHHI	GCGC	2 cut(s)	201, 720
BstKTI	GATC	6 cut(s)	271, 579, 781, 1346, 1482, 1551
BstMAI	GTCTC	4 cut(s)	211, 602, 1328, 1862
BstMBI	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 322, 987, 1451
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	2 cut(s)	26, 934
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	2 cut(s)	199, 602
BstV1I	GCAGC	5 cut(s)	1167, 1217, 1220, 1748, 1859
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	2 cut(s)	1343, 1548
BstYI	RGATCY	2 cut(s)	1343, 1548
BsuRI	GGCC	2 cut(s)	813, 1525
BtgI	CCRYGG	1 cut(s)	1338
BtrI	CACGTC	1 cut(s)	1025
BtsCI	GGATG	4 cut(s)	524, 957, 1132, 1807
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	5 cut(s)	375, 876, 1006, 1723, 1779
Cac8I	GCNNGC	6 cut(s)	20, 24, 246, 932, 1020, 1852
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	2 cut(s)	201, 720
Cfr13I	GGNCC	1 cut(s)	1312
Csp6I	GTAC	6 cut(s)	1147, 1362, 1377, 1519, 1592, 1721
CspCI	CAANNNNNGTGG	4 cut(s)	1206, 1241, 1768, 1803
CviQI	GTAC	6 cut(s)	1147, 1362, 1377, 1519, 1592, 1721
DdeI	CTNAG	5 cut(s)	285, 879, 1407, 1552, 1859
DinI	GGCGCC	1 cut(s)	719
DpnI	GATC	6 cut(s)	270, 578, 780, 1345, 1481, 1550
DpnII	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
DriI	GACNNNNNGTC	1 cut(s)	667
Eam1104I	CTCTTC	3 cut(s)	1280, 1622, 1688
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EarI	CTCTTC	3 cut(s)	1280, 1622, 1688
Eco130I	CCWWGG	1 cut(s)	1338
Eco147I	AGGCCT	1 cut(s)	1525
Eco31I	GGTCTC	1 cut(s)	1328
Eco47I	GGWCC	1 cut(s)	1312
EcoRII	CCWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	1338
EcoT22I	ATGCAT	1 cut(s)	1868
EgeI	GGCGCC	1 cut(s)	719
EheI	GGCGCC	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	1338
FaqI	GGGAC	1 cut(s)	916
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	2 cut(s)	828, 1246
Fnu4HI	GCNGC	5 cut(s)	1156, 1206, 1209, 1737, 1848
FokI	GGATG	4 cut(s)	531, 964, 1139, 1814
Fsp4HI	GCNGC	5 cut(s)	1156, 1206, 1209, 1737, 1848
FspBI	CTAG	8 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 1851
GlaI	GCGC	2 cut(s)	200, 719
GluI	GCNGC	5 cut(s)	1156, 1206, 1209, 1737, 1848
GsaI	CCCAGC	2 cut(s)	66, 329
GsuI	CTGGAG	4 cut(s)	341, 394, 674, 1803
HaeII	RGCGCY	1 cut(s)	721
HaeIII	GGCC	2 cut(s)	813, 1525
HapII	CCGG	1 cut(s)	1315
HhaI	GCGC	2 cut(s)	201, 720
Hin1I	GRCGYC	1 cut(s)	718
Hin6I	GCGC	2 cut(s)	199, 718
HinP1I	GCGC	2 cut(s)	199, 718
HindIII	AAGCTT	1 cut(s)	1443
HinfI	GANTC	7 cut(s)	230, 462, 833, 883, 1261, 1427, 1535
HpaII	CCGG	1 cut(s)	1315
HphI	GGTGA	5 cut(s)	135, 764, 980, 1636, 1702
Hpy166II	GTNNAC	5 cut(s)	373, 829, 1247, 1519, 1723
Hpy188I	TCNGA	4 cut(s)	1103, 1383, 1540, 1862
Hpy188III	TCNNGA	9 cut(s)	126, 320, 386, 691, 806, 949, 1028, 1238, 1315
Hpy8I	GTNNAC	5 cut(s)	373, 829, 1247, 1519, 1723
Hpy99I	CGWCG	1 cut(s)	584
HpyCH4III	ACNGT	3 cut(s)	205, 584, 657
HpyCH4IV	ACGT	2 cut(s)	1024, 1647
HpyCH4V	TGCA	9 cut(s)	22, 26, 368, 373, 1018, 1307, 1761, 1866, 1877
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 322, 987, 1451
HpyF3I	CTNAG	5 cut(s)	285, 879, 1407, 1552, 1859
HpySE526I	ACGT	2 cut(s)	1024, 1647
Hsp92I	GRCGYC	1 cut(s)	718
HspAI	GCGC	2 cut(s)	199, 718
KasI	GGCGCC	1 cut(s)	717
Kpn2I	TCCGGA	1 cut(s)	1314
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
LmnI	GCTCC	4 cut(s)	36, 322, 1733, 1900
Lsp1109I	GCAGC	5 cut(s)	1167, 1217, 1220, 1748, 1859
LweI	GCATC	4 cut(s)	355, 356, 382, 1853
MaeI	CTAG	8 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 1851
MaeII	ACGT	2 cut(s)	1024, 1647
MaeIII	GTNAC	5 cut(s)	874, 937, 1213, 1258, 1402
MalI	GATC	6 cut(s)	270, 578, 780, 1345, 1481, 1550
MboI	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
MfeI	CAATTG	1 cut(s)	1218
MflI	RGATCY	2 cut(s)	1343, 1548
MhlI	GDGCHC	1 cut(s)	375
Mly113I	GGCGCC	1 cut(s)	718
MlyI	GAGTC	1 cut(s)	1255
MmeI	TCCRAC	3 cut(s)	476, 554, 1586
Mph1103I	ATGCAT	1 cut(s)	1868
MroI	TCCGGA	1 cut(s)	1314
MroXI	GAANNNNTTC	1 cut(s)	887
MseI	TTAA	5 cut(s)	252, 381, 549, 1659, 1791
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	1315
MspR9I	CCNGG	1 cut(s)	412
MunI	CAATTG	1 cut(s)	1218
Mva1269I	GAATGC	2 cut(s)	97, 1638
MvaI	CCWGG	1 cut(s)	412
MvnI	CGCG	2 cut(s)	199, 602
MwoI	GCNNNNNNNGC	4 cut(s)	182, 322, 987, 1451
NarI	GGCGCC	1 cut(s)	718
NcoI	CCATGG	1 cut(s)	1338
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
NheI	GCTAGC	1 cut(s)	1850
NlaIV	GGNNCC	2 cut(s)	243, 719
NmuCI	GTSAC	3 cut(s)	874, 937, 1258
NsiI	ATGCAT	1 cut(s)	1868
NspI	RCATGY	2 cut(s)	26, 934
NspV	TTCGAA	2 cut(s)	738, 1664
PaeI	GCATGC	2 cut(s)	26, 934
PceI	AGGCCT	1 cut(s)	1525
PctI	GAATGC	2 cut(s)	97, 1638
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	6 cut(s)	230, 462, 833, 883, 1427, 1535
PflMI	CCANNNNNTGG	2 cut(s)	319, 794
PkrI	GCNGC	5 cut(s)	1157, 1207, 1210, 1738, 1849
PleI	GAGTC	1 cut(s)	1255
PluTI	GGCGCC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	1255
PshBI	ATTAAT	2 cut(s)	252, 381
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	2 cut(s)	62, 325
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	243, 719
PspPI	GGNCC	1 cut(s)	1312
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	1343, 1548
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	6 cut(s)	1148, 1363, 1378, 1520, 1593, 1722
RsaNI	GTAC	6 cut(s)	1147, 1362, 1377, 1519, 1592, 1721
SaqAI	TTAA	5 cut(s)	252, 381, 549, 1659, 1791
SatI	GCNGC	5 cut(s)	1156, 1206, 1209, 1737, 1848
Sau3AI	GATC	6 cut(s)	268, 576, 778, 1343, 1479, 1548
Sau96I	GGNCC	1 cut(s)	1312
SchI	GAGTC	1 cut(s)	1255
ScrFI	CCNGG	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	4 cut(s)	355, 356, 382, 1853
SfcI	CTRYAG	1 cut(s)	640
SfoI	GGCGCC	1 cut(s)	719
SfuI	TTCGAA	2 cut(s)	738, 1664
SinI	GGWCC	1 cut(s)	1312
SphI	GCATGC	2 cut(s)	26, 934
SseBI	AGGCCT	1 cut(s)	1525
SsiI	CCGC	2 cut(s)	602, 1680
SspDI	GGCGCC	1 cut(s)	717
SspMI	CTAG	8 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 1851
StuI	AGGCCT	1 cut(s)	1525
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	1338
TaaI	ACNGT	3 cut(s)	205, 584, 657
TaiI	ACGT	2 cut(s)	1027, 1650
TaqI	TCGA	6 cut(s)	579, 671, 738, 1046, 1601, 1664
TatI	WGTACW	5 cut(s)	1146, 1361, 1518, 1591, 1720
TfiI	GAWTC	6 cut(s)	230, 462, 833, 883, 1427, 1535
Tru1I	TTAA	5 cut(s)	252, 381, 549, 1659, 1791
Tru9I	TTAA	5 cut(s)	252, 381, 549, 1659, 1791
TscAI	CASTG	5 cut(s)	375, 883, 1006, 1730, 1786
TseFI	GTSAC	3 cut(s)	874, 937, 1258
TseI	GCWGC	5 cut(s)	1155, 1205, 1208, 1736, 1847
Tsp45I	GTSAC	3 cut(s)	874, 937, 1258
TspDTI	ATGAA	7 cut(s)	432, 968, 1298, 1403, 1412, 1572, 1824
TspGWI	ACGGA	2 cut(s)	390, 726
TspRI	CASTG	5 cut(s)	375, 883, 1006, 1730, 1786
Van91I	CCANNNNNTGG	2 cut(s)	319, 794
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	1312
VspI	ATTAAT	2 cut(s)	252, 381
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	3 cut(s)	125, 805, 1027
XceI	RCATGY	2 cut(s)	26, 934
XmiI	GTMKAC	2 cut(s)	828, 1246
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	8 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 1851
Zsp2I	ATGCAT	1 cut(s)	1868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.