Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

5064641 .. 5067976

Gene Structure 3336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG026000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTATCGACTCCTTTGCTAATTGAGTCATGGAGGCTGTGCAGCGTTGCCAATGCCGCCGCATTGGGTTTCGTATCGAAGCAAATCAGAGATGTAGGATACCTTCTTTTCTTTGCTTGCACCATTGGTAACTTTAGTAAGATTAGACAGTTTCACAGATCGTCCAAAGTCAACGACACGTTGCAAATTGAAGCTGTGAGAGGTAGCGAGCAGCACAATCAAAATGGAGTTACAATTGTTGTGGTAGAAATTCCAGAAGGCAGGCGGATAATACAGTCCAAGTACATTTTAAAAGGAGCTGCAGAGATGATACTAGCAATGTGTACAAGTTACTACGATGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAATGAACTTTGAGCAGATTAGTCAAGGTATGACAGCAAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTCCAGCAGATGAGGAAGTTGAGGTAGACCAGAAAGTTGTGCTAAAGGAAGATGGCTTGACCCTATTGGGACTTGTAGGTCTTAAAGTTCATGTTGGTCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

185

Amino Acids

20.51

Weight (kDa)

5.84

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	80 - 178	4.1e-14	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	3 cut(s)	57, 60, 265
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	2 cut(s)	284, 325
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	2 cut(s)	194, 299
AluI	AGCT	2 cut(s)	194, 299
ApeKI	GCWGC	4 cut(s)	42, 211, 299, 417
ApoI	RAATTY	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	87, 119
BbvI	GCAGC	4 cut(s)	54, 223, 286, 429
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	3 cut(s)	32, 418, 452
BciVI	GTATCC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	6 cut(s)	43, 57, 60, 212, 300, 418
BlsI	GCNGC	6 cut(s)	44, 58, 61, 213, 301, 419
BmsI	GCATC	3 cut(s)	328, 416, 438
Bse3DI	GCAATG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	436
BseXI	GCAGC	4 cut(s)	54, 223, 286, 429
BsgI	GTGCAG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	534
BsmFI	GGGAC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	434
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	158
BspACI	CCGC	3 cut(s)	57, 60, 265
BspCNI	CTCAG	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	323
BssMI	GATC	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	150, 276
BstAUI	TGTACA	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	118, 209, 263, 415
BstDEI	CTNAG	1 cut(s)	422
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 426
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	54, 223, 286, 429
BsuI	GTATCC	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	415
Cac8I	GCNNGC	4 cut(s)	118, 209, 263, 415
Csp6I	GTAC	2 cut(s)	283, 324
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	2 cut(s)	30, 542
CviJI	RGCY	5 cut(s)	37, 194, 299, 420, 507
CviKI_1	RGCY	5 cut(s)	37, 194, 299, 420, 507
CviQI	GTAC	2 cut(s)	283, 324
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
DraI	TTTAAA	1 cut(s)	291
DrdI	GACNNNNNNGTC	1 cut(s)	528
DseDI	GACNNNNNNGTC	1 cut(s)	528
EciI	GGCGGA	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	431
FaeI	CATG	2 cut(s)	33, 545
FaiI	YATR	5 cut(s)	31, 362, 407, 444, 543
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	2 cut(s)	29, 541
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	6 cut(s)	43, 57, 60, 212, 300, 418
Fsp4HI	GCNGC	6 cut(s)	43, 57, 60, 212, 300, 418
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	6 cut(s)	43, 57, 60, 212, 300, 418
Hin1II	CATG	2 cut(s)	33, 545
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	10, 26
Hpy166II	GTNNAC	3 cut(s)	172, 324, 478
Hpy188I	TCNGA	2 cut(s)	89, 425
Hpy188III	TCNNGA	3 cut(s)	254, 345, 551
Hpy8I	GTNNAC	3 cut(s)	172, 324, 478
HpyAV	CCTTC	2 cut(s)	113, 251
HpyCH4III	ACNGT	2 cut(s)	150, 276
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	42, 120, 184, 302, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 426
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	33, 545
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	247, 267, 330, 468, 494, 536
Lsp1109I	GCAGC	4 cut(s)	54, 223, 286, 429
LweI	GCATC	3 cut(s)	328, 416, 438
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	128, 229, 329
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	1 cut(s)	512
MfeI	CAATTG	1 cut(s)	234
MluCI	AATT	5 cut(s)	21, 186, 234, 249, 348
MlyI	GAGTC	2 cut(s)	4, 35
MnlI	CCTC	6 cut(s)	27, 194, 352, 431, 457, 466
Mph1103I	ATGCAT	1 cut(s)	431
MseI	TTAA	3 cut(s)	290, 354, 534
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	56, 426
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	33, 545
NsiI	ATGCAT	1 cut(s)	431
PctI	GAATGC	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	44, 58, 61, 213, 301, 419
PleI	GAGTC	2 cut(s)	4, 34
PpsI	GAGTC	2 cut(s)	4, 34
PstI	CTGCAG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	284, 325
RsaNI	GTAC	2 cut(s)	283, 324
SaqAI	TTAA	3 cut(s)	290, 354, 534
SatI	GCNGC	6 cut(s)	43, 57, 60, 212, 300, 418
Sau3AI	GATC	1 cut(s)	158
SchI	GAGTC	2 cut(s)	4, 35
SetI	ASST	8 cut(s)	105, 182, 196, 205, 301, 406, 477, 532
SfaNI	GCATC	3 cut(s)	328, 416, 438
SfcI	CTRYAG	1 cut(s)	300
Sse9I	AATT	5 cut(s)	21, 186, 234, 249, 348
SsiI	CCGC	3 cut(s)	57, 60, 265
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	150, 276
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	8, 77
TasI	AATT	5 cut(s)	21, 186, 234, 249, 348
TatI	WGTACW	2 cut(s)	282, 323
TauI	GCSGC	2 cut(s)	59, 62
Tru1I	TTAA	3 cut(s)	290, 354, 534
Tru9I	TTAA	3 cut(s)	290, 354, 534
TseI	GCWGC	4 cut(s)	42, 211, 299, 417
TspDTI	ATGAA	3 cut(s)	387, 395, 530
XapI	RAATTY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.