Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

27150304 .. 27153514

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1245900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATATTAGAATATCTTTGGTTTTCTGCTGAGGTAGAAATGGAAAGTCGTCGTGAAATTGGTTTGACCATTCAGAGAACCATCCAAGAAATCATTCCTCTAATCTTCCAATCTTTGCTTTGGGAACCATTTACCCATGGGGAGGGTTTGTTTTGCATTTTGAAATTGGTGGTTGTTAGATGGGGTCGATCTGTATATGCAAATATTCAGAAATTCATCCAATTCCAGCTTACAGTAAATGTAGCAGCACTAATTATAAATGTCGTCGCAGCCATTTCATCTGGTGATGTACCGCTAAATGCTGTTCAGCTTCTGTGGGTGAATCTTATCATGGATACTCTTGGAGCACTAGCATTAGCTACGGAGCCACCTACAGATCACTTGATGGACAGACCCCCTGTTGGTCGAAGAGAGCCGCTCATAACAAATATAATGTGGAGGAACTTGTTGGTTCAGGCTTTCTACCAAGTCACTGTCCTACTTGTCTTCAACTTCCGAGGAATAAGTATACTGAAGCTACATGGTCCCAATGCTAACACAGTGAAGAATACTCTGATATTCAATACTTTTGTCCTATGTCAGATTTTCAATGAATTCAATGCTCGAAAGCCTGATGAGTTCAATATATTCAAAGGGATCACCAAGAACTACCTTTTTTATAGGAATAGTGACAGTAACTCTTGTACTTCAGGTGATACTTTAATTATCATCGTCGAGTTCCTTGGGAAGTTCACTAAAACAAAACCACTTACTTGGAATCTTTGGCTAATTTCAGCTGTAATAGCTTTTATCAGTTGGCCTCTTGCTGTTCTCGGGAAGCTGATTCCGGTTCCAGAAACTCCTCTCTTCAAGTATTTTACAAGAATGATCCCTGGGCGAAGAAACAGTCCAGAGGGTAGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

302

Amino Acids

34.38

Weight (kDa)

9.3

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	97 - 275	5e-39	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	508
AciI	CCGC	2 cut(s)	293, 416
AclWI	GGATC	2 cut(s)	644, 862
AcsI	RAATTY	2 cut(s)	212, 593
AcuI	CTGAAG	2 cut(s)	533, 672
AfaI	GTAC	2 cut(s)	291, 685
AfiI	CCNNNNNNNGG	2 cut(s)	142, 401
AgsI	TTSAA	8 cut(s)	163, 490, 562, 589, 598, 622, 631, 850
AjnI	CCWGG	1 cut(s)	871
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	7 cut(s)	229, 310, 359, 517, 776, 785, 820
AluI	AGCT	7 cut(s)	229, 310, 359, 517, 776, 785, 820
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	644, 862
AlwNI	CAGNNNCTG	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	812
AoxI	GGCC	1 cut(s)	797
ApeKI	GCWGC	2 cut(s)	245, 269
ApoI	RAATTY	2 cut(s)	212, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	871, 903
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	4 cut(s)	296, 331, 631, 704
AvaI	CYCGRG	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	349
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	257, 281
BccI	CCATC	3 cut(s)	89, 174, 379
BciT130I	CCWGG	1 cut(s)	873
BciVI	GTATCC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	246, 270, 416
BlsI	GCNGC	3 cut(s)	247, 271, 417
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	4 cut(s)	126, 366, 526, 831
BmrFI	CCNGG	1 cut(s)	873
BpiI	GAAGAC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
Bpu10I	CCTNAGC	1 cut(s)	30
BsaJI	CCNNGG	5 cut(s)	136, 496, 721, 871, 872
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 401
BseBI	CCWGG	1 cut(s)	873
BseDI	CCNNGG	5 cut(s)	136, 496, 721, 871, 872
BseGI	GGATG	2 cut(s)	81, 216
BseLI	CCNNNNNNNGG	2 cut(s)	142, 401
BseMII	CTCAG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	831
BseXI	GCAGC	2 cut(s)	257, 281
BshFI	GGCC	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	812
BsiSI	CCGG	1 cut(s)	827
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	142, 401
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	799
BsoBI	CYCGRG	1 cut(s)	812
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	188, 376, 636, 867
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	2 cut(s)	293, 416
BspANI	GGCC	1 cut(s)	799
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	4 cut(s)	126, 366, 526, 831
BspPI	GGATC	2 cut(s)	644, 862
BsrBI	CCGCTC	1 cut(s)	418
BssECI	CCNNGG	5 cut(s)	136, 496, 721, 871, 872
BssMI	GATC	4 cut(s)	188, 376, 636, 867
BssNAI	GTATAC	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	136, 721
Bst1107I	GTATAC	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	5 cut(s)	235, 475, 541, 674, 887
Bst6I	CTCTTC	2 cut(s)	403, 851
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	81, 216
BstKTI	GATC	4 cut(s)	191, 379, 639, 870
BstMBI	GATC	4 cut(s)	188, 376, 636, 867
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	1 cut(s)	873
BstSCI	CCNGG	1 cut(s)	871
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	257, 281
BstV2I	GAAGAC	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	753
BstZ17I	GTATAC	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	799
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	81, 216
BtsIMutI	CAGTG	2 cut(s)	471, 546
CaiI	CAGNNNCTG	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	290, 684
CviAII	CATG	3 cut(s)	137, 331, 521
CviQI	GTAC	2 cut(s)	290, 684
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	4 cut(s)	190, 378, 638, 869
DpnII	GATC	4 cut(s)	188, 376, 636, 867
Eam1104I	CTCTTC	2 cut(s)	403, 851
EarI	CTCTTC	2 cut(s)	403, 851
Eco130I	CCWWGG	2 cut(s)	136, 721
Eco47I	GGWCC	1 cut(s)	524
Eco57I	CTGAAG	2 cut(s)	533, 672
Eco88I	CYCGRG	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	871
EcoT14I	CCWWGG	2 cut(s)	136, 721
ErhI	CCWWGG	2 cut(s)	136, 721
FaeI	CATG	3 cut(s)	140, 334, 524
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	3 cut(s)	136, 330, 520
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	246, 270, 416
FokI	GGATG	2 cut(s)	68, 203
Fsp4HI	GCNGC	3 cut(s)	246, 270, 416
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	3 cut(s)	246, 270, 416
HaeIII	GGCC	1 cut(s)	799
HapII	CCGG	1 cut(s)	827
Hin1II	CATG	3 cut(s)	140, 334, 524
HinfI	GANTC	3 cut(s)	322, 757, 823
HpaII	CCGG	1 cut(s)	827
HphI	GGTGA	4 cut(s)	296, 331, 631, 704
Hpy166II	GTNNAC	2 cut(s)	509, 732
Hpy188I	TCNGA	5 cut(s)	75, 210, 497, 555, 582
Hpy188III	TCNNGA	4 cut(s)	53, 814, 833, 890
Hpy8I	GTNNAC	2 cut(s)	509, 732
Hpy99I	CGWCG	3 cut(s)	54, 269, 716
HpyCH4III	ACNGT	5 cut(s)	235, 475, 541, 674, 887
HpyCH4V	TGCA	2 cut(s)	156, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	140, 334, 524
Kzo9I	GATC	4 cut(s)	188, 376, 636, 867
LmnI	GCTCC	2 cut(s)	344, 364
Lsp1109I	GCAGC	2 cut(s)	257, 281
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	469, 668, 674
MalI	GATC	4 cut(s)	190, 378, 638, 869
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	4 cut(s)	188, 376, 636, 867
MboII	GAAGA	6 cut(s)	97, 420, 478, 556, 838, 891
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	8 cut(s)	57, 164, 212, 221, 252, 593, 702, 768
MnlI	CCTC	8 cut(s)	25, 108, 136, 432, 491, 810, 852, 886
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	827
MspR9I	CCNGG	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	1 cut(s)	782
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	4 cut(s)	188, 376, 636, 867
NlaIII	CATG	3 cut(s)	140, 334, 524
NlaIV	GGNNCC	4 cut(s)	126, 366, 526, 831
NmuCI	GTSAC	2 cut(s)	469, 668
PasI	CCCWGGG	1 cut(s)	872
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	322, 757, 823
PkrI	GCNGC	3 cut(s)	247, 271, 417
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	871
PspGI	CCWGG	1 cut(s)	871
PspN4I	GGNNCC	4 cut(s)	126, 366, 526, 831
PspPI	GGNCC	1 cut(s)	524
PstNI	CAGNNNCTG	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	291, 685
RsaNI	GTAC	2 cut(s)	290, 684
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	3 cut(s)	246, 270, 416
Sau3AI	GATC	4 cut(s)	188, 376, 636, 867
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	524
Sse9I	AATT	8 cut(s)	57, 164, 212, 221, 252, 593, 702, 768
SsiI	CCGC	2 cut(s)	293, 416
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	871
StyI	CCWWGG	2 cut(s)	136, 721
TaaI	ACNGT	5 cut(s)	235, 475, 541, 674, 887
TaqI	TCGA	4 cut(s)	187, 406, 604, 714
TasI	AATT	8 cut(s)	57, 164, 212, 221, 252, 593, 702, 768
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	3 cut(s)	322, 757, 823
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	2 cut(s)	478, 546
TseFI	GTSAC	2 cut(s)	469, 668
TseI	GCWGC	2 cut(s)	245, 269
Tsp45I	GTSAC	2 cut(s)	469, 668
TspDTI	ATGAA	3 cut(s)	205, 267, 606
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	2 cut(s)	478, 546
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	2 cut(s)	212, 593
XmiI	GTMKAC	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.