Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

5068096 .. 5068432

Gene Structure 337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG026100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTTCAGTGGAACAGTGATAGAAGATGTTGAATTTAGCAACTACACTCCACAAGAGAAAATGGAGAAGCAAAAAGGTCATGTAGTTGCGGTGACTGGTGATGGGACCAATAATGCACCGGCATTGAAAGAAGCTGATATAGTCCTTTCTAGGGGAATTCAAGGCACAGAAGTTGCTAGAGAGAGCTCAGACATTGTGATCATGGATGACAAGTTTGCTTCAGTTGCCACAGTTTTGAGATGGAGAAGATGTGTTTACAATCAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

89

Amino Acids

9.86

Weight (kDa)

5.02

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	32, 156
AcuI	CTGAAG	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	32, 127, 161
AluBI	AGCT	2 cut(s)	134, 186
AluI	AGCT	2 cut(s)	134, 186
Alw21I	GWGCWC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	32, 156
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	103, 110
AvaII	GGWCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	2 cut(s)	95, 234
BclI	TGATCA	1 cut(s)	198
BfaI	CTAG	3 cut(s)	150, 177, 268
BglII	AGATCT	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	198, 264
BspACI	CCGC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	2 cut(s)	198, 264
Bst4CI	ACNGT	2 cut(s)	16, 232
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	201, 267
BstMBI	GATC	2 cut(s)	198, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	13, 21
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	105
CviAII	CATG	2 cut(s)	80, 202
CviJI	RGCY	2 cut(s)	134, 186
CviKI_1	RGCY	2 cut(s)	134, 186
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	2 cut(s)	200, 266
DpnII	GATC	2 cut(s)	198, 264
Ecl136II	GAGCTC	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	2 cut(s)	83, 205
FaiI	YATR	3 cut(s)	81, 140, 203
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	79, 201
FbaI	TGATCA	1 cut(s)	198
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	3 cut(s)	150, 177, 268
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	2 cut(s)	83, 205
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	103, 110
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	190, 264
Hpy8I	GTNNAC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	16, 232
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	83, 205
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	198, 264
LpnPI	CCDG	2 cut(s)	81, 132
MaeI	CTAG	3 cut(s)	150, 177, 268
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	200, 266
MboI	GATC	2 cut(s)	198, 264
MboII	GAAGA	2 cut(s)	35, 258
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	32, 156
MspI	CCGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	2 cut(s)	198, 264
NlaIII	CATG	2 cut(s)	83, 205
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	198, 264
Sau96I	GGNCC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	79, 136, 188
SgeI	CNNG	9 cut(s)	65, 92, 108, 131, 162, 173, 189, 214, 223
SinI	GGWCC	1 cut(s)	105
Sse9I	AATT	2 cut(s)	32, 156
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	3 cut(s)	150, 177, 268
SstI	GAGCTC	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	16, 232
TasI	AATT	2 cut(s)	32, 156
TscAI	CASTG	2 cut(s)	13, 21
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspRI	CASTG	2 cut(s)	13, 21
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	2 cut(s)	32, 156
XspI	CTAG	3 cut(s)	150, 177, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.