Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

34432453 .. 34433256

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0318600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATTGGCGCCATTTCTGTGTCAACTAGCATAACTGTTACTTGTTCAGTCTCCGACATTTCTCAAAAACCCAGCAAACCTCTAACTCCCTCAACTCTCAAATGGCTTGCAAAATCCGGCAAACTAGAAGAGGACATTTGCCTGATCGAAGCCTCACCCTCCAAATTGACGGCCACCGAGTCCGACATCGAGGCCTACTCCCTCCTCTTCCACACCTGTATCTCCCAAAAATCCTTAGAGCATGGCCAAAGGCTTTACCTACAATTTCTTCTCTCAAAAGACAAAGTGAACCACAACCTCGTCAACAATCCCACCTTGAAAACCAAGCTCATTACTCTCTACTCTGTCTGCGGCCGAGTTGACGACGCCCACTCTGTTTTCGTCGACGGTGAACACGCGCCTGAGGAGTCGGTGTGGGTGGCCATGGCCATTGCGTATTTGAGAAATGGCTACTTGGAGAAAGCGTTGCTCTTATATTGTGAAATGTTGTGCCGGCTAGTCTGGCCGGGGAATTTCGCATTCTTGATGGTGTTGAAGGCCTGTGCAGAGTTGTCTGAGCTTAGAGTCGGGAGAGCCGTCCATGCCCAGATTGTGAAATCCAATGAAAAGCCGGATCAAGTGGTGAATAATGCTCTTATGAGATTGTACTCAGAGCAGGGGTGCTTTGGGGATGCCTTGAAGGTGTTCGAAACAATGCCTCAACGAAATGTTGTTTCTTGGAACTCTTTGATTGCAAGTTTTGTTCAACGAGACCGAGTGTTTGAGTTGAAGGAATTGTGTCCTAAAACAATCATTTTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

267

Amino Acids

29.86

Weight (kDa)

6.99

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	398
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	6 cut(s)	171, 244, 352, 420, 426, 503
AcsI	RAATTY	1 cut(s)	511
AcyI	GRCGYC	2 cut(s)	9, 366
AfaI	GTAC	1 cut(s)	647
AgsI	TTSAA	5 cut(s)	319, 535, 679, 746, 769
AluBI	AGCT	2 cut(s)	328, 559
AluI	AGCT	2 cut(s)	328, 559
Alw26I	GTCTC	2 cut(s)	55, 744
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	8 cut(s)	171, 192, 244, 352, 420, 426, 503, 537
ApoI	RAATTY	1 cut(s)	511
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	2 cut(s)	11, 400
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	147, 401, 634
AsuII	TTCGAA	1 cut(s)	687
AxyI	CCTNAGG	1 cut(s)	402
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BalI	TGGCCA	3 cut(s)	246, 422, 428
BanI	GGYRCC	1 cut(s)	8
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	2 cut(s)	186, 560
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	55, 744
BfaI	CTAG	3 cut(s)	27, 125, 497
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
Bpu14I	TTCGAA	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	507
BsaHI	GRCGYC	2 cut(s)	9, 366
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	423, 506
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 449, 479
Bse118I	RCCGGY	1 cut(s)	492
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	423, 506
BseGI	GGATG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	393, 546, 663
BseRI	GAGGAG	2 cut(s)	194, 419
BseX3I	CGGCCG	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	8 cut(s)	173, 194, 246, 354, 422, 428, 505, 539
BshNI	GGYRCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	4 cut(s)	117, 493, 506, 611
BsmAI	GTCTC	2 cut(s)	55, 744
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	8 cut(s)	173, 194, 246, 354, 422, 428, 505, 539
Bso31I	GGTCTC	1 cut(s)	744
Bsp119I	TTCGAA	1 cut(s)	687
Bsp143I	GATC	2 cut(s)	144, 613
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	8 cut(s)	173, 194, 246, 354, 422, 428, 505, 539
BspCNI	CTCAG	3 cut(s)	394, 547, 662
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	423, 506
BssMI	GATC	2 cut(s)	144, 613
BssNI	GRCGYC	2 cut(s)	9, 366
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	37, 389
Bst6I	CTCTTC	2 cut(s)	123, 212
BstACI	GRCGYC	2 cut(s)	9, 366
BstBI	TTCGAA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	108, 494
BstDEI	CTNAG	5 cut(s)	235, 402, 555, 560, 649
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 400
BstKTI	GATC	2 cut(s)	147, 616
BstMAI	GTCTC	2 cut(s)	55, 744
BstMBI	GATC	2 cut(s)	144, 613
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 581
BstSCI	CCNGG	1 cut(s)	505
BstUI	CGCG	1 cut(s)	398
BstZI	CGGCCG	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	8 cut(s)	173, 194, 246, 354, 422, 428, 505, 539
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	108, 494
CfoI	GCGC	2 cut(s)	11, 400
Cfr10I	RCCGGY	1 cut(s)	492
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	3 cut(s)	242, 424, 581
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	5 cut(s)	235, 402, 555, 560, 649
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	2 cut(s)	146, 615
DpnII	GATC	2 cut(s)	144, 613
EaeI	YGGCCR	6 cut(s)	171, 244, 352, 420, 426, 503
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	123, 212
EarI	CTCTTC	2 cut(s)	123, 212
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	2 cut(s)	194, 539
Eco31I	GGTCTC	1 cut(s)	744
Eco52I	CGGCCG	1 cut(s)	352
Eco81I	CCTNAGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	423
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	245, 427, 584
FaiI	YATR	6 cut(s)	32, 243, 425, 475, 582, 638
FatI	CATG	3 cut(s)	241, 423, 580
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	352
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	3 cut(s)	27, 125, 497
GlaI	GCGC	2 cut(s)	10, 399
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	8 cut(s)	173, 194, 246, 354, 422, 428, 505, 539
HapII	CCGG	4 cut(s)	117, 493, 506, 611
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	11, 400
Hin1I	GRCGYC	2 cut(s)	9, 366
Hin1II	CATG	3 cut(s)	245, 427, 584
Hin6I	GCGC	2 cut(s)	9, 398
HinP1I	GCGC	2 cut(s)	9, 398
HincII	GTYRAC	4 cut(s)	24, 304, 361, 385
HindII	GTYRAC	4 cut(s)	24, 304, 361, 385
HinfI	GANTC	3 cut(s)	179, 407, 564
HpaII	CCGG	4 cut(s)	117, 493, 506, 611
HphI	GGTGA	3 cut(s)	147, 401, 634
Hpy166II	GTNNAC	6 cut(s)	24, 289, 304, 361, 385, 392
Hpy188I	TCNGA	4 cut(s)	55, 184, 556, 652
Hpy188III	TCNNGA	2 cut(s)	523, 568
Hpy8I	GTNNAC	6 cut(s)	24, 289, 304, 361, 385, 392
Hpy99I	CGWCG	3 cut(s)	368, 386, 389
HpyAV	CCTTC	3 cut(s)	529, 673, 763
HpyCH4III	ACNGT	2 cut(s)	37, 389
HpyCH4V	TGCA	3 cut(s)	110, 545, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 581
HpyF3I	CTNAG	5 cut(s)	235, 402, 555, 560, 649
Hsp92I	GRCGYC	2 cut(s)	9, 366
Hsp92II	CATG	3 cut(s)	245, 427, 584
HspAI	GCGC	2 cut(s)	9, 398
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	492
KroNI	GCCGGC	1 cut(s)	494
Kzo9I	GATC	2 cut(s)	144, 613
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	3 cut(s)	27, 125, 497
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	146, 615
MboI	GATC	2 cut(s)	144, 613
MboII	GAAGA	3 cut(s)	140, 199, 260
MlsI	TGGCCA	3 cut(s)	246, 422, 428
MluCI	AATT	4 cut(s)	164, 263, 511, 773
MluNI	TGGCCA	3 cut(s)	246, 422, 428
Mly113I	GGCGCC	1 cut(s)	9
MlyI	GAGTC	3 cut(s)	188, 416, 573
MmeI	TCCRAC	2 cut(s)	78, 207
Mox20I	TGGCCA	3 cut(s)	246, 422, 428
MroNI	GCCGGC	1 cut(s)	492
MroXI	GAANNNNTTC	1 cut(s)	683
MscI	TGGCCA	3 cut(s)	246, 422, 428
MslI	CAYNNNNRTG	2 cut(s)	17, 797
Msp20I	TGGCCA	3 cut(s)	246, 422, 428
MspI	CCGG	4 cut(s)	117, 493, 506, 611
MspR9I	CCNGG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	518
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	502, 581
NaeI	GCCGGC	1 cut(s)	494
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	1 cut(s)	507
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	2 cut(s)	144, 613
NgoMIV	GCCGGC	1 cut(s)	492
NlaIII	CATG	3 cut(s)	245, 427, 584
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	687
PceI	AGGCCT	2 cut(s)	194, 539
PcsI	WCGNNNNNNNCGW	1 cut(s)	573
PctI	GAATGC	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	683
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	3 cut(s)	187, 415, 572
PluTI	GGCGCC	1 cut(s)	12
PpsI	GAGTC	3 cut(s)	187, 415, 572
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	2 cut(s)	17, 797
SalI	GTCGAC	1 cut(s)	383
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	2 cut(s)	144, 613
SchI	GAGTC	3 cut(s)	188, 416, 573
ScrFI	CCNGG	1 cut(s)	507
SetI	ASST	8 cut(s)	82, 218, 261, 300, 317, 330, 561, 684
SfaNI	GCATC	1 cut(s)	661
SfoI	GGCGCC	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	687
SgrDI	CGTCGACG	1 cut(s)	383
SmiMI	CAYNNNNRTG	2 cut(s)	17, 797
Sse9I	AATT	4 cut(s)	164, 263, 511, 773
SseBI	AGGCCT	2 cut(s)	194, 539
SsiI	CCGC	1 cut(s)	351
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	3 cut(s)	27, 125, 497
StuI	AGGCCT	2 cut(s)	194, 539
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	37, 389
TaqI	TCGA	4 cut(s)	147, 189, 384, 687
TaqII	GACCGA	1 cut(s)	768
TasI	AATT	4 cut(s)	164, 263, 511, 773
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	618
XapI	RAATTY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	3 cut(s)	27, 125, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.