Rh4CG025300

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
4926573 .. 4927592
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG025300.1

Sequence Viewer

Length: 1020 bp
ATGATACTAGCAATGTGCACAAGTTACTACAATGGGTCTGGACTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGCCTCAGATGCATAGCATTTGCACATAAACAAGTTCCAGCAGAAGAGCAACTAAATGCAGACCAGAAAGTTTTGCTAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGACCTTAAAGATCCATGTCGTTCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTTGGAGCAGTCATAGAAGCTGTTGAATTCCACAACTACACGCCAGAAGAGAGATTGAAGAAAGTTGAGAAAAATTCAGTGATGGCAAGATCTTCTCCGTTTGATAAGCTTCTAATGGTGCAGTGCTTGAAACAGAAGGGTCATGTAGTTGCAGTGACCAGTGATGGCCCCAATGATGCACCAGCATTGAAAGAAGCTAATATAGGACTCTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCCTGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGCTGTGGAGAAGATGTGTGTACAATAATATCCAGAAGTTCATACAATTCCAACTCACCATCAATGTTGCAGCTATTGTGATCAACTTTGTTGTGGTAGTTTCAGAAGGTCAAGTCCCATTAACAGAAGTTAAGTTATTGTGGGTCACCTTGATCATCGACACACTTGGACCTCTCTCTTGCCACAGAAAAACCCACAACAGAACTTATGGAGAAGCCACCAGTAGGAAGGACGGCACCTCTCATCACAAACATCATGTGGAGGAATCTCTTGCCTCAAGCACTGCACCAAATAAAAGTCCTCTTGATCTTACAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGA

Protein Analysis

339

Amino Acids

37.28

Weight (kDa)

6.37

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 1 - 82 4.3e-12 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 50 - 192 2.3e-11 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 908
AciI CCGC 1 cut(s) 324
AclWI GGATC 2 cut(s) 227, 631
AcsI RAATTY 2 cut(s) 401, 448
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 1 cut(s) 695
AfiI CCNNNNNNNGG 1 cut(s) 897
AgsI TTSAA 7 cut(s) 95, 266, 401, 433, 505, 565, 599
AjnI CCWGG 2 cut(s) 361, 639
AluBI AGCT 6 cut(s) 107, 395, 484, 572, 624, 746
AluI AGCT 6 cut(s) 107, 395, 484, 572, 624, 746
Alw21I GWGCWC 2 cut(s) 20, 626
Alw26I GTCTC 1 cut(s) 303
Alw44I GTGCAC 1 cut(s) 16
AlwI GGATC 2 cut(s) 227, 631
AoxI GGCC 2 cut(s) 359, 541
ApaLI GTGCAC 1 cut(s) 16
ApeKI GCWGC 3 cut(s) 104, 111, 743
ApoI RAATTY 2 cut(s) 401, 448
AspS9I GGNCC 3 cut(s) 223, 542, 842
AsuHPI GGTGA 4 cut(s) 298, 313, 721, 811
AsuNHI GCTAGC 1 cut(s) 107
AvaII GGWCC 2 cut(s) 223, 842
BaeGI GKGCMC 1 cut(s) 20
BanI GGYRCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 626
Bbv12I GWGCWC 2 cut(s) 20, 626
BbvI GCAGC 3 cut(s) 116, 123, 755
BccI CCATC 4 cut(s) 191, 451, 533, 740
BceAI ACGGC 1 cut(s) 922
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BciT130I CCWGG 2 cut(s) 363, 641
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 2 cut(s) 753, 825
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 2 cut(s) 8, 108
BfuI GTATCC 1 cut(s) 345
BglII AGATCT 1 cut(s) 464
BisI GCNGC 3 cut(s) 105, 112, 744
BlsI GCNGC 3 cut(s) 106, 113, 745
Bme1390I CCNGG 2 cut(s) 363, 641
Bme18I GGWCC 2 cut(s) 223, 842
BmgT120I GGNCC 3 cut(s) 223, 542, 842
BmiI GGNNCC 2 cut(s) 544, 910
BmrFI CCNGG 2 cut(s) 363, 641
BmsI GCATC 2 cut(s) 110, 541
BmtI GCTAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 934
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 4 cut(s) 300, 330, 673, 703
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse1I ACTGG 2 cut(s) 534, 894
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 363, 641
BseGI GGATG 2 cut(s) 64, 649
BseLI CCNNNNNNNGG 1 cut(s) 897
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 130, 370, 639
BseNI ACTGG 2 cut(s) 534, 894
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 3 cut(s) 116, 123, 755
BsgI GTGCAG 2 cut(s) 515, 942
BshFI GGCC 2 cut(s) 361, 543
BshNI GGYRCC 1 cut(s) 908
BsiHKAI GWGCWC 2 cut(s) 20, 626
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 2 cut(s) 228, 773
BslI CCNNNNNNNGG 1 cut(s) 897
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 2 cut(s) 228, 773
BsnI GGCC 2 cut(s) 361, 543
Bsp1286I GDGCHC 2 cut(s) 20, 626
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 232, 464, 636, 753, 825, 979
BspACI CCGC 1 cut(s) 324
BspANI GGCC 2 cut(s) 361, 543
BspCNI CTCAG 3 cut(s) 129, 369, 638
BspLI GGNNCC 2 cut(s) 544, 910
BspOI GCTAGC 1 cut(s) 111
BspPI GGATC 2 cut(s) 227, 631
BspQI GCTCTTC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 908
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 2 cut(s) 534, 894
BssMI GATC 6 cut(s) 232, 464, 636, 753, 825, 979
Bst2UI CCWGG 2 cut(s) 363, 641
Bst4CI ACNGT 1 cut(s) 670
Bst6I CTCTTC 2 cut(s) 150, 417
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 116, 356, 625
BstEII GGTNACC 1 cut(s) 817
BstF5I GGATG 2 cut(s) 64, 649
BstKTI GATC 6 cut(s) 235, 467, 639, 756, 828, 982
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 6 cut(s) 232, 464, 636, 753, 825, 979
BstMWI GCNNNNNNNGC 2 cut(s) 120, 662
BstNI CCWGG 2 cut(s) 363, 641
BstNSI RCATGY 1 cut(s) 376
BstPI GGTNACC 1 cut(s) 817
BstSCI CCNGG 2 cut(s) 361, 639
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 3 cut(s) 116, 123, 755
BstX2I RGATCY 2 cut(s) 232, 464
BstYI RGATCY 2 cut(s) 232, 464
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 2 cut(s) 361, 543
BtsCI GGATG 2 cut(s) 64, 649
BtsI GCAGTG 3 cut(s) 503, 534, 954
BtsIMutI CAGTG 6 cut(s) 339, 459, 503, 534, 541, 954
Cac8I GCNNGC 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 223, 542, 842
Csp6I GTAC 1 cut(s) 694
CviAII CATG 4 cut(s) 237, 373, 518, 929
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 3 cut(s) 116, 356, 625
DpnI GATC 6 cut(s) 234, 466, 638, 755, 827, 981
DpnII GATC 6 cut(s) 232, 464, 636, 753, 825, 979
Eam1104I CTCTTC 2 cut(s) 150, 417
EarI CTCTTC 2 cut(s) 150, 417
Ecl136II GAGCTC 1 cut(s) 624
Eco147I AGGCCT 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 626
Eco47I GGWCC 2 cut(s) 223, 842
Eco53kI GAGCTC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 817
EcoICRI GAGCTC 1 cut(s) 624
EcoO65I GGTNACC 1 cut(s) 817
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 361, 639
EcoT22I ATGCAT 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 626
FaeI CATG 4 cut(s) 240, 376, 521, 932
FaqI GGGAC 2 cut(s) 228, 773
FatI CATG 4 cut(s) 236, 372, 517, 928
FbaI TGATCA 2 cut(s) 753, 825
Fnu4HI GCNGC 3 cut(s) 105, 112, 744
FokI GGATG 2 cut(s) 71, 656
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 105, 112, 744
FspBI CTAG 2 cut(s) 8, 108
GluI GCNGC 3 cut(s) 105, 112, 744
HaeIII GGCC 2 cut(s) 361, 543
HapII CCGG 1 cut(s) 306
Hin1II CATG 4 cut(s) 240, 376, 521, 932
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 3 cut(s) 582, 595, 938
HpaII CCGG 1 cut(s) 306
HphI GGTGA 4 cut(s) 298, 313, 721, 811
Hpy166II GTNNAC 4 cut(s) 18, 223, 289, 694
Hpy188I TCNGA 3 cut(s) 119, 628, 778
Hpy188III TCNNGA 4 cut(s) 39, 368, 706, 977
Hpy8I GTNNAC 4 cut(s) 18, 223, 289, 694
HpyAV CCTTC 3 cut(s) 505, 773, 895
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 662
HpyF3I CTNAG 3 cut(s) 116, 356, 625
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 240, 376, 521, 932
Ksp22I TGATCA 2 cut(s) 753, 825
Kzo9I GATC 6 cut(s) 232, 464, 636, 753, 825, 979
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 3 cut(s) 116, 123, 755
LweI GCATC 2 cut(s) 110, 541
MaeI CTAG 2 cut(s) 8, 108
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 23, 529, 817
MalI GATC 6 cut(s) 234, 466, 638, 755, 827, 981
MboI GATC 6 cut(s) 232, 464, 636, 753, 825, 979
MboII GAAGA 7 cut(s) 167, 206, 278, 434, 445, 459, 696
MflI RGATCY 2 cut(s) 232, 464
MhlI GDGCHC 2 cut(s) 20, 626
MluCI AATT 4 cut(s) 401, 448, 719, 987
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 1 cut(s) 748
MnlI CCTC 6 cut(s) 125, 855, 922, 928, 958, 984
Mph1103I ATGCAT 1 cut(s) 125
MseI TTAA 4 cut(s) 48, 228, 794, 804
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 2 cut(s) 363, 641
MvaI CCWGG 2 cut(s) 363, 641
MwoI GCNNNNNNNGC 2 cut(s) 120, 662
NdeII GATC 6 cut(s) 232, 464, 636, 753, 825, 979
NheI GCTAGC 1 cut(s) 107
NlaIII CATG 4 cut(s) 240, 376, 521, 932
NlaIV GGNNCC 2 cut(s) 544, 910
NmuCI GTSAC 2 cut(s) 529, 817
NsiI ATGCAT 1 cut(s) 125
NspI RCATGY 1 cut(s) 376
PceI AGGCCT 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 595, 938
PfoI TCCNGGA 1 cut(s) 639
PkrI GCNGC 3 cut(s) 106, 113, 745
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 361, 639
PspEI GGTNACC 1 cut(s) 817
PspGI CCWGG 2 cut(s) 361, 639
PspN4I GGNNCC 2 cut(s) 544, 910
PspPI GGNCC 3 cut(s) 223, 542, 842
PsuI RGATCY 2 cut(s) 232, 464
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
SacI GAGCTC 1 cut(s) 626
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 4 cut(s) 48, 228, 794, 804
SatI GCNGC 3 cut(s) 105, 112, 744
Sau3AI GATC 6 cut(s) 232, 464, 636, 753, 825, 979
Sau96I GGNCC 3 cut(s) 223, 542, 842
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 363, 641
SduI GDGCHC 2 cut(s) 20, 626
SfaNI GCATC 2 cut(s) 110, 541
SinI GGWCC 2 cut(s) 223, 842
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
Sse9I AATT 4 cut(s) 401, 448, 719, 987
SseBI AGGCCT 1 cut(s) 361
SsiI CCGC 1 cut(s) 324
SspMI CTAG 2 cut(s) 8, 108
SstI GAGCTC 1 cut(s) 626
StuI AGGCCT 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 361, 639
TaaI ACNGT 1 cut(s) 670
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 831
TasI AATT 4 cut(s) 401, 448, 719, 987
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 2 cut(s) 595, 938
Tru1I TTAA 4 cut(s) 48, 228, 794, 804
Tru9I TTAA 4 cut(s) 48, 228, 794, 804
TscAI CASTG 6 cut(s) 346, 459, 503, 534, 541, 961
TseFI GTSAC 2 cut(s) 529, 817
TseI GCWGC 3 cut(s) 104, 111, 743
Tsp45I GTSAC 2 cut(s) 529, 817
TspDTI ATGAA 2 cut(s) 81, 703
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 6 cut(s) 346, 459, 503, 534, 541, 961
VneI GTGCAC 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 223, 842
XapI RAATTY 2 cut(s) 401, 448
XceI RCATGY 1 cut(s) 376
XspI CTAG 2 cut(s) 8, 108
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.