Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006339.1

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

53563 .. 57288

Gene Structure 3726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006339.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtggagatcttacccgaatgacaagttattgcttgtgcaagcattacggaagggggcagatgttgttgcagtaacaggagatgacactaatgatgcttctgcccttcatgaggcagatattggtctatctatgggcattcaaggaactgaagttgcaaaagaaagttcggatatcattatcttggatgataattttgcttctgttgtaaaggttgattgctggggacgttctgtgtatgcaaatattcagaaatttatccaattccagctgactgctaacgttgctgctcttgaaattaatgttgttgcagcaatatccttcgccatgaccgcctccaactccaattctctccctccatctcagccatggccgccgtgcacgaatatcccactggtccaaaccgttcctcaagtacctaataccggagccctagcccaaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

148

Amino Acids

15.8

Weight (kDa)

4.44

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	333, 374
AclI	AACGTT	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	2 cut(s)	112, 425
AgsI	TTSAA	2 cut(s)	143, 296
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	383
Alw44I	GTGCAC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	287, 311
ApoI	RAATTY	1 cut(s)	254
AseI	ATTAAT	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	274, 323
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	434
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	3 cut(s)	288, 312, 374
BlsI	GCNGC	3 cut(s)	289, 313, 375
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	430
BmsI	GCATC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 425
Bse1I	ACTGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	112, 425
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	274, 323
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	112, 425
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	373
Bsp1286I	GDGCHC	2 cut(s)	383, 433
Bsp143I	GATC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	2 cut(s)	333, 374
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	368
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 332, 373
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	274, 323
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	3 cut(s)	110, 328, 369
CviJI	RGCY	5 cut(s)	271, 367, 373, 431, 437
CviKI_1	RGCY	5 cut(s)	271, 367, 373, 431, 437
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
EaeI	YGGCCR	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	433
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	3 cut(s)	113, 331, 372
FaiI	YATR	5 cut(s)	111, 134, 240, 329, 370
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	3 cut(s)	109, 327, 368
Fnu4HI	GCNGC	3 cut(s)	288, 312, 374
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	3 cut(s)	288, 312, 374
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	3 cut(s)	288, 312, 374
GsaI	CCCAGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	3 cut(s)	113, 331, 372
HpaII	CCGG	1 cut(s)	426
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	2 cut(s)	172, 252
Hpy188III	TCNNGA	2 cut(s)	110, 293
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	46, 116, 331
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	2 cut(s)	229, 282
HpyCH4V	TGCA	6 cut(s)	40, 71, 158, 242, 311, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 332, 373
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	229, 282
Hsp92II	CATG	3 cut(s)	113, 331, 372
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	5 cut(s)	63, 208, 281, 380, 439
Lsp1109I	GCAGC	2 cut(s)	274, 323
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	229, 282
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	383, 433
MluCI	AATT	5 cut(s)	193, 254, 263, 297, 346
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	106, 346, 366, 420
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	284, 332, 373
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	3 cut(s)	113, 331, 372
NlaIV	GGNNCC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	109
PctI	GAATGC	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	289, 313, 375
PshBI	ATTAAT	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	288, 312, 374
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	383, 433
SetI	ASST	5 cut(s)	216, 232, 273, 285, 421
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	5 cut(s)	193, 254, 263, 297, 346
SsiI	CCGC	2 cut(s)	333, 374
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	2 cut(s)	232, 285
TasI	AATT	5 cut(s)	193, 254, 263, 297, 346
TauI	GCSGC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	2 cut(s)	287, 311
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	399
VneI	GTGCAC	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	366
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.