Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

34420783 .. 34423993

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0318500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGATTTCCTTGGCCATTCCACAAAACAGAACTATGATTCCAGTGGGACCAGACTGGTCTTGAAAACTGGGGAGTCGAAAAAAAATGTTGTTGGGGCAGCTGCCGCTGCTCTAAATCTGATAAAGAATGAAGAAGTGCAAGCCATCATCGGGCCAGTGACATCAATGGAGACAAGCTTTGTCATCAATCTCGGAGACCAAACTCATGTGCCCATCATATCATTTTCAGCAACAAGTCCTTCGCTTACTTCCCTCCGGAGCTCCTACTTTTTCCAGTTTGCACAAAATGACACATCCCAAGTGAAAGCTATAAGTGCAGTCATTAACAATTACGGGTGGAGACAAGTTGTGCCTATATACATAGACACTTCGTACGGGGAGGCAGTCATACCATTCTTAACCGATGCCTTACAAGAGATAGGTGTAAGTGTCCCCTACCGGAGTGTGATTTCCCCCTCTGCAACTGATGATCAAATTGCCAACGAGCTTTACAAGCTAATGATCATGCAAACTAGAGTCTTCATTGTCCATATGACAACCGATCTAAGCTCTAAGCTATTTGCCAAGGCAGAAGAGATTGGAATGATGGTTGAAGGCTATGTTTGGCTAACCACAAGTGGAATAACTAATCGTTTAACATCACTGAACTCTTCAGTAATCCATTCCATGAATGGAGCCATAGGTGTGCAAACTCATGTCCAAAAAACAGCAGAGCTAGAAGAATTCAAACTCCGGTGGAAAAGGCAATTCCAAAAGGACCATCCACTCATCGTTGGCGCTGAATTGGATGTTTTCGGATTTTGGGCTTATGATGCTACTTTTGCACTAGCAATGGCAATTGAACAAGTGATTGGCAATACAAGTAGTTTTGATTTCCAAAAGCCAAATGCCTCCAACAAGTCCACAGATATTCTTGACAGTTTTCCAATCTCTCCATATGGTCCAAAACTTTGCAAAGCCCTATCAACTACTAGATTCCCAGGCATTGCTGGAGATTTAATGCTCATTGATGGGCAACTTCAATCATCTAATTTTCGGATAATTAATGTCAACGGCCGTGGAGCAAGAACAATTGGATTTTGGACACCACACCATGGACTTGTTAGCAAAATGAATTATTCCACAAGCCATCTTGGACCTGTCATATGGCCAGGAGAGTCTCTCTCTGTTCCCAAAGGGTGGGAGATCCCAACAAAGGGCAAGAGGTTGAGAATAGGAGTTCCTGTAAAGGATGGGTTTTTCGAGCTTGTTAAGGTAACAAAAGATCCAACCAAGAACACAACGGATGCTACCGGATTCAGTATTGATGTGTTTAAGGCCGTAGTTGAGAAGTTGCCATATGCTATTTCGTATGACTTCATTCCTTTTGCAAAGCCTGATGGCACCACAGCTGGCAATTACAATGATATGTGCTATCAAGTGTACCTTGGGAACTTTGATGCTGTGGTCGGAGATACAACAATTAGAGCAAATAGGTCTCTGTATGTGGATTTTACGATGCCATATGCAGACACCGGAGTAGTAATGGTTGTACCCGTCGTAGACACAAATAAAAGAAGTGCATGGGCATTCTTGAAGCCATGGGAATGGGACATTTGGCTTGCAATCATTATTTCCTTATTGTCAGTTGGTTTTGTCGTTTGGGCCGTTGAACATCACACTAATGAAGACTTTCGGGGCAAAACAGCTGAGCAAGAAGTTGGCAAAGTTGTCTGGTTCTCCTTTTCAACCATGGTTTTTGCTCACCATGAGAGAGTGGATAGCAACTTGGCTAGACTTGTTATGAGTATATGGATATTTGTTGTACTGGTGCTGACAATAAATTACCAAGCAAGTCTAACCTCAATATATACGGTTGAAAAACTTGAGCCAACTATTACCAGTATCCAGGATATATTAAGGAAGGGGGAAAACATTGGCTATATAGCATCTTCTTTTACTTACGAGACGTTGAAGCAAGTAGGTTTTGAAGATTCCAAGCTTAGGGCTTTCAGAACTATGGAAGCAATTGACGATGCTCTTTCAAACAGTGGCATCGCTGGTTTTGTTGATGAAACACCCTATATGAAGCTTTTTCTTGCAAGATATTGCAACAAATATACCATGATTGGACCCATCTTCAAAACCGATGGATTTGGCTTTTGGTTGATTTCTTTTGAGTTGACCTTGCTGGTATTTCCAAAACGCTCTCCTCTTCTACCGGATGTTTCCCAGGCAGTCCTGAACATTACCGGGGGAGAAACGATACTGAACATTGAAAACACATGGTTCAAGAAAGACGGCAACTGTGAAGACGTTAGTAACCCAAAAGTTTCGAGCAATAAACTTGACTTGAGAGACTTTCGGGTCCTATTTATCACTACCTTGGTGGCTTCAGGACTTGCTCTCATCATATATATAATTCGGTTCAGTTACAAGTATAGGGACGTTTGGAATTCTGAAACATCTATATGTAGAAGGATTGGGGCCATGTTAAAAAAATTTGTTGATATAGACCCCAATTCTCATACTTTTAGAAGCCAGCAGCCGGATGTAGTTACAACCTTTCCAAACAACAGTAGCCCAGAAAGGCCGGTACTCATCCAGAATTCAAACCACTCAAATACGAATTATGTATCTTCTGATTCTGATTCTGATTCTGGACAGCAACGAACATCTACTGAGTCTCCTGCTGAAGTTCATCTACTGATCAGCAATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

900

Amino Acids

100.39

Weight (kDa)

6.06

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	12 - 352	8.3e-77	Receptor family ligand binding region
Peripla_BP_6	PF13458	16 - 285	1.4e-16	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	418 - 511	7.5e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	427 - 758	3.1e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	529 - 791	1.6e-32	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2345
AccB1I	GGYRCC	1 cut(s)	1382
AccB7I	CCANNNNNTGG	2 cut(s)	1094, 1179
AccI	GTMKAC	1 cut(s)	1542
AccIII	TCCGGA	1 cut(s)	255
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	2 cut(s)	1180, 1259
AcoI	YGGCCR	3 cut(s)	13, 1054, 1148
AcsI	RAATTY	4 cut(s)	722, 2434, 2480, 2587
AcuI	CTGAAG	3 cut(s)	636, 2358, 2694
AfaI	GTAC	5 cut(s)	374, 1424, 1533, 1806, 2577
AfiI	CCNNNNNNNGG	7 cut(s)	150, 1094, 1179, 1195, 1196, 1983, 2527
AjnI	CCWGG	4 cut(s)	979, 1150, 1887, 2211
AjuI	GAANNNNNNNTTGG	2 cut(s)	834, 866
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	8 cut(s)	164, 189, 334, 1164, 1482, 1940, 2331, 2670
AlwI	GGATC	2 cut(s)	1180, 1259
Aor13HI	TCCGGA	1 cut(s)	255
AoxI	GGCC	8 cut(s)	13, 152, 1054, 1148, 1317, 1644, 2466, 2570
ApeKI	GCWGC	4 cut(s)	98, 101, 107, 2524
ApoI	RAATTY	4 cut(s)	722, 2434, 2480, 2587
AseI	ATTAAT	1 cut(s)	1044
Asp700I	GAANNNNTTC	1 cut(s)	1671
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	9 cut(s)	48, 152, 757, 941, 1136, 1644, 2111, 2347, 2466
AsuC2I	CCSGG	1 cut(s)	2233
AsuHPI	GGTGA	1 cut(s)	1736
AvaII	GGWCC	6 cut(s)	48, 757, 941, 1136, 2111, 2347
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	2 cut(s)	15, 1150
BanI	GGYRCC	1 cut(s)	1382
BanII	GRGCYC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	2667, 2699
BbsI	GAAGAC	3 cut(s)	511, 1674, 2298
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	4 cut(s)	88, 94, 110, 2536
BceAI	ACGGC	5 cut(s)	1041, 1069, 1304, 1631, 2296
BciT130I	CCWGG	4 cut(s)	981, 1152, 1889, 2213
BciVI	GTATCC	1 cut(s)	1895
BclI	TGATCA	3 cut(s)	469, 501, 2688
BcnI	CCSGG	1 cut(s)	2233
BcoDI	GTCTC	8 cut(s)	164, 189, 334, 1164, 1482, 1940, 2331, 2670
BfaI	CTAG	5 cut(s)	513, 716, 827, 972, 1773
BfoI	RGCGCY	1 cut(s)	780
BfuI	GTATCC	1 cut(s)	1895
BisI	GCNGC	5 cut(s)	99, 102, 105, 108, 2525
BlpI	GCTNAGC	1 cut(s)	1689
BlsI	GCNGC	5 cut(s)	100, 103, 106, 109, 2526
Bme1390I	CCNGG	5 cut(s)	981, 1152, 1889, 2213, 2233
Bme18I	GGWCC	6 cut(s)	48, 757, 941, 1136, 2111, 2347
BmgT120I	GGNCC	9 cut(s)	48, 152, 757, 941, 1136, 1644, 2111, 2347, 2466
BmiI	GGNNCC	6 cut(s)	49, 676, 1384, 2113, 2348, 2467
BmrFI	CCNGG	5 cut(s)	981, 1152, 1889, 2213, 2233
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	8 cut(s)	394, 802, 1276, 1429, 1488, 1937, 2005, 2043
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	3 cut(s)	511, 1674, 2298
BplI	GAGNNNNNCTC	4 cut(s)	1146, 1178, 1148, 1180
BpmI	CTGGAG	1 cut(s)	1011
Bpu10I	CCTNAGC	1 cut(s)	1982
Bpu1102I	GCTNAGC	1 cut(s)	1689
BpuEI	CTTGAG	2 cut(s)	1886, 2353
BpuMI	CCSGG	1 cut(s)	2233
BsaI	GGTCTC	2 cut(s)	189, 1482
BsaWI	WCCGGW	6 cut(s)	255, 438, 732, 1292, 1514, 2200
BsaXI	ACNNNNNCTCC	4 cut(s)	1209, 1239, 2650, 2680
Bsc4I	CCNNNNNNNGG	7 cut(s)	150, 1094, 1179, 1195, 1196, 1983, 2527
Bse118I	RCCGGY	1 cut(s)	2572
Bse1I	ACTGG	7 cut(s)	42, 60, 73, 155, 274, 1812, 1881
Bse3DI	GCAATG	2 cut(s)	837, 984
BseAI	TCCGGA	1 cut(s)	255
BseBI	CCWGG	4 cut(s)	981, 1152, 1889, 2213
BseGI	GGATG	8 cut(s)	293, 760, 793, 1237, 1291, 2209, 2536, 2580
BseLI	CCNNNNNNNGG	7 cut(s)	150, 1094, 1179, 1195, 1196, 1983, 2527
BseMI	GCAATG	2 cut(s)	837, 984
BseMII	CTCAG	2 cut(s)	1680, 2652
BseNI	ACTGG	7 cut(s)	42, 60, 73, 155, 274, 1812, 1881
BseRI	GAGGAG	1 cut(s)	2181
BseSI	GKGCMC	1 cut(s)	213
BseX3I	CGGCCG	1 cut(s)	1054
BseXI	GCAGC	4 cut(s)	88, 94, 110, 2536
BsgI	GTGCAG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	1057
BshFI	GGCC	8 cut(s)	15, 154, 1056, 1150, 1319, 1646, 2468, 2572
BshNI	GGYRCC	1 cut(s)	1382
BsiEI	CGRYCG	1 cut(s)	1057
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	9 cut(s)	256, 439, 733, 1293, 1515, 2201, 2232, 2528, 2573
BsiWI	CGTACG	1 cut(s)	372
BslFI	GGGAC	4 cut(s)	61, 416, 1604, 2438
BslI	CCNNNNNNNGG	7 cut(s)	150, 1094, 1179, 1195, 1196, 1983, 2527
BsmAI	GTCTC	8 cut(s)	164, 189, 334, 1164, 1482, 1940, 2331, 2670
BsmBI	CGTCTC	1 cut(s)	1940
BsmFI	GGGAC	4 cut(s)	61, 416, 1604, 2438
BsmI	GAATGC	1 cut(s)	1568
BsnI	GGCC	8 cut(s)	15, 154, 1056, 1150, 1319, 1646, 2468, 2572
Bso31I	GGTCTC	2 cut(s)	189, 1482
Bsp1286I	GDGCHC	2 cut(s)	213, 263
Bsp13I	TCCGGA	1 cut(s)	255
Bsp143I	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
Bsp1720I	GCTNAGC	1 cut(s)	1689
Bsp19I	CCATGG	3 cut(s)	1093, 1580, 1731
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	8 cut(s)	15, 154, 1056, 1150, 1319, 1646, 2468, 2572
BspCNI	CTCAG	2 cut(s)	1681, 2653
BspEI	TCCGGA	1 cut(s)	255
BspLI	GGNNCC	6 cut(s)	49, 676, 1384, 2113, 2348, 2467
BspPI	GGATC	2 cut(s)	1180, 1259
BspT107I	GGYRCC	1 cut(s)	1382
BspTNI	GGTCTC	2 cut(s)	189, 1482
BsrDI	GCAATG	2 cut(s)	837, 984
BsrFI	RCCGGY	1 cut(s)	2572
BsrI	ACTGG	7 cut(s)	42, 60, 73, 155, 274, 1812, 1881
BssAI	RCCGGY	1 cut(s)	2572
BssMI	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
BssT1I	CCWWGG	7 cut(s)	10, 564, 1093, 1426, 1580, 1731, 2364
Bst2UI	CCWGG	4 cut(s)	981, 1152, 1889, 2213
Bst4CI	ACNGT	5 cut(s)	920, 1855, 2030, 2288, 2558
Bst6I	CTCTTC	3 cut(s)	567, 655, 2199
BstC8I	GCNNGC	4 cut(s)	141, 1393, 1602, 2522
BstDEI	CTNAG	5 cut(s)	545, 552, 1689, 1982, 2661
BstDSI	CCRYGG	4 cut(s)	1057, 1093, 1580, 1731
BstF5I	GGATG	8 cut(s)	293, 760, 793, 1237, 1291, 2209, 2536, 2580
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	6 cut(s)	472, 504, 544, 1188, 1267, 2691
BstMAI	GTCTC	8 cut(s)	164, 189, 334, 1164, 1482, 1940, 2331, 2670
BstMBI	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
BstMCI	CGRYCG	1 cut(s)	1057
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 107, 314, 493, 812, 821
BstNI	CCWGG	4 cut(s)	981, 1152, 1889, 2213
BstSCI	CCNGG	5 cut(s)	979, 1150, 1887, 2211, 2231
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	88, 94, 110, 2536
BstV2I	GAAGAC	3 cut(s)	511, 1674, 2298
BstX2I	RGATCY	2 cut(s)	1185, 1264
BstXI	CCANNNNNNTGG	1 cut(s)	1587
BstYI	RGATCY	2 cut(s)	1185, 1264
BstZI	CGGCCG	1 cut(s)	1054
BsuI	GTATCC	1 cut(s)	1895
BsuRI	GGCC	8 cut(s)	15, 154, 1056, 1150, 1319, 1646, 2468, 2572
BtgI	CCRYGG	4 cut(s)	1057, 1093, 1580, 1731
BtgZI	GCGATG	1 cut(s)	2020
BtsCI	GGATG	8 cut(s)	293, 760, 793, 1237, 1291, 2209, 2536, 2580
BtsIMutI	CAGTG	5 cut(s)	49, 162, 641, 2035, 2698
Cac8I	GCNNGC	4 cut(s)	141, 1393, 1602, 2522
CfoI	GCGC	1 cut(s)	779
Cfr10I	RCCGGY	1 cut(s)	2572
Cfr13I	GGNCC	9 cut(s)	48, 152, 757, 941, 1136, 1644, 2111, 2347, 2466
Csp6I	GTAC	5 cut(s)	373, 1423, 1532, 1805, 2576
CspCI	CAANNNNNGTGG	2 cut(s)	1039, 1074
CviQI	GTAC	5 cut(s)	373, 1423, 1532, 1805, 2576
DdeI	CTNAG	5 cut(s)	545, 552, 1689, 1982, 2661
DpnI	GATC	6 cut(s)	471, 503, 543, 1187, 1266, 2690
DpnII	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
DrdI	GACNNNNNNGTC	1 cut(s)	2345
DseDI	GACNNNNNNGTC	1 cut(s)	2345
EaeI	YGGCCR	3 cut(s)	13, 1054, 1148
EagI	CGGCCG	1 cut(s)	1054
Eam1104I	CTCTTC	3 cut(s)	567, 655, 2199
EarI	CTCTTC	3 cut(s)	567, 655, 2199
Ecl136II	GAGCTC	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	1054
Eco130I	CCWWGG	7 cut(s)	10, 564, 1093, 1426, 1580, 1731, 2364
Eco24I	GRGCYC	1 cut(s)	263
Eco31I	GGTCTC	2 cut(s)	189, 1482
Eco47I	GGWCC	6 cut(s)	48, 757, 941, 1136, 2111, 2347
Eco52I	CGGCCG	1 cut(s)	1054
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	3 cut(s)	636, 2358, 2694
EcoICRI	GAGCTC	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	2347
EcoRI	GAATTC	3 cut(s)	722, 2434, 2587
EcoRII	CCWGG	4 cut(s)	979, 1150, 1887, 2211
EcoT14I	CCWWGG	7 cut(s)	10, 564, 1093, 1426, 1580, 1731, 2364
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	7 cut(s)	10, 564, 1093, 1426, 1580, 1731, 2364
Esp3I	CGTCTC	1 cut(s)	1940
FalI	AAGNNNNNCTT	2 cut(s)	1410, 1442
FaqI	GGGAC	4 cut(s)	61, 416, 1604, 2438
FauNDI	CATATG	5 cut(s)	531, 937, 1145, 1339, 1504
FbaI	TGATCA	3 cut(s)	469, 501, 2688
FblI	GTMKAC	1 cut(s)	1542
Fnu4HI	GCNGC	5 cut(s)	99, 102, 105, 108, 2525
FokI	GGATG	8 cut(s)	280, 747, 800, 1244, 1298, 2216, 2543, 2567
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	5 cut(s)	99, 102, 105, 108, 2525
FspBI	CTAG	5 cut(s)	513, 716, 827, 972, 1773
GlaI	GCGC	1 cut(s)	778
GluI	GCNGC	5 cut(s)	99, 102, 105, 108, 2525
GsuI	CTGGAG	1 cut(s)	1011
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	8 cut(s)	15, 154, 1056, 1150, 1319, 1646, 2468, 2572
HapII	CCGG	9 cut(s)	256, 439, 733, 1293, 1515, 2201, 2232, 2528, 2573
HhaI	GCGC	1 cut(s)	779
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HincII	GTYRAC	2 cut(s)	1051, 2163
HindII	GTYRAC	2 cut(s)	1051, 2163
HindIII	AAGCTT	3 cut(s)	175, 1979, 2069
HpaII	CCGG	9 cut(s)	256, 439, 733, 1293, 1515, 2201, 2232, 2528, 2573
HphI	GGTGA	1 cut(s)	1736
Hpy166II	GTNNAC	5 cut(s)	903, 1051, 1423, 1543, 2163
Hpy188III	TCNNGA	9 cut(s)	61, 256, 914, 1573, 2221, 2272, 2376, 2584, 2640
Hpy8I	GTNNAC	5 cut(s)	903, 1051, 1423, 1543, 2163
Hpy99I	CGWCG	1 cut(s)	1541
HpyAV	CCTTC	4 cut(s)	249, 587, 1897, 2451
HpyCH4III	ACNGT	5 cut(s)	920, 1855, 2030, 2288, 2558
HpyCH4IV	ACGT	3 cut(s)	1949, 2295, 2427
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 107, 314, 493, 812, 821
HpyF3I	CTNAG	5 cut(s)	545, 552, 1689, 1982, 2661
HpySE526I	ACGT	3 cut(s)	1949, 2295, 2427
HspAI	GCGC	1 cut(s)	777
Kpn2I	TCCGGA	1 cut(s)	255
Ksp22I	TGATCA	3 cut(s)	469, 501, 2688
Kzo9I	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
LmnI	GCTCC	4 cut(s)	258, 266, 674, 1061
Lsp1109I	GCAGC	4 cut(s)	88, 94, 110, 2536
LweI	GCATC	8 cut(s)	394, 802, 1276, 1429, 1488, 1937, 2005, 2043
MaeI	CTAG	5 cut(s)	513, 716, 827, 972, 1773
MaeII	ACGT	3 cut(s)	1949, 2295, 2427
MaeIII	GTNAC	5 cut(s)	157, 1255, 2300, 2411, 2536
MalI	GATC	6 cut(s)	471, 503, 543, 1187, 1266, 2690
MboI	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
MfeI	CAATTG	3 cut(s)	837, 1071, 2007
MflI	RGATCY	2 cut(s)	1185, 1264
MhlI	GDGCHC	2 cut(s)	213, 263
MlsI	TGGCCA	2 cut(s)	15, 1150
MluNI	TGGCCA	2 cut(s)	15, 1150
MlyI	GAGTC	4 cut(s)	83, 525, 1166, 2672
MmeI	TCCRAC	3 cut(s)	918, 1292, 1429
MnlI	CCTC	7 cut(s)	263, 373, 466, 901, 1197, 1852, 2202
Mox20I	TGGCCA	2 cut(s)	15, 1150
MroI	TCCGGA	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	1671
MscI	TGGCCA	2 cut(s)	15, 1150
MseI	TTAA	9 cut(s)	324, 398, 635, 998, 1044, 1251, 1314, 1898, 2474
MslI	CAYNNNNRTG	4 cut(s)	683, 1585, 1662, 2449
Msp20I	TGGCCA	2 cut(s)	15, 1150
MspA1I	CMGCKG	4 cut(s)	101, 107, 1391, 1688
MspI	CCGG	9 cut(s)	256, 439, 733, 1293, 1515, 2201, 2232, 2528, 2573
MspR9I	CCNGG	5 cut(s)	981, 1152, 1889, 2213, 2233
MunI	CAATTG	3 cut(s)	837, 1071, 2007
Mva1269I	GAATGC	1 cut(s)	1568
MvaI	CCWGG	4 cut(s)	981, 1152, 1889, 2213
MwoI	GCNNNNNNNGC	6 cut(s)	104, 107, 314, 493, 812, 821
NciI	CCSGG	1 cut(s)	2233
NcoI	CCATGG	3 cut(s)	1093, 1580, 1731
NdeI	CATATG	5 cut(s)	531, 937, 1145, 1339, 1504
NdeII	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
NlaIV	GGNNCC	6 cut(s)	49, 676, 1384, 2113, 2348, 2467
NmuCI	GTSAC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	1644
PctI	GAATGC	1 cut(s)	1568
PdmI	GAANNNNTTC	1 cut(s)	1671
PfeI	GAWTC	7 cut(s)	38, 975, 1296, 1973, 2624, 2630, 2636
Pfl23II	CGTACG	1 cut(s)	372
PflMI	CCANNNNNTGG	2 cut(s)	1094, 1179
PfoI	TCCNGGA	1 cut(s)	1887
PkrI	GCNGC	5 cut(s)	100, 103, 106, 109, 2526
PleI	GAGTC	4 cut(s)	82, 524, 1165, 2671
PpsI	GAGTC	4 cut(s)	82, 524, 1165, 2671
PpuMI	RGGWCCY	1 cut(s)	2347
PshBI	ATTAAT	1 cut(s)	1044
Psp124BI	GAGCTC	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	2347
Psp6I	CCWGG	4 cut(s)	979, 1150, 1887, 2211
PspGI	CCWGG	4 cut(s)	979, 1150, 1887, 2211
PspLI	CGTACG	1 cut(s)	372
PspN4I	GGNNCC	6 cut(s)	49, 676, 1384, 2113, 2348, 2467
PspPI	GGNCC	9 cut(s)	48, 152, 757, 941, 1136, 1644, 2111, 2347, 2466
PspPPI	RGGWCCY	1 cut(s)	2347
PsuI	RGATCY	2 cut(s)	1185, 1264
PvuII	CAGCTG	3 cut(s)	101, 1391, 1688
RsaI	GTAC	5 cut(s)	374, 1424, 1533, 1806, 2577
RsaNI	GTAC	5 cut(s)	373, 1423, 1532, 1805, 2576
RseI	CAYNNNNRTG	4 cut(s)	683, 1585, 1662, 2449
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	9 cut(s)	324, 398, 635, 998, 1044, 1251, 1314, 1898, 2474
SatI	GCNGC	5 cut(s)	99, 102, 105, 108, 2525
Sau3AI	GATC	6 cut(s)	469, 501, 541, 1185, 1264, 2688
Sau96I	GGNCC	9 cut(s)	48, 152, 757, 941, 1136, 1644, 2111, 2347, 2466
SchI	GAGTC	4 cut(s)	83, 525, 1166, 2672
ScrFI	CCNGG	5 cut(s)	981, 1152, 1889, 2213, 2233
SduI	GDGCHC	2 cut(s)	213, 263
SfaNI	GCATC	8 cut(s)	394, 802, 1276, 1429, 1488, 1937, 2005, 2043
SinI	GGWCC	6 cut(s)	48, 757, 941, 1136, 2111, 2347
SmiMI	CAYNNNNRTG	4 cut(s)	683, 1585, 1662, 2449
SmlI	CTYRAG	2 cut(s)	1865, 2332
SmoI	CTYRAG	2 cut(s)	1865, 2332
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	5 cut(s)	513, 716, 827, 972, 1773
SstI	GAGCTC	1 cut(s)	263
StyD4I	CCNGG	5 cut(s)	979, 1150, 1887, 2211, 2231
StyI	CCWWGG	7 cut(s)	10, 564, 1093, 1426, 1580, 1731, 2364
TaaI	ACNGT	5 cut(s)	920, 1855, 2030, 2288, 2558
TaiI	ACGT	3 cut(s)	1952, 2298, 2430
TaqI	TCGA	3 cut(s)	77, 1242, 2315
TatI	WGTACW	1 cut(s)	1804
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	7 cut(s)	38, 975, 1296, 1973, 2624, 2630, 2636
Tru1I	TTAA	9 cut(s)	324, 398, 635, 998, 1044, 1251, 1314, 1898, 2474
Tru9I	TTAA	9 cut(s)	324, 398, 635, 998, 1044, 1251, 1314, 1898, 2474
TscAI	CASTG	4 cut(s)	49, 162, 648, 2035
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	98, 101, 107, 2524
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	9 cut(s)	144, 511, 683, 1127, 1348, 1680, 2067, 2081, 2669
TspGWI	ACGGA	1 cut(s)	1298
TspRI	CASTG	4 cut(s)	49, 162, 648, 2035
Van91I	CCANNNNNTGG	2 cut(s)	1094, 1179
VpaK11BI	GGWCC	6 cut(s)	48, 757, 941, 1136, 2111, 2347
VspI	ATTAAT	1 cut(s)	1044
XapI	RAATTY	4 cut(s)	722, 2434, 2480, 2587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	1542
XmnI	GAANNNNTTC	1 cut(s)	1671
XspI	CTAG	5 cut(s)	513, 716, 827, 972, 1773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.