RLG00000003379

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
47789130 .. 47789825
696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003379

Sequence Viewer

Length: 435 bp
ATGTGTACAAGTTACTACGACGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAGTGAACTTTGAGCAGATCAGTCAAGGTATGGCAGCAAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTCCAGCAGAGGAGGAAGTTGAGGTAGACCAGAAAGTTGTGCTAAAGGAAGATGGCTTGACCCTATTGGGACTTGTAGCTTCTGATGGTCAATGCTTGAAGCAAAAAGGTCATGTAGTTGCACTGGCTGGTGATGGCACCAATAATGCACCGGCATTGAAAGAAGCTGATATAGTCCTTTCTAGGGGAATTCAAGGCACAGAAGTTGCTAGAGAGAGCTCAGACATTGTGATCATGGATGATAAGTTTGCTTCAGTTGCCACAGTTTTGAGATGGAGAAGATGCGTTTACAATCAGATCTAG

Protein Analysis

145

Amino Acids

15.7

Weight (kDa)

4.8

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 2 - 71 2e-07 P-type ATPase, cytoplasmic domain N
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 3 cut(s) 232, 292, 326
AluBI AGCT 3 cut(s) 212, 299, 351
AluI AGCT 3 cut(s) 212, 299, 351
Alw21I GWGCWC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 92, 99
ApoI RAATTY 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 275
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 104, 111
BccI CCATC 4 cut(s) 179, 212, 260, 399
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BclI TGATCA 1 cut(s) 363
BfaI CTAG 3 cut(s) 315, 342, 433
BglII AGATCT 1 cut(s) 429
BisI GCNGC 2 cut(s) 93, 100
BlsI GCNGC 2 cut(s) 94, 101
BmiI GGNNCC 1 cut(s) 271
BmsI GCATC 3 cut(s) 98, 120, 404
BsaHI GRCGYC 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 118, 366
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 104, 111
BshNI GGYRCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 5
Bsp143I GATC 3 cut(s) 75, 363, 429
BspCNI CTCAG 2 cut(s) 117, 365
BspLI GGNNCC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 283
BsrGI TGTACA 1 cut(s) 5
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 283
BssMI GATC 3 cut(s) 75, 363, 429
BssNI GRCGYC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 397
BstACI GRCGYC 1 cut(s) 21
BstAUI TGTACA 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 104, 352
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 3 cut(s) 78, 366, 432
BstMBI GATC 3 cut(s) 75, 363, 429
BstMWI GCNNNNNNNGC 2 cut(s) 108, 389
BstV1I GCAGC 2 cut(s) 104, 111
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 283
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 245, 367
CviJI RGCY 6 cut(s) 102, 189, 212, 260, 299, 351
CviKI_1 RGCY 6 cut(s) 102, 189, 212, 260, 299, 351
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 2 cut(s) 104, 352
DpnI GATC 3 cut(s) 77, 365, 431
DpnII GATC 3 cut(s) 75, 363, 429
Ecl136II GAGCTC 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 2 cut(s) 248, 370
FaiI YATR 6 cut(s) 44, 89, 126, 246, 305, 368
FaqI GGGAC 1 cut(s) 216
FatI CATG 2 cut(s) 244, 366
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 93, 100
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 93, 100
FspBI CTAG 3 cut(s) 315, 342, 433
GluI GCNGC 2 cut(s) 93, 100
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 248, 370
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 4 cut(s) 6, 64, 160, 421
Hpy188I TCNGA 4 cut(s) 107, 217, 355, 429
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 4 cut(s) 6, 64, 160, 421
Hpy99I CGWCG 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4V TGCA 3 cut(s) 111, 254, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 389
HpyF3I CTNAG 2 cut(s) 104, 352
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 248, 370
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 3 cut(s) 75, 363, 429
LpnPI CCDG 6 cut(s) 12, 150, 176, 242, 246, 297
Lsp1109I GCAGC 2 cut(s) 104, 111
LweI GCATC 3 cut(s) 98, 120, 404
MaeI CTAG 3 cut(s) 315, 342, 433
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 77, 365, 431
MboI GATC 3 cut(s) 75, 363, 429
MboII GAAGA 2 cut(s) 194, 423
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 2 cut(s) 30, 321
MnlI CCTC 5 cut(s) 34, 113, 136, 139, 148
Mph1103I ATGCAT 1 cut(s) 113
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 108, 389
NdeII GATC 3 cut(s) 75, 363, 429
NlaIII CATG 2 cut(s) 248, 370
NlaIV GGNNCC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 113
PctI GAATGC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 94, 101
Psp124BI GAGCTC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 93, 100
Sau3AI GATC 3 cut(s) 75, 363, 429
SduI GDGCHC 1 cut(s) 353
SetI ASST 6 cut(s) 88, 159, 214, 244, 301, 353
SfaNI GCATC 3 cut(s) 98, 120, 404
Sse9I AATT 2 cut(s) 30, 321
SspMI CTAG 3 cut(s) 315, 342, 433
SstI GAGCTC 1 cut(s) 353
TaaI ACNGT 1 cut(s) 397
TasI AATT 2 cut(s) 30, 321
TatI WGTACW 1 cut(s) 5
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 261
TseI GCWGC 2 cut(s) 92, 99
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 1 cut(s) 261
XapI RAATTY 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 315, 342, 433
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.