Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

4627349 .. 4628407

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG024000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATATGGAGAAAGTGGTGAAGACTTGTAGCATTCTCCATGTCGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTCCTAGTGAAGAGAAAGGCAGATAACTCCAGCCATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGCAATGTGCACAAGTTACTACAATGCGTCTGGACTTGTTAAGGATATGGATGAGAATGCAAAAGGGAAGTTTGAGCATATTATTCAAGGTATGTCAGCTAGCAGCCTCAGATGCATAGCGTTTGCACATAAACCAGTTCCAGCAGAAGAGCGACTAAATGCAGACCAGAAATTTGTGTTAAAGGAAGATGGAATAACAACAAGAGAACTTATGGAGAAGCCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAGATAACTGTTCTCTTGATCTTGCAATTCAGAGGCAAAGCAATCTTCGGTGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGATATTTAATGAGTTCAATGCAAGAAAGCTAGAGAAGAAGAATGTCTTCAAGGGAATACACACCAACAAGTTGTTTATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATTGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAATCAAGTGTATACCTGTTCCTGAGAAACCCATATTCAGCTATCTGAAGATGAAGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

274

Amino Acids

31.05

Weight (kDa)

9.61

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	2 - 106	5.6e-16	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	116 - 257	2.1e-33	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	772
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	2 cut(s)	317, 677
AcuI	CTGAAG	1 cut(s)	632
AfaI	GTAC	2 cut(s)	117, 437
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	233, 523, 559, 592, 700
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	3 cut(s)	245, 571, 801
AluI	AGCT	3 cut(s)	245, 571, 801
Alw21I	GWGCWC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	632
AoxI	GGCC	1 cut(s)	746
ApaLI	GTGCAC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	131, 249
ApoI	RAATTY	2 cut(s)	317, 677
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	748
BbsI	GAAGAC	2 cut(s)	29, 580
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	143, 261
BccI	CCATC	2 cut(s)	329, 652
BfaI	CTAG	4 cut(s)	83, 146, 246, 572
BfoI	RGCGCY	1 cut(s)	389
BisI	GCNGC	2 cut(s)	132, 250
BlsI	GCNGC	2 cut(s)	133, 251
BmiI	GGNNCC	1 cut(s)	416
BmsI	GCATC	1 cut(s)	248
BmtI	GCTAGC	1 cut(s)	249
BpiI	GAAGAC	2 cut(s)	29, 580
BpmI	CTGGAG	1 cut(s)	91
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	411, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	3 cut(s)	125, 281, 371
Bse3DI	GCAATG	2 cut(s)	156, 627
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	2 cut(s)	156, 627
BseMII	CTCAG	2 cut(s)	268, 774
BseNI	ACTGG	3 cut(s)	125, 281, 371
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	143, 261
BshFI	GGCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	720
BsmI	GAATGC	2 cut(s)	33, 208
BsnI	GGCC	1 cut(s)	748
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	456, 516, 624
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	2 cut(s)	267, 775
BspLI	GGNNCC	1 cut(s)	416
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	632
BspQI	GCTCTTC	1 cut(s)	288
BspT104I	TTCGAA	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	156, 627
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	125, 281, 371
BssMI	GATC	3 cut(s)	456, 516, 624
BssNAI	GTATAC	1 cut(s)	773
Bst1107I	GTATAC	1 cut(s)	773
Bst4CI	ACNGT	2 cut(s)	435, 448
Bst6I	CTCTTC	2 cut(s)	83, 288
BstAUI	TGTACA	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	254, 783
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	3 cut(s)	459, 519, 627
BstMBI	GATC	3 cut(s)	456, 516, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	143, 261
BstV2I	GAAGAC	2 cut(s)	29, 580
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstZ17I	GTATAC	1 cut(s)	773
BsuRI	GGCC	1 cut(s)	748
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	5 cut(s)	118, 378, 431, 499, 639
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	388
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	116, 436
CviAII	CATG	3 cut(s)	41, 113, 406
CviJI	RGCY	9 cut(s)	50, 111, 245, 252, 367, 571, 748, 760, 801
CviKI_1	RGCY	9 cut(s)	50, 111, 245, 252, 367, 571, 748, 760, 801
CviQI	GTAC	2 cut(s)	116, 436
DdeI	CTNAG	2 cut(s)	254, 783
DpnI	GATC	3 cut(s)	458, 518, 626
DpnII	GATC	3 cut(s)	456, 516, 624
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	2 cut(s)	83, 288
EarI	CTCTTC	2 cut(s)	83, 288
Eco57I	CTGAAG	1 cut(s)	632
EcoT22I	ATGCAT	2 cut(s)	263, 725
FaeI	CATG	3 cut(s)	44, 116, 409
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	3 cut(s)	40, 112, 405
FblI	GTMKAC	1 cut(s)	772
Fnu4HI	GCNGC	2 cut(s)	132, 250
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	132, 250
FspBI	CTAG	4 cut(s)	83, 146, 246, 572
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	132, 250
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	748
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	44, 116, 409
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	118, 156, 773
Hpy188I	TCNGA	3 cut(s)	257, 470, 807
Hpy188III	TCNNGA	4 cut(s)	177, 454, 673, 782
Hpy8I	GTNNAC	3 cut(s)	118, 156, 773
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	2 cut(s)	435, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	254, 783
Hsp92II	CATG	3 cut(s)	44, 116, 409
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	3 cut(s)	456, 516, 624
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	2 cut(s)	143, 261
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	4 cut(s)	83, 146, 246, 572
MaeIII	GTNAC	2 cut(s)	161, 634
MalI	GATC	3 cut(s)	458, 518, 626
MboI	GATC	3 cut(s)	456, 516, 624
MfeI	CAATTG	2 cut(s)	639, 750
MhlI	GDGCHC	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	748
MluCI	AATT	7 cut(s)	55, 317, 464, 639, 677, 700, 750
MluNI	TGGCCA	1 cut(s)	748
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	8 cut(s)	263, 399, 405, 428, 435, 464, 658, 687
Mox20I	TGGCCA	1 cut(s)	748
Mph1103I	ATGCAT	2 cut(s)	263, 725
MroXI	GAANNNNTTC	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	748
MseI	TTAA	4 cut(s)	54, 186, 326, 549
MslI	CAYNNNNRTG	2 cut(s)	530, 632
Msp20I	TGGCCA	1 cut(s)	748
MunI	CAATTG	2 cut(s)	639, 750
Mva1269I	GAATGC	2 cut(s)	33, 208
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	3 cut(s)	456, 516, 624
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	44, 116, 409
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	634
NsiI	ATGCAT	2 cut(s)	263, 725
NspV	TTCGAA	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	2 cut(s)	33, 208
PdmI	GAANNNNTTC	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	133, 251
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	416
RsaI	GTAC	2 cut(s)	117, 437
RsaNI	GTAC	2 cut(s)	116, 436
RseI	CAYNNNNRTG	2 cut(s)	530, 632
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	54, 186, 326, 549
SatI	GCNGC	2 cut(s)	132, 250
Sau3AI	GATC	3 cut(s)	456, 516, 624
SchI	GAGTC	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	530, 632
SmlI	CTYRAG	2 cut(s)	426, 671
SmoI	CTYRAG	2 cut(s)	426, 671
Sse9I	AATT	7 cut(s)	55, 317, 464, 639, 677, 700, 750
SspMI	CTAG	4 cut(s)	83, 146, 246, 572
TaaI	ACNGT	2 cut(s)	435, 448
TaqI	TCGA	2 cut(s)	45, 59
TasI	AATT	7 cut(s)	55, 317, 464, 639, 677, 700, 750
TatI	WGTACW	1 cut(s)	115
Tru1I	TTAA	4 cut(s)	54, 186, 326, 549
Tru9I	TTAA	4 cut(s)	54, 186, 326, 549
TscAI	CASTG	5 cut(s)	125, 378, 438, 499, 639
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	2 cut(s)	131, 249
Tsp45I	GTSAC	1 cut(s)	634
TspRI	CASTG	5 cut(s)	125, 378, 438, 499, 639
VneI	GTGCAC	1 cut(s)	154
XapI	RAATTY	2 cut(s)	317, 677
XmiI	GTMKAC	1 cut(s)	772
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	4 cut(s)	83, 146, 246, 572
Zsp2I	ATGCAT	2 cut(s)	263, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.