MD13G1201600.v1.1

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
18090829 .. 18094187
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1201600.v1.1.491

Sequence Viewer

Length: 3039 bp
ATGAAGAAATCAGGAGGTTATATGATTATGAGATACTATAGGCGGCTTATTCTTACAGCAGCTTCCAAAATAAGCCATTTTTTTTCAGTTTACCAAACACCTAAAACCCTCACAGCTTTTTTTCATGAGTGTTTTTTTTTTAAGCACCTCACTCCCAAACCACCCCTATATATAACACTCTCAATAGTTGATTCTGTCACAACCAATCATACTTTGCCTTTAGCTTCCAATGAACTTTGTCACCTCAACAATGACTTCAAAATTGATAACAAATGCCTCACTCAACTCATCAAGGAGAAAAACCTACACCTTCTTCAAGAGCTCGAAGGCATCGATGGCGTTGTATCGGCTCTTCAAACCGACACTGAGCGTGGCATCGATGATGATGGTGACAATATTGCTCGCCGGCTGGAAGTATTTGGTTCAAACACTTACAAGAAGCCACCTTCAAAAAGCCTCTTCCATTTTTTATGGCAAGCTTCTAAGGATCTTACCATTGTCATCCTCTTAGGTTGCGCCGCGCTCTCACTTGGATTCGGCATAAAGCAGCATGGACTAAAAAATGGATGGTATGACGGGGGAAGCATCTCTGTCGCGGTTTTTCTTATCGTGGCTATATCCGCCTTTAGTGACTACAGGCAGAGCAAGCAGTTCCGGAAGTTGTCCAAATCAAGTGAGGACATTCCAATTGATATTGTGAGAGTGTTCTTGAAGACTGGAGATCAAGTTCCTGCTGATGGATTGTTCTTGCGTGGACATTCTTTGCGCGTGGACGAATCAAGCATGACGGGGGAGAGTGAGCATGTGGAAGTTAATGGCGGCCAGAATCCGTTCTTGTTTTCAGGAACCAAGGCGGTCGATGGACATGGTGAATTTCTTGTGGCTTCAGTCGGCATGAACTCGACGTGGGGCGAAATGATGAGCTTGATCAGCCGTGACACCAGTGATCAGCAGACGCCATTACAAGCGCGGCTAAGTAAACTAACCCCGCTGATGGCAAAGATTGGCTTGGGTGTTGCATTCATAGTTTTCGTGGTCTTGCTAGCGCGTTACTTCACAGGCAACACGAAGAACAAGAGTGAATTTGGTAAGTTTGAGGGCAGCAAGACGAAGATTGGAGATACGATGAATGCTGTGGTGGACATGGTCGCAGTTGCGGTTATTGTTGTTGTGATTGCAATTCCTGAAGGCTTCCCGTTGGCTGTCACTCTGACTCTCGCTTATTCGATGAAGAAGATGATGGCGGACCAAGCATTGGTAAGGAGGCTCTCTGCTTGCGAAACTATGGGACGTGCCACCGTGATTTGTACAGACAAGACGGGCACATTGACACTCAACGAGATGAAGGTTACAAAGTTTTGGCTTGGACAGGAATCTGTGGAAGATGATGTTGGTTATTCATCAATTTCTCATTATCTTCTCGATTTAATTCGAGAAGGAGTAGCGTTTAACACAACTGGTAGTGTTTATAGGCCTAGTTCAGGATCGGGATTTGAGTTTTCGGGCAGTCCTACTGAAAAAGCCATTCTTTCATGGGCTACTCTGGAGCTGCAGATGGACATGGAGGAATTGAAGAAGCAATGTGTCATTCAACATGTTGAAGTCTTCAATTCCCATAAGAAACGAAGTGGGGTTTTGATGAGAAGGAAGGCGAACAATACTACCCATGTGCATTGGAAAGTAGCTGCAGAAATGATACTAGAAATATGCTCGAGTTACTACGATGCGTCTGGTGTCATGAAAAATCTGAATGATGATGAAAGGTTGAAGTTTGAGGAGATTATTCAAGGCATGGCAGCAAGCAGTCTCCGATGCATTGCTTTTGCACACAAACAAGTTCAGGATAAGCACATTAATGACGAAAAGAAGTATGAAAAGCTTGAAGAAAGTAGCTCGATCCTCTTAGACGAAAAGCTCGAAGAAAGTAGCTTGATCCTCTTAGGATTGGTAGGTCTAAAGGATCCATGTCGGCCAGGAGTGAGGGAAGAAGTAGAAGCTTGCCAGTTAGCTGGGGTGCAGGTGAAAATGATCACTGGTGACAATGTTTTCACCGCTAAAGCAATAGCTAGCGAGTGCGGGATACTGCGGCCTGACCAGGAAGCCAAGGAAGTAGTGGTAGAAGGCGTAGAATTTCGCAACTACACGTCGGAGCAAAGAATGCAGAAAGTTGATGGAATTCACGTGATGGCAAGGTCTTCGCCATTTGATAAGCTTCTGATGGTGCAGTGCTTGAAACAGAAAGGCAATGTAGTAGCTGTGACAGGTGATGGCACGAATGATGCACCCGCACTGAAAGAAGCGGACATAGGACTCTCGATGGGGATTCAGGGAACGGAAGTGGCCAAGGAGAGCTCAGATATTATGGGGAAGAGGAGTTTATGCCAACATCCAAAAGTTCGTTCAATTCCAGCTGACAATAAATGTTGCAACTTTGTGGTCAACTTTGTGACAGCTGCCTCGGCTGGCGAAGTACCTTTAACAGCGGTCCAGTTGCTGTGGGTGAATTTGATTATGGACACAATGGCTGCTCTGGCTCTCGCCACCGATAAGCCTACCAAAGAGCTCATGGAAAAACCACCCGTGGGTCAGACGGATCCTGTGATCACCAACATCATGTGGAGGAACCTTCTAACCCAAGCTTTGTTCCAGATAGTTGTGCTCTTGATCTTGCAGTTCAAGGGCAGATCAATATTTGGTGTTAGTGAGAAGGTAAACAACACATTGATCTTCAATATATTTGTGCTTTGCCAAGTGTTTAATGAGTTTAATTCAAGAGATATGGAAAGGATCAATGTCTTCAAAGGGAGTCAGCGTAACAGGCTGTTTTGGGGCATCGTCGTCGTAACAATTGCATTTCAGGTGGTTATGGTGGAACTTCTGAACAAGTTTGCAAATACAGAGCGGTTAAGTTGGGGACAATGGGGTGCATGCTTTGGCATTGCAGCCATATCTTGGCCAATTTGTTGGGTTTTCAAGTTCATACCAGTTCCTGCTAAGCCAATATTCGGCTATGGAAGAGGGATAGCAAACGTGAGTTAG

Protein Analysis

1013

Amino Acids

112.2

Weight (kDa)

7.75

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 109 - 176 4.8e-14 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 235 - 310 9.9e-15 P-type ATPase actuator domain
Hydrolase PF00702 434 - 768 2.8e-13 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 475 - 658 8.6e-27 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 824 - 994 8.2e-47 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2008
Acc36I ACCTGC 1 cut(s) 2008
AccB7I CCANNNNNTGG 2 cut(s) 1255, 2952
AccBSI CCGCTC 1 cut(s) 2902
AccII CGCG 5 cut(s) 521, 596, 768, 970, 1048
AccIII TCCGGA 1 cut(s) 654
AclWI GGATC 9 cut(s) 495, 1492, 1891, 1927, 1955, 1968, 2588, 2601, 2795
AcoI YGGCCR 4 cut(s) 820, 1970, 2340, 2954
AcsI RAATTY 5 cut(s) 872, 1082, 2129, 2175, 2503
AcuI CTGAAG 2 cut(s) 870, 1206
AcvI CACGTG 1 cut(s) 2182
AcyI GRCGYC 1 cut(s) 956
AfaI GTAC 2 cut(s) 1309, 2472
AfiI CCNNNNNNNGG 7 cut(s) 737, 994, 1255, 1481, 2582, 2952, 3005
AflIII ACRYGT 2 cut(s) 1594, 2142
AjiI CACGTC 3 cut(s) 906, 1292, 2145
AjnI CCWGG 2 cut(s) 1972, 2094
AjuI GAANNNNNNNTTGG 4 cut(s) 1374, 1406, 2383, 2415
AloI GAACNNNNNNTCC 2 cut(s) 711, 743
Alw21I GWGCWC 4 cut(s) 324, 2354, 2565, 2661
Alw26I GTCTC 1 cut(s) 1811
AlwI GGATC 9 cut(s) 495, 1492, 1891, 1927, 1955, 1968, 2588, 2601, 2795
AlwNI CAGNNNCTG 2 cut(s) 2494, 2990
Ama87I CYCGRG 1 cut(s) 1711
Aor13HI TCCGGA 1 cut(s) 654
AoxI GGCC 6 cut(s) 820, 1472, 1970, 2087, 2340, 2954
ApeKI GCWGC 9 cut(s) 59, 547, 1101, 1549, 1685, 1796, 2453, 2525, 2942
ApoI RAATTY 5 cut(s) 872, 1082, 2129, 2175, 2503
AseI ATTAAT 1 cut(s) 1854
Asp700I GAANNNNTTC 1 cut(s) 830
AspLEI GCGC 5 cut(s) 518, 523, 768, 970, 1048
AspS9I GGNCC 2 cut(s) 1246, 2485
AsuHPI GGTGA 9 cut(s) 233, 401, 881, 2032, 2041, 2048, 2276, 2512, 2596
AsuNHI GCTAGC 2 cut(s) 1042, 2066
AvaI CYCGRG 1 cut(s) 1711
AvaII GGWCC 2 cut(s) 1246, 2485
BaeGI GKGCMC 1 cut(s) 1325
BalI TGGCCA 2 cut(s) 2342, 2956
BamHI GGATCC 2 cut(s) 1960, 2593
BanII GRGCYC 3 cut(s) 324, 2354, 2565
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
BbrPI CACGTG 1 cut(s) 2182
BbsI GAAGAC 4 cut(s) 719, 1597, 2187, 2788
Bbv12I GWGCWC 4 cut(s) 324, 2354, 2565, 2661
BbvI GCAGC 9 cut(s) 71, 559, 1113, 1536, 1672, 1808, 2440, 2512, 2954
BceAI ACGGC 1 cut(s) 918
BcgI CGANNNNNNTGC 6 cut(s) 574, 608, 2178, 2212, 2821, 2855
BciT130I CCWGG 2 cut(s) 1974, 2096
BciVI GTATCC 1 cut(s) 2073
BclI TGATCA 4 cut(s) 927, 946, 2028, 2601
BcoDI GTCTC 1 cut(s) 1811
BfaI CTAG 4 cut(s) 1043, 1476, 1700, 2067
BfmI CTRYAG 4 cut(s) 37, 634, 1550, 1686
BfuAI ACCTGC 1 cut(s) 2008
BfuI GTATCC 1 cut(s) 2073
BlpI GCTNAGC 1 cut(s) 2994
Bme1390I CCNGG 2 cut(s) 1974, 2096
Bme18I GGWCC 2 cut(s) 1246, 2485
BmeT110I CYCGRG 1 cut(s) 1711
BmgBI CACGTC 3 cut(s) 906, 1292, 2145
BmgT120I GGNCC 2 cut(s) 1246, 2485
BmiI GGNNCC 4 cut(s) 847, 1962, 2595, 2624
BmrFI CCNGG 2 cut(s) 1974, 2096
BmsI GCATC 7 cut(s) 339, 384, 594, 1714, 1802, 2269, 2841
BmtI GCTAGC 2 cut(s) 1046, 2070
BpiI GAAGAC 4 cut(s) 719, 1597, 2187, 2788
BpmI CTGGAG 2 cut(s) 738, 1565
Bpu1102I GCTNAGC 1 cut(s) 2994
Bsa29I ATCGAT 2 cut(s) 333, 378
BsaAI YACGTR 1 cut(s) 2182
BsaHI GRCGYC 1 cut(s) 956
BsaJI CCNNGG 5 cut(s) 849, 2103, 2343, 2457, 2580
BsaWI WCCGGW 1 cut(s) 654
BsaXI ACNNNNNCTCC 4 cut(s) 711, 741, 2797, 2827
Bsc4I CCNNNNNNNGG 7 cut(s) 737, 994, 1255, 1481, 2582, 2952, 3005
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 7 cut(s) 721, 942, 1462, 2002, 2038, 2488, 2984
Bse3DI GCAATG 4 cut(s) 1586, 1815, 2251, 2937
BseAI TCCGGA 1 cut(s) 654
BseBI CCWGG 2 cut(s) 1974, 2096
BseCI ATCGAT 2 cut(s) 333, 378
BseDI CCNNGG 5 cut(s) 849, 2103, 2343, 2457, 2580
BseGI GGATG 3 cut(s) 501, 572, 2386
BseLI CCNNNNNNNGG 7 cut(s) 737, 994, 1255, 1481, 2582, 2952, 3005
BseMI GCAATG 4 cut(s) 1586, 1815, 2251, 2937
BseMII CTCAG 2 cut(s) 357, 2367
BseNI ACTGG 7 cut(s) 721, 942, 1462, 2002, 2038, 2488, 2984
BseRI GAGGAG 2 cut(s) 1790, 2386
BseSI GKGCMC 1 cut(s) 1325
BseXI GCAGC 9 cut(s) 71, 559, 1113, 1536, 1672, 1808, 2440, 2512, 2954
BseYI CCCAGC 1 cut(s) 2009
BsgI GTGCAG 2 cut(s) 2036, 2243
Bsh1236I CGCG 5 cut(s) 521, 596, 768, 970, 1048
Bsh1285I CGRYCG 1 cut(s) 858
BshFI GGCC 6 cut(s) 822, 1474, 1972, 2089, 2342, 2956
BshVI ATCGAT 2 cut(s) 333, 378
BsiEI CGRYCG 1 cut(s) 858
BsiHKAI GWGCWC 4 cut(s) 324, 2354, 2565, 2661
BsiHKCI CYCGRG 1 cut(s) 1711
BsiSI CCGG 2 cut(s) 406, 655
BslFI GGGAC 2 cut(s) 1302, 2928
BslI CCNNNNNNNGG 7 cut(s) 737, 994, 1255, 1481, 2582, 2952, 3005
BsmAI GTCTC 1 cut(s) 1811
BsmFI GGGAC 2 cut(s) 1302, 2928
BsmI GAATGC 3 cut(s) 1019, 1135, 2163
BsnI GGCC 6 cut(s) 822, 1474, 1972, 2089, 2342, 2956
BsoBI CYCGRG 1 cut(s) 1711
Bsp1286I GDGCHC 5 cut(s) 324, 1325, 2354, 2565, 2661
Bsp13I TCCGGA 1 cut(s) 654
Bsp1407I TGTACA 1 cut(s) 1307
Bsp1720I GCTNAGC 1 cut(s) 2994
BspANI GGCC 6 cut(s) 822, 1474, 1972, 2089, 2342, 2956
BspCNI CTCAG 2 cut(s) 358, 2366
BspDI ATCGAT 2 cut(s) 333, 378
BspEI TCCGGA 1 cut(s) 654
BspFNI CGCG 5 cut(s) 521, 596, 768, 970, 1048
BspHI TCATGA 2 cut(s) 124, 1737
BspLI GGNNCC 4 cut(s) 847, 1962, 2595, 2624
BspMAI CTGCAG 2 cut(s) 1554, 1690
BspMI ACCTGC 1 cut(s) 2008
BspOI GCTAGC 2 cut(s) 1046, 2070
BspPI GGATC 9 cut(s) 495, 1492, 1891, 1927, 1955, 1968, 2588, 2601, 2795
BspQI GCTCTTC 1 cut(s) 357
BsrBI CCGCTC 1 cut(s) 2902
BsrDI GCAATG 4 cut(s) 1586, 1815, 2251, 2937
BsrFI RCCGGY 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 1307
BsrI ACTGG 7 cut(s) 721, 942, 1462, 2002, 2038, 2488, 2984
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 5 cut(s) 849, 2103, 2343, 2457, 2580
BssNI GRCGYC 1 cut(s) 956
BssT1I CCWWGG 3 cut(s) 849, 2103, 2343
Bst2UI CCWGG 2 cut(s) 1974, 2096
Bst4CI ACNGT 1 cut(s) 1300
Bst6I CTCTTC 4 cut(s) 357, 464, 2363, 3010
BstACI GRCGYC 1 cut(s) 956
BstAPI GCANNNNNTGC 1 cut(s) 2158
BstAUI TGTACA 1 cut(s) 1307
BstBAI YACGTR 1 cut(s) 2182
BstDEI CTNAG 8 cut(s) 366, 483, 508, 974, 1903, 1939, 2353, 2994
BstDSI CCRYGG 1 cut(s) 2580
BstENI CCTNNNNNAGG 1 cut(s) 1479
BstF5I GGATG 3 cut(s) 501, 572, 2386
BstFNI CGCG 5 cut(s) 521, 596, 768, 970, 1048
BstHHI GCGC 5 cut(s) 518, 523, 768, 970, 1048
BstMAI GTCTC 1 cut(s) 1811
BstMCI CGRYCG 1 cut(s) 858
BstMWI GCNNNNNNNGC 9 cut(s) 336, 620, 646, 930, 1250, 2158, 2459, 2531, 2818
BstNI CCWGG 2 cut(s) 1974, 2096
BstNSI RCATGY 3 cut(s) 806, 1598, 2931
BstSCI CCNGG 2 cut(s) 1972, 2094
BstSFI CTRYAG 4 cut(s) 37, 634, 1550, 1686
BstSLI GKGCMC 1 cut(s) 1325
BstUI CGCG 5 cut(s) 521, 596, 768, 970, 1048
BstV1I GCAGC 9 cut(s) 71, 559, 1113, 1536, 1672, 1808, 2440, 2512, 2954
BstV2I GAAGAC 4 cut(s) 719, 1597, 2187, 2788
BstX2I RGATCY 3 cut(s) 487, 1960, 2593
BstXI CCANNNNNNTGG 2 cut(s) 2009, 2964
BstYI RGATCY 3 cut(s) 487, 1960, 2593
Bsu15I ATCGAT 2 cut(s) 333, 378
BsuI GTATCC 1 cut(s) 2073
BsuRI GGCC 6 cut(s) 822, 1474, 1972, 2089, 2342, 2956
BsuTUI ATCGAT 2 cut(s) 333, 378
BtgI CCRYGG 1 cut(s) 2580
BtrI CACGTC 3 cut(s) 906, 1292, 2145
BtsCI GGATG 3 cut(s) 501, 572, 2386
BtsI GCAGTG 1 cut(s) 2231
BtsIMutI CAGTG 5 cut(s) 363, 949, 2031, 2231, 2288
BveI ACCTGC 1 cut(s) 2008
CaiI CAGNNNCTG 2 cut(s) 2494, 2990
CciI TCATGA 2 cut(s) 124, 1737
CfoI GCGC 5 cut(s) 518, 523, 768, 970, 1048
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 1246, 2485
ClaI ATCGAT 2 cut(s) 333, 378
CseI GACGC 2 cut(s) 964, 1716
Csp6I GTAC 2 cut(s) 1308, 2471
CviQI GTAC 2 cut(s) 1308, 2471
DdeI CTNAG 8 cut(s) 366, 483, 508, 974, 1903, 1939, 2353, 2994
EaeI YGGCCR 4 cut(s) 820, 1970, 2340, 2954
Eam1104I CTCTTC 4 cut(s) 357, 464, 2363, 3010
EarI CTCTTC 4 cut(s) 357, 464, 2363, 3010
EciI GGCGGA 2 cut(s) 610, 1259
Ecl136II GAGCTC 3 cut(s) 322, 2352, 2563
Eco130I CCWWGG 3 cut(s) 849, 2103, 2343
Eco147I AGGCCT 1 cut(s) 1474
Eco24I GRGCYC 3 cut(s) 324, 2354, 2565
Eco47I GGWCC 2 cut(s) 1246, 2485
Eco53kI GAGCTC 3 cut(s) 322, 2352, 2563
Eco57I CTGAAG 2 cut(s) 870, 1206
Eco72I CACGTG 1 cut(s) 2182
Eco88I CYCGRG 1 cut(s) 1711
EcoICRI GAGCTC 3 cut(s) 322, 2352, 2563
EcoNI CCTNNNNNAGG 1 cut(s) 1479
EcoRI GAATTC 1 cut(s) 2175
EcoRII CCWGG 2 cut(s) 1972, 2094
EcoT14I CCWWGG 3 cut(s) 849, 2103, 2343
EcoT22I ATGCAT 1 cut(s) 1817
EcoT38I GRGCYC 3 cut(s) 324, 2354, 2565
ErhI CCWWGG 3 cut(s) 849, 2103, 2343
FalI AAGNNNNNCTT 4 cut(s) 992, 1024, 1512, 1544
FaqI GGGAC 2 cut(s) 1302, 2928
FauI CCCGC 3 cut(s) 996, 2069, 2293
FbaI TGATCA 4 cut(s) 927, 946, 2028, 2601
FokI GGATG 3 cut(s) 488, 579, 2373
FriOI GRGCYC 3 cut(s) 324, 2354, 2565
FspBI CTAG 4 cut(s) 1043, 1476, 1700, 2067
GlaI GCGC 5 cut(s) 517, 522, 767, 969, 1047
GsaI CCCAGC 1 cut(s) 2013
GsuI CTGGAG 2 cut(s) 738, 1565
HaeIII GGCC 6 cut(s) 822, 1474, 1972, 2089, 2342, 2956
HapII CCGG 2 cut(s) 406, 655
HgaI GACGC 2 cut(s) 964, 1716
HhaI GCGC 5 cut(s) 518, 523, 768, 970, 1048
Hin1I GRCGYC 1 cut(s) 956
Hin6I GCGC 5 cut(s) 516, 521, 766, 968, 1046
HinP1I GCGC 5 cut(s) 516, 521, 766, 968, 1046
HincII GTYRAC 1 cut(s) 2440
HindII GTYRAC 1 cut(s) 2440
HindIII AAGCTT 5 cut(s) 477, 1877, 1995, 2210, 2637
HinfI GANTC 9 cut(s) 191, 534, 776, 826, 1213, 1373, 2310, 2323, 2806
HpaII CCGG 2 cut(s) 406, 655
HphI GGTGA 9 cut(s) 233, 401, 881, 2032, 2041, 2048, 2276, 2512, 2596
Hpy166II GTNNAC 7 cut(s) 91, 755, 772, 980, 1141, 2440, 2713
Hpy188I TCNGA 8 cut(s) 1212, 1749, 1811, 2149, 2217, 2356, 2589, 2880
Hpy8I GTNNAC 7 cut(s) 91, 755, 772, 980, 1141, 2440, 2713
Hpy99I CGWCG 4 cut(s) 907, 2149, 2840, 2843
HpyCH4III ACNGT 1 cut(s) 1300
HpyCH4IV ACGT 5 cut(s) 905, 1291, 2144, 2181, 3030
HpyF10VI GCNNNNNNNGC 9 cut(s) 336, 620, 646, 930, 1250, 2158, 2459, 2531, 2818
HpyF3I CTNAG 8 cut(s) 366, 483, 508, 974, 1903, 1939, 2353, 2994
HpySE526I ACGT 5 cut(s) 905, 1291, 2144, 2181, 3030
Hsp92I GRCGYC 1 cut(s) 956
HspAI GCGC 5 cut(s) 516, 521, 766, 968, 1046
Kpn2I TCCGGA 1 cut(s) 654
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Ksp22I TGATCA 4 cut(s) 927, 946, 2028, 2601
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 1546, 2149
Lsp1109I GCAGC 9 cut(s) 71, 559, 1113, 1536, 1672, 1808, 2440, 2512, 2954
LweI GCATC 7 cut(s) 339, 384, 594, 1714, 1802, 2269, 2841
MaeI CTAG 4 cut(s) 1043, 1476, 1700, 2067
MaeII ACGT 5 cut(s) 905, 1291, 2144, 2181, 3030
MbiI CCGCTC 1 cut(s) 2902
MfeI CAATTG 2 cut(s) 687, 2847
MflI RGATCY 3 cut(s) 487, 1960, 2593
MhlI GDGCHC 5 cut(s) 324, 1325, 2354, 2565, 2661
MlsI TGGCCA 2 cut(s) 2342, 2956
MluNI TGGCCA 2 cut(s) 2342, 2956
MlyI GAGTC 3 cut(s) 1207, 2304, 2815
MmeI TCCRAC 1 cut(s) 2127
Mox20I TGGCCA 2 cut(s) 2342, 2956
Mph1103I ATGCAT 1 cut(s) 1817
MroI TCCGGA 1 cut(s) 654
MroNI GCCGGC 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 830
MscI TGGCCA 2 cut(s) 2342, 2956
MseI TTAA 9 cut(s) 141, 813, 1427, 1449, 1854, 2477, 2757, 2766, 2906
MslI CAYNNNNRTG 1 cut(s) 1854
Msp20I TGGCCA 2 cut(s) 2342, 2956
MspA1I CMGCKG 4 cut(s) 991, 2411, 2453, 2483
MspI CCGG 2 cut(s) 406, 655
MspR9I CCNGG 2 cut(s) 1974, 2096
MteI GCGCNGCGC 1 cut(s) 519
MunI CAATTG 2 cut(s) 687, 2847
Mva1269I GAATGC 3 cut(s) 1019, 1135, 2163
MvaI CCWGG 2 cut(s) 1974, 2096
MvnI CGCG 5 cut(s) 521, 596, 768, 970, 1048
MwoI GCNNNNNNNGC 9 cut(s) 336, 620, 646, 930, 1250, 2158, 2459, 2531, 2818
NaeI GCCGGC 1 cut(s) 407
NgoMIV GCCGGC 1 cut(s) 405
NheI GCTAGC 2 cut(s) 1042, 2066
NlaIV GGNNCC 4 cut(s) 847, 1962, 2595, 2624
NmeAIII GCCGAG 1 cut(s) 2438
NmuCI GTSAC 9 cut(s) 196, 239, 389, 629, 935, 1204, 2036, 2257, 2446
NsiI ATGCAT 1 cut(s) 1817
NspI RCATGY 3 cut(s) 806, 1598, 2931
PaeI GCATGC 1 cut(s) 2931
PaeR7I CTCGAG 1 cut(s) 1711
PagI TCATGA 2 cut(s) 124, 1737
PaqCI CACCTGC 1 cut(s) 2008
PceI AGGCCT 1 cut(s) 1474
PciI ACATGT 1 cut(s) 1594
PciSI GCTCTTC 1 cut(s) 357
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 1914
PctI GAATGC 3 cut(s) 1019, 1135, 2163
PdiI GCCGGC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 6 cut(s) 191, 534, 776, 826, 1373, 2323
PflFI GACNNNGTC 1 cut(s) 1145
PflMI CCANNNNNTGG 2 cut(s) 1255, 2952
PleI GAGTC 3 cut(s) 1207, 2304, 2814
PmaCI CACGTG 1 cut(s) 2182
PmlI CACGTG 1 cut(s) 2182
PpsI GAGTC 3 cut(s) 1207, 2304, 2814
Ppu21I YACGTR 1 cut(s) 2182
PscI ACATGT 1 cut(s) 1594
PshBI ATTAAT 1 cut(s) 1854
Psp124BI GAGCTC 3 cut(s) 324, 2354, 2565
Psp6I CCWGG 2 cut(s) 1972, 2094
PspCI CACGTG 1 cut(s) 2182
PspFI CCCAGC 1 cut(s) 2009
PspGI CCWGG 2 cut(s) 1972, 2094
PspN4I GGNNCC 4 cut(s) 847, 1962, 2595, 2624
PspPI GGNCC 2 cut(s) 1246, 2485
PspXI VCTCGAGB 1 cut(s) 1711
PstI CTGCAG 2 cut(s) 1554, 1690
PstNI CAGNNNCTG 2 cut(s) 2494, 2990
PsuI RGATCY 3 cut(s) 487, 1960, 2593
PsyI GACNNNGTC 1 cut(s) 1145
PvuII CAGCTG 2 cut(s) 2411, 2453
RsaI GTAC 2 cut(s) 1309, 2472
RsaNI GTAC 2 cut(s) 1308, 2471
RseI CAYNNNNRTG 1 cut(s) 1854
SacI GAGCTC 3 cut(s) 324, 2354, 2565
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 9 cut(s) 141, 813, 1427, 1449, 1854, 2477, 2757, 2766, 2906
Sau96I GGNCC 2 cut(s) 1246, 2485
SchI GAGTC 3 cut(s) 1207, 2304, 2815
ScrFI CCNGG 2 cut(s) 1974, 2096
SduI GDGCHC 5 cut(s) 324, 1325, 2354, 2565, 2661
SfaNI GCATC 7 cut(s) 339, 384, 594, 1714, 1802, 2269, 2841
SfcI CTRYAG 4 cut(s) 37, 634, 1550, 1686
Sfr274I CTCGAG 1 cut(s) 1711
SinI GGWCC 2 cut(s) 1246, 2485
SlaI CTCGAG 1 cut(s) 1711
SmiMI CAYNNNNRTG 1 cut(s) 1854
SmlI CTYRAG 1 cut(s) 1711
SmoI CTYRAG 1 cut(s) 1711
SphI GCATGC 1 cut(s) 2931
SseBI AGGCCT 1 cut(s) 1474
SspI AATATT 3 cut(s) 397, 2691, 3003
SspMI CTAG 4 cut(s) 1043, 1476, 1700, 2067
SstI GAGCTC 3 cut(s) 324, 2354, 2565
StuI AGGCCT 1 cut(s) 1474
StyD4I CCNGG 2 cut(s) 1972, 2094
StyI CCWWGG 3 cut(s) 849, 2103, 2343
TaaI ACNGT 1 cut(s) 1300
TaiI ACGT 5 cut(s) 908, 1294, 2147, 2184, 3033
TatI WGTACW 1 cut(s) 1307
TauI GCSGC 5 cut(s) 46, 521, 822, 973, 2089
TfiI GAWTC 6 cut(s) 191, 534, 776, 826, 1373, 2323
Tru1I TTAA 9 cut(s) 141, 813, 1427, 1449, 1854, 2477, 2757, 2766, 2906
Tru9I TTAA 9 cut(s) 141, 813, 1427, 1449, 1854, 2477, 2757, 2766, 2906
TscAI CASTG 5 cut(s) 370, 949, 2038, 2231, 2295
TseFI GTSAC 9 cut(s) 196, 239, 389, 629, 935, 1204, 2036, 2257, 2446
TseI GCWGC 9 cut(s) 59, 547, 1101, 1549, 1685, 1796, 2453, 2525, 2942
Tsp45I GTSAC 9 cut(s) 196, 239, 389, 629, 935, 1204, 2036, 2257, 2446
TspGWI ACGGA 3 cut(s) 819, 2348, 2606
TspRI CASTG 5 cut(s) 370, 949, 2038, 2231, 2295
Tth111I GACNNNGTC 1 cut(s) 1145
Van91I CCANNNNNTGG 2 cut(s) 1255, 2952
VpaK11BI GGWCC 2 cut(s) 1246, 2485
VspI ATTAAT 1 cut(s) 1854
XagI CCTNNNNNAGG 1 cut(s) 1479
XapI RAATTY 5 cut(s) 872, 1082, 2129, 2175, 2503
XceI RCATGY 3 cut(s) 806, 1598, 2931
XcmI CCANNNNNNNNNTGG 2 cut(s) 2110, 2563
XhoI CTCGAG 1 cut(s) 1711
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 4 cut(s) 1043, 1476, 1700, 2067
Zsp2I ATGCAT 1 cut(s) 1817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.