Rmu_sc0001949.1_g000020

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001949.1
Physical Location & Seq
Reverse (-)
74245 .. 77145
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001949.1_g000020.1.cds

Sequence Viewer

Length: 2901 bp
atgagtagcagcactgtaagtgcaaatctgaatctcgttgagctcaacaaggggttcaaaatcgataacaaatgcctcactcaactcatgaaggagaagaatctaaacctgcttcaagagctcggaggcactgatggtattgcgtcagctcttgaagccgacagtgagcgtggagtccatgatgaaaaggacaacattgctcgccaccgtgaagcatttggctcaaacacgtatagcaaaccaccttcgaaaagccttttccattttatgtggcaagcctctaaggacctcaccattgtcattctcctaggctgcgctgcgctttcgcttggctttggcatcaagcaagatggactcaaagaaggttggtatgatggtggaagcatcttcattgctgttgttctcatcgttgctatatctgcctttagtgactacagacagaacaagcagttcgaaaagctgtccaaagcaagcgatgatatcccaatagatgttgtaagaggtggaagaagacagaaggtttccatctttgaaattgtagttggagatgttgtgtttctgaagattggagaccaagttcctgctgatggattgttcttatatggacattcgttgcgagtagacgaatcaagcatgacaggggagagtgaccatgtggaggttgattgcagcaacaatccattcttgtattctggaaccaaagtggttgatggatacggccgaatgcttgtgacttcagtagggatgaactcaagttggggccaaatgatgagcttgatcagccacgaaaacaatgagcagacacctttacaagaaaagcttagtaagttcactccattacttgctaagattggcttggcagttgcattcatggtctttgtggtgctgttagttcgttacttcacaggaaacacaaagagtgagagtggaagttttggtaagttcaagggtggcaagacgaggattgatgatgtggccaatgccttgttggatatggtagcagttgctgtcattattgttgtgattgcaattccagaagggtttccactggctgtgactctaactcttgcttactcgatgaagaaaatgatggcggatcatgcattggttcggaggctctcagcttgcgagactatgggatgtgccaccataatctgtacagacaaaacaggtactctcactctcaacgagatgaaggttgtgaagttttggattggaaaggaaagtgtggaagatggtgctgcttcatcaattcctgttagtattcttcatttgatccgagaaggggtagcgttcaacacaacaggaagtgtttacaagcctaactcaggatcagggtttgagttttccggcagtcctactgaaaaggccattctttcatgggctgcagttgagctgaacatggacatagatgagttgaaacagaactgtaccatccaacatgtagaggccttcaattcacagaagaagcgaagcggggttttggtgggaaggaaggcagacaatacagtccatgtgcattggaaaggagctgcagagatgatagtagacatgtgctcgagttactacgatgcctctggtgttaccaatgatcttggtgaagatgaaaggatgcagttcaagaaaattgttcaaggtatggcagcaagcagtctcagatgcattgcttttgcacacaaacaaattcaagaaagcaagcacaatgatgaaaatggtagcaagatgctggaagagcacaacttgatcctattaggcctggtgggtttgaaggacccatgcaggccaggagtgagagaggcggtagaagcttgccagttcgccggggttcaagtaaaattgatcaccggtgacaatgtgtttaccgctaaagccatagctaccgagtgtgggatactgaggcctaatgaccaggaaatggtaagggaagctgtggtagaaggtgaagaatttcgaaactacacaccagagcagagaatgcagagagttgatggaattcgtgtgatggcaaggtcttctccatttgataagcttcttatggtgcagtgcttaaaacagaaagggcatgtggttgctgtgaccggtgatggcacaaatgatgcaccagcgctgaaggaagccaatataggactctcgatggggattcaaggcaccgaagtggccaaggagagttcagacattgtgatcctagatgacaactttgctactgttgtcactgttttaaggtggggaaggggtgtgtatgccaacattcagaagtttgtgcaattccagctcacaatcaatgttgccactcttgtagtcaactttgtggcagcagcttcagctggtgaagtgcccttaacagcagtccagttactgtgggtgaatctgataatggacacaatggctgctcttgctcttgccacagataagccaaccaaagagctcatggaacggccaccagttcttcgatctgagcctgtgatcacatacctcatgtggaggaacgttttcgctcaagctctgttccaggtagctgtgctcttgatcttgcagtttaaaggcagatcaatctttggtgttagtgagaaggtaaacaacactatgatattcaacgtctttgtcttgtgccaagtgtttaatgaattcaatgcaaggagtgttgagaagaggaatgtcctcaaagggagtcacaagaacaaattgttttgggcgatcgttggtataaccattatagttcaggtggttatggtggagtttctgaagaagtttgcagatacagagaggttaagttggggtcaatggggtgcttgcattggaatttcagccatatcttgcccaatcagttgggttgtcaagtgtgtaccagttcctgcgaagccgatattcggttatctaaagcataatacaaccacaccatag

Protein Analysis

966

Amino Acids

105.9

Weight (kDa)

6.8

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1508
Acc36I ACCTGC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 2147
AccB7I CCANNNNNTGG 1 cut(s) 1915
AccI GTMKAC 2 cut(s) 621, 1548
AciI CCGC 4 cut(s) 1094, 1476, 1799, 1863
AclI AACGTT 1 cut(s) 2487
AclWI GGATC 5 cut(s) 1104, 1270, 1339, 1738, 2176
AcoI YGGCCR 4 cut(s) 718, 975, 2157, 2435
AcsI RAATTY 5 cut(s) 1683, 1946, 1992, 2624, 2799
AcuI CTGAAG 5 cut(s) 581, 720, 2129, 2304, 2762
AfaI GTAC 4 cut(s) 1159, 1174, 1432, 2844
AfeI AGCGCT 1 cut(s) 2106
AfiI CCNNNNNNNGG 7 cut(s) 587, 658, 1285, 1328, 1887, 1915, 2867
AflIII ACRYGT 3 cut(s) 228, 1441, 1551
AgeI ACCGGT 2 cut(s) 1844, 2078
AjnI CCWGG 4 cut(s) 1755, 1783, 1908, 2508
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AleI CACNNNNGTG 1 cut(s) 2153
AloI GAACNNNNNNTCC 2 cut(s) 561, 593
Alw21I GWGCWC 6 cut(s) 45, 123, 1559, 1737, 2427, 2523
Alw26I GTCTC 3 cut(s) 564, 1124, 1658
AlwI GGATC 5 cut(s) 1104, 1270, 1339, 1738, 2176
AlwNI CAGNNNCTG 3 cut(s) 1007, 2356, 2852
Ama87I CYCGRG 1 cut(s) 1558
Aor51HI AGCGCT 1 cut(s) 2106
ApoI RAATTY 5 cut(s) 1683, 1946, 1992, 2624, 2799
AsiGI ACCGGT 2 cut(s) 1844, 2078
Asp700I GAANNNNTTC 3 cut(s) 1041, 1947, 2489
AspA2I CCTAGG 1 cut(s) 307
AspLEI GCGC 3 cut(s) 317, 322, 2107
AspS9I GGNCC 3 cut(s) 286, 760, 1771
AsuC2I CCSGG 1 cut(s) 1822
AsuHPI GGTGA 8 cut(s) 283, 1610, 1834, 1859, 1952, 2093, 2339, 2374
AsuII TTCGAA 3 cut(s) 248, 453, 1951
AvaI CYCGRG 1 cut(s) 1558
AvaII GGWCC 2 cut(s) 286, 1771
AvrII CCTAGG 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 2337
BalI TGGCCA 2 cut(s) 977, 2159
BanI GGYRCC 1 cut(s) 2147
BanII GRGCYC 3 cut(s) 45, 123, 2427
BbsI GAAGAC 2 cut(s) 517, 2004
Bbv12I GWGCWC 6 cut(s) 45, 123, 1559, 1737, 2427, 2523
BceAI ACGGC 2 cut(s) 733, 2450
BciT130I CCWGG 4 cut(s) 1757, 1785, 1910, 2510
BciVI GTATCC 2 cut(s) 707, 1884
BclI TGATCA 3 cut(s) 777, 1839, 2463
BcnI CCSGG 1 cut(s) 1822
BcoDI GTCTC 3 cut(s) 564, 1124, 1658
BfaI CTAG 2 cut(s) 308, 2186
BfmI CTRYAG 3 cut(s) 433, 1386, 1533
BfoI RGCGCY 1 cut(s) 2108
BfuAI ACCTGC 1 cut(s) 117
BfuI GTATCC 2 cut(s) 707, 1884
BlnI CCTAGG 1 cut(s) 307
Bme1390I CCNGG 5 cut(s) 1757, 1785, 1822, 1910, 2510
Bme18I GGWCC 2 cut(s) 286, 1771
BmeT110I CYCGRG 1 cut(s) 1558
BmgT120I GGNCC 3 cut(s) 286, 760, 1771
BmiI GGNNCC 4 cut(s) 697, 761, 1773, 2149
BmrFI CCNGG 5 cut(s) 1757, 1785, 1822, 1910, 2510
BmsI GCATC 7 cut(s) 348, 393, 1561, 1602, 1649, 1713, 2086
BpiI GAAGAC 2 cut(s) 517, 2004
Bpu14I TTCGAA 3 cut(s) 248, 453, 1951
BpuEI CTTGAG 2 cut(s) 736, 2481
BpuMI CCSGG 1 cut(s) 1822
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 307, 1821, 2160
BsaWI WCCGGW 2 cut(s) 1844, 2078
BsaXI ACNNNNNCTCC 4 cut(s) 537, 561, 567, 591
Bsc4I CCNNNNNNNGG 7 cut(s) 587, 658, 1285, 1328, 1887, 1915, 2867
Bse118I RCCGGY 2 cut(s) 1844, 2078
Bse1I ACTGG 5 cut(s) 1053, 1813, 2350, 2441, 2846
Bse3DI GCAATG 3 cut(s) 195, 390, 1662
BseBI CCWGG 4 cut(s) 1757, 1785, 1910, 2510
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 307, 1821, 2160
BseGI GGATG 4 cut(s) 750, 1145, 1434, 1617
BseLI CCNNNNNNNGG 7 cut(s) 587, 658, 1285, 1328, 1887, 1915, 2867
BseMI GCAATG 3 cut(s) 195, 390, 1662
BseMII CTCAG 5 cut(s) 1134, 1341, 1669, 1886, 2445
BseNI ACTGG 5 cut(s) 1053, 1813, 2350, 2441, 2846
BseSI GKGCMC 1 cut(s) 2337
BseX3I CGGCCG 1 cut(s) 718
BsgI GTGCAG 1 cut(s) 2060
Bsh1285I CGRYCG 2 cut(s) 721, 2697
BshNI GGYRCC 1 cut(s) 2147
BshTI ACCGGT 2 cut(s) 1844, 2078
BshVI ATCGAT 1 cut(s) 63
BsiEI CGRYCG 2 cut(s) 721, 2697
BsiHKAI GWGCWC 6 cut(s) 45, 123, 1559, 1737, 2427, 2523
BsiHKCI CYCGRG 1 cut(s) 1558
BsiSI CCGG 4 cut(s) 1350, 1821, 1845, 2079
BslI CCNNNNNNNGG 7 cut(s) 587, 658, 1285, 1328, 1887, 1915, 2867
BsmAI GTCTC 3 cut(s) 564, 1124, 1658
BsmI GAATGC 3 cut(s) 729, 866, 1980
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 1558
Bsp119I TTCGAA 3 cut(s) 248, 453, 1951
Bsp1286I GDGCHC 7 cut(s) 45, 123, 1559, 1737, 2337, 2427, 2523
Bsp1407I TGTACA 1 cut(s) 1157
BspACI CCGC 4 cut(s) 1094, 1476, 1799, 1863
BspCNI CTCAG 5 cut(s) 1133, 1340, 1668, 1887, 2446
BspDI ATCGAT 1 cut(s) 63
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 697, 761, 1773, 2149
BspMAI CTGCAG 2 cut(s) 1390, 1537
BspMI ACCTGC 1 cut(s) 117
BspPI GGATC 5 cut(s) 1104, 1270, 1339, 1738, 2176
BspQI GCTCTTC 1 cut(s) 1725
BspT104I TTCGAA 3 cut(s) 248, 453, 1951
BspT107I GGYRCC 1 cut(s) 2147
BspTNI GGTCTC 1 cut(s) 564
BsrDI GCAATG 3 cut(s) 195, 390, 1662
BsrFI RCCGGY 2 cut(s) 1844, 2078
BsrGI TGTACA 1 cut(s) 1157
BsrI ACTGG 5 cut(s) 1053, 1813, 2350, 2441, 2846
BssAI RCCGGY 2 cut(s) 1844, 2078
BssECI CCNNGG 3 cut(s) 307, 1821, 2160
BssT1I CCWWGG 2 cut(s) 307, 2160
Bst2UI CCWGG 4 cut(s) 1757, 1785, 1910, 2510
Bst4CI ACNGT 8 cut(s) 16, 164, 209, 1430, 1510, 2206, 2215, 2358
Bst6I CTCTTC 2 cut(s) 1725, 2642
BstAPI GCANNNNNTGC 1 cut(s) 1975
BstAUI TGTACA 1 cut(s) 1157
BstBAI YACGTR 1 cut(s) 231
BstBI TTCGAA 3 cut(s) 248, 453, 1951
BstC8I GCNNGC 9 cut(s) 202, 276, 472, 1126, 1648, 1697, 1781, 1810, 2791
BstDEI CTNAG 8 cut(s) 282, 821, 846, 1120, 1327, 1655, 1895, 2454
BstENI CCTNNNNNAGG 1 cut(s) 1326
BstF5I GGATG 4 cut(s) 750, 1145, 1434, 1617
BstH2I RGCGCY 1 cut(s) 2108
BstHHI GCGC 3 cut(s) 317, 322, 2107
BstMAI GTCTC 3 cut(s) 564, 1124, 1658
BstMCI CGRYCG 2 cut(s) 721, 2697
BstNI CCWGG 4 cut(s) 1757, 1785, 1910, 2510
BstNSI RCATGY 3 cut(s) 1445, 1555, 2066
BstSCI CCNGG 5 cut(s) 1755, 1783, 1820, 1908, 2508
BstSFI CTRYAG 3 cut(s) 433, 1386, 1533
BstSLI GKGCMC 1 cut(s) 2337
BstV2I GAAGAC 2 cut(s) 517, 2004
BstXI CCANNNNNNTGG 1 cut(s) 2826
BstZI CGGCCG 1 cut(s) 718
Bsu15I ATCGAT 1 cut(s) 63
BsuI GTATCC 2 cut(s) 707, 1884
BsuTUI ATCGAT 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 489
BtsCI GGATG 4 cut(s) 750, 1145, 1434, 1617
BtsI GCAGTG 1 cut(s) 2048
BtsIMutI CAGTG 6 cut(s) 12, 129, 169, 1046, 2048, 2211
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 9 cut(s) 202, 276, 472, 1126, 1648, 1697, 1781, 1810, 2791
CaiI CAGNNNCTG 3 cut(s) 1007, 2356, 2852
CciI TCATGA 1 cut(s) 87
CfoI GCGC 3 cut(s) 317, 322, 2107
Cfr10I RCCGGY 2 cut(s) 1844, 2078
Cfr13I GGNCC 3 cut(s) 286, 760, 1771
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 1 cut(s) 132
Csp6I GTAC 4 cut(s) 1158, 1173, 1431, 2843
CspAI ACCGGT 2 cut(s) 1844, 2078
CviQI GTAC 4 cut(s) 1158, 1173, 1431, 2843
DdeI CTNAG 8 cut(s) 282, 821, 846, 1120, 1327, 1655, 1895, 2454
DraI TTTAAA 1 cut(s) 2539
DrdI GACNNNNNNGTC 1 cut(s) 1508
DseDI GACNNNNNNGTC 1 cut(s) 1508
EaeI YGGCCR 4 cut(s) 718, 975, 2157, 2435
EagI CGGCCG 1 cut(s) 718
Eam1104I CTCTTC 2 cut(s) 1725, 2642
EarI CTCTTC 2 cut(s) 1725, 2642
EciI GGCGGA 1 cut(s) 1109
Ecl136II GAGCTC 3 cut(s) 43, 121, 2425
EclXI CGGCCG 1 cut(s) 718
Eco130I CCWWGG 2 cut(s) 307, 2160
Eco147I AGGCCT 3 cut(s) 1451, 1755, 1900
Eco24I GRGCYC 3 cut(s) 45, 123, 2427
Eco31I GGTCTC 1 cut(s) 564
Eco32I GATATC 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 286, 1771
Eco47III AGCGCT 1 cut(s) 2106
Eco52I CGGCCG 1 cut(s) 718
Eco53kI GAGCTC 3 cut(s) 43, 121, 2425
Eco57I CTGAAG 5 cut(s) 581, 720, 2129, 2304, 2762
Eco88I CYCGRG 1 cut(s) 1558
EcoICRI GAGCTC 3 cut(s) 43, 121, 2425
EcoNI CCTNNNNNAGG 1 cut(s) 1326
EcoO109I RGGNCCY 2 cut(s) 286, 1771
EcoRI GAATTC 2 cut(s) 1992, 2624
EcoRII CCWGG 4 cut(s) 1755, 1783, 1908, 2508
EcoRV GATATC 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 307, 2160
EcoT22I ATGCAT 2 cut(s) 1105, 1664
EcoT38I GRGCYC 3 cut(s) 45, 123, 2427
ErhI CCWWGG 2 cut(s) 307, 2160
FalI AAGNNNNNCTT 4 cut(s) 804, 836, 839, 871
FauI CCCGC 1 cut(s) 1469
FbaI TGATCA 3 cut(s) 777, 1839, 2463
FblI GTMKAC 2 cut(s) 621, 1548
FokI GGATG 4 cut(s) 757, 1152, 1421, 1624
FriOI GRGCYC 3 cut(s) 45, 123, 2427
FspBI CTAG 2 cut(s) 308, 2186
GlaI GCGC 3 cut(s) 316, 321, 2106
HaeII RGCGCY 1 cut(s) 2108
HapII CCGG 4 cut(s) 1350, 1821, 1845, 2079
HgaI GACGC 1 cut(s) 132
HhaI GCGC 3 cut(s) 317, 322, 2107
Hin6I GCGC 3 cut(s) 315, 320, 2105
HinP1I GCGC 3 cut(s) 315, 320, 2105
HincII GTYRAC 1 cut(s) 2302
HindII GTYRAC 1 cut(s) 2302
HindIII AAGCTT 3 cut(s) 818, 1806, 2027
HpaII CCGG 4 cut(s) 1350, 1821, 1845, 2079
HphI GGTGA 8 cut(s) 283, 1610, 1834, 1859, 1952, 2093, 2339, 2374
Hpy166II GTNNAC 8 cut(s) 622, 831, 1315, 1549, 1860, 2302, 2575, 2843
Hpy8I GTNNAC 8 cut(s) 622, 831, 1315, 1549, 1860, 2302, 2575, 2843
HpyCH4III ACNGT 8 cut(s) 16, 164, 209, 1430, 1510, 2206, 2215, 2358
HpyCH4IV ACGT 3 cut(s) 230, 2487, 2595
HpyF3I CTNAG 8 cut(s) 282, 821, 846, 1120, 1327, 1655, 1895, 2454
HpySE526I ACGT 3 cut(s) 230, 2487, 2595
HspAI GCGC 3 cut(s) 315, 320, 2105
Ksp22I TGATCA 3 cut(s) 777, 1839, 2463
LguI GCTCTTC 1 cut(s) 1725
LmnI GCTCC 1 cut(s) 1529
LweI GCATC 7 cut(s) 348, 393, 1561, 1602, 1649, 1713, 2086
MaeI CTAG 2 cut(s) 308, 2186
MaeII ACGT 3 cut(s) 230, 2487, 2595
MhlI GDGCHC 7 cut(s) 45, 123, 1559, 1737, 2337, 2427, 2523
MlsI TGGCCA 2 cut(s) 977, 2159
MluNI TGGCCA 2 cut(s) 977, 2159
MlyI GAGTC 5 cut(s) 183, 348, 1051, 2121, 2677
MmeI TCCRAC 3 cut(s) 523, 969, 1462
Mox20I TGGCCA 2 cut(s) 977, 2159
Mph1103I ATGCAT 2 cut(s) 1105, 1664
MroXI GAANNNNTTC 3 cut(s) 1041, 1947, 2489
MscI TGGCCA 2 cut(s) 977, 2159
MseI TTAA 6 cut(s) 2048, 2219, 2339, 2538, 2619, 2768
MslI CAYNNNNRTG 2 cut(s) 1704, 2153
Msp20I TGGCCA 2 cut(s) 977, 2159
MspA1I CMGCKG 1 cut(s) 2324
MspI CCGG 4 cut(s) 1350, 1821, 1845, 2079
MspR9I CCNGG 5 cut(s) 1757, 1785, 1822, 1910, 2510
MteI GCGCNGCGC 1 cut(s) 318
Mva1269I GAATGC 3 cut(s) 729, 866, 1980
MvaI CCWGG 4 cut(s) 1757, 1785, 1910, 2510
NciI CCSGG 1 cut(s) 1822
NlaIV GGNNCC 4 cut(s) 697, 761, 1773, 2149
NmuCI GTSAC 8 cut(s) 428, 647, 730, 1054, 1847, 2074, 2209, 2669
NsiI ATGCAT 2 cut(s) 1105, 1664
NspI RCATGY 3 cut(s) 1445, 1555, 2066
NspV TTCGAA 3 cut(s) 248, 453, 1951
OliI CACNNNNGTG 1 cut(s) 2153
PaeR7I CTCGAG 1 cut(s) 1558
PagI TCATGA 1 cut(s) 87
PceI AGGCCT 3 cut(s) 1451, 1755, 1900
PciI ACATGT 2 cut(s) 1441, 1551
PciSI GCTCTTC 1 cut(s) 1725
PctI GAATGC 3 cut(s) 729, 866, 1980
PdmI GAANNNNTTC 3 cut(s) 1041, 1947, 2489
PfeI GAWTC 5 cut(s) 31, 100, 626, 2140, 2365
PflMI CCANNNNNTGG 1 cut(s) 1915
PinAI ACCGGT 2 cut(s) 1844, 2078
Ple19I CGATCG 1 cut(s) 2697
PleI GAGTC 5 cut(s) 182, 348, 1051, 2121, 2676
PpsI GAGTC 5 cut(s) 182, 348, 1051, 2121, 2676
Ppu21I YACGTR 1 cut(s) 231
PpuMI RGGWCCY 2 cut(s) 286, 1771
PscI ACATGT 2 cut(s) 1441, 1551
Psp124BI GAGCTC 3 cut(s) 45, 123, 2427
Psp1406I AACGTT 1 cut(s) 2487
Psp5II RGGWCCY 2 cut(s) 286, 1771
Psp6I CCWGG 4 cut(s) 1755, 1783, 1908, 2508
PspGI CCWGG 4 cut(s) 1755, 1783, 1908, 2508
PspN4I GGNNCC 4 cut(s) 697, 761, 1773, 2149
PspPI GGNCC 3 cut(s) 286, 760, 1771
PspPPI RGGWCCY 2 cut(s) 286, 1771
PspXI VCTCGAGB 1 cut(s) 1558
PstI CTGCAG 2 cut(s) 1390, 1537
PstNI CAGNNNCTG 3 cut(s) 1007, 2356, 2852
PvuI CGATCG 1 cut(s) 2697
PvuII CAGCTG 1 cut(s) 2324
RsaI GTAC 4 cut(s) 1159, 1174, 1432, 2844
RsaNI GTAC 4 cut(s) 1158, 1173, 1431, 2843
RseI CAYNNNNRTG 2 cut(s) 1704, 2153
SacI GAGCTC 3 cut(s) 45, 123, 2427
SapI GCTCTTC 1 cut(s) 1725
SaqAI TTAA 6 cut(s) 2048, 2219, 2339, 2538, 2619, 2768
Sau96I GGNCC 3 cut(s) 286, 760, 1771
SchI GAGTC 5 cut(s) 183, 348, 1051, 2121, 2677
ScrFI CCNGG 5 cut(s) 1757, 1785, 1822, 1910, 2510
SduI GDGCHC 7 cut(s) 45, 123, 1559, 1737, 2337, 2427, 2523
SfaNI GCATC 7 cut(s) 348, 393, 1561, 1602, 1649, 1713, 2086
SfcI CTRYAG 3 cut(s) 433, 1386, 1533
Sfr274I CTCGAG 1 cut(s) 1558
SfuI TTCGAA 3 cut(s) 248, 453, 1951
SgrAI CRCCGGYG 1 cut(s) 1844
SinI GGWCC 2 cut(s) 286, 1771
SlaI CTCGAG 1 cut(s) 1558
SmiMI CAYNNNNRTG 2 cut(s) 1704, 2153
SmlI CTYRAG 3 cut(s) 751, 1558, 2496
SmoI CTYRAG 3 cut(s) 751, 1558, 2496
SseBI AGGCCT 3 cut(s) 1451, 1755, 1900
SsiI CCGC 4 cut(s) 1094, 1476, 1799, 1863
SspMI CTAG 2 cut(s) 308, 2186
SstI GAGCTC 3 cut(s) 45, 123, 2427
StuI AGGCCT 3 cut(s) 1451, 1755, 1900
StyD4I CCNGG 5 cut(s) 1755, 1783, 1820, 1908, 2508
StyI CCWWGG 2 cut(s) 307, 2160
TaaI ACNGT 8 cut(s) 16, 164, 209, 1430, 1510, 2206, 2215, 2358
TaiI ACGT 3 cut(s) 233, 2490, 2598
TaqI TCGA 8 cut(s) 63, 248, 453, 1076, 1559, 1951, 2132, 2449
TatI WGTACW 1 cut(s) 1157
TfiI GAWTC 5 cut(s) 31, 100, 626, 2140, 2365
Tru1I TTAA 6 cut(s) 2048, 2219, 2339, 2538, 2619, 2768
Tru9I TTAA 6 cut(s) 2048, 2219, 2339, 2538, 2619, 2768
TscAI CASTG 6 cut(s) 19, 136, 169, 1053, 2048, 2218
TseFI GTSAC 8 cut(s) 428, 647, 730, 1054, 1847, 2074, 2209, 2669
Tsp45I GTSAC 8 cut(s) 428, 647, 730, 1054, 1847, 2074, 2209, 2669
TspRI CASTG 6 cut(s) 19, 136, 169, 1053, 2048, 2218
Van91I CCANNNNNTGG 1 cut(s) 1915
VpaK11BI GGWCC 2 cut(s) 286, 1771
XagI CCTNNNNNAGG 1 cut(s) 1326
XapI RAATTY 5 cut(s) 1683, 1946, 1992, 2624, 2799
XceI RCATGY 3 cut(s) 1445, 1555, 2066
XcmI CCANNNNNNNNNTGG 2 cut(s) 985, 2425
XhoI CTCGAG 1 cut(s) 1558
XmaJI CCTAGG 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 621, 1548
XmnI GAANNNNTTC 3 cut(s) 1041, 1947, 2489
XspI CTAG 2 cut(s) 308, 2186
Zsp2I ATGCAT 2 cut(s) 1105, 1664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.