RLG00000010052

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
62241373 .. 62244476
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010052

Sequence Viewer

Length: 3033 bp
ATGTCCAAGTCTACCACCCTGCATGCAAAGTTGGGGAGCATTGAGTTGCAGCTCGATGTTCCGAGCACTGGTCTTGACATCAGCAAAAGAAAATGGCATTCTGCTTTCATTACCATCTATTGCTCTAGAGCCTTCCACTCTTTAAGACCTTCTACTCTTCCCAAACATACCAACTCCACATTCATATCTCGCACACTCTCTTACTCCATAGTTAGGGTCGAGCCAGTCTCGGTGCCAGCCATCAATGGATTCAAAGCAGACCAAAAAAGCCTCACTGAGCTTGTGAAGGAGAAAAATCTCAACAAGCTCTTGGAGCTTGGAGGGGTTCAAGAAGTAGCATCAGCTCTCAAAACTGATGCAGAGCATGGAATCAATGGTGATGATGCTGAAGACATTGCGTGCAGACACGAAGCATTTGGTTCCAACACATACAAGAAACCGCCAACGCAAGGATTCCTCCACTTTGTGTGGGAAGCCTTGAAAGACCTTACAATTCTCATTCTTTTAGGCTGTGCTGCGCTCTCTCTTGGTTTTGGTATAAAAGAGCATGGACTAAAAGAAGGTTGGATTGATGGTGGAAGCATTTGTCTCGCAGTCATTCTGGTCATTTCTGTTTCAGCAATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGTTGTCGAAAGTCAGCAACAATCTCCAGATTGAGGCTGTGAGAAATGGAAGGCGCCAACTGATTTCAATATTCGAAATTGTGGTGGATCAAGTTCCAGCTGATGGATTACTTCTAGAGGGCCACTCTTTATCAGTAGATGAATCAAGCATGACAGGGGAGAGCGACCATGTTGAGATAAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATAGCTGATGGTTATGGTCGCATGCTTGTCACATCAGTCGGGATGAACACGAATTGGGGTGAAATGATGAGCCAAATTAGCCAAGACACCAGTGAAAAGACACCTCTGCAAGCACGTCTAGACACGCTAACTTCTTCGATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGCTGGTCAGATACTTCACAGGGAACACCGAGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACCAAATCTGACGACATAATAAACGCTGTCATTGGGATTGTAGCAGCAGCAGTTACAATTGTTGTGGTAGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCATATTCCATGAAGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCATGTGAGACCATGGGATCTACTACAACAATTTGTACCGACAAAACAGGCACTCTGACCATGAACCAGATGAAGGTAACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATCTCTCCTTATGTTCTCAACTTGATCCAAGAAGGGGTTTCTCTCAACACAACTGGTAGTGTGTACAGCCCTAGCTTGGATTCCGAAATTGAGATCTCTGGCAGTCCCACTGAAAAGGCTATTCTTTCATGGGTAGTACATGGGTCGAAGATAAATATGGAGAAAGTGGTGAAGAGCTGTAGCATTCTCCACGTCGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTGGTGAAGAGAAAGGCAGACAACTCAATCCATGTACACAGGAAAGGAGCAGCAGAAATGATACTAGCAATGTGTACAAGTTACTATGATGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAATGAACTTTGAGCAGATTATTCAAGGTATGGCAGCCAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTCCAGCAGAGGAGCAAGTTGAAGGAGACCAGAAAGTTGTGCTAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGGCCTTAAAGATCCATGCCGTCCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCTGGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAGTGTGGGATACTCAGGCCTGGTCAGGATATGCTCGGAGCAGTGATAGAAGGTGTCGAATTTCGCAACTACACGCCAGAAGAGAGAATGGAGAAAGTTGAGAAAATTTCTGTGATGGCAAGGTCTTCTCCATTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACAGGTGATGGCACCAATGATGCACCGGCATTAAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATAATGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGATGTGGGGAAGATGTGTGTACAATAATATCCAGAAGTTCATACAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCGCTTGCTCTTGCCACAGAAAAACCCACAAGAGAACTGATGGAGAAGCCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGGGCAAAGCAATCTTTGATGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCAAGGAAGCTAGAGAAGAAGAATGTGTTCAAGGGAATACATACCAATAAGTTGTTCATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAGTCTATACCTGTTCCACAGAAACCCATTTTCAGCTATCTGAAGATGAAGAAAAATAAGCACCCCAGATGA

Protein Analysis

1011

Amino Acids

110.58

Weight (kDa)

7.24

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 106 - 175 3.9e-13 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 248 - 317 1.1e-12 P-type ATPase actuator domain
Cation_ATPase PF13246 480 - 651 2.3e-27 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 620 - 761 2.9e-12 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 832 - 989 2.5e-39 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2477
AccB1I GGYRCC 3 cut(s) 232, 708, 2249
AccB7I CCANNNNNTGG 1 cut(s) 758
AccI GTMKAC 2 cut(s) 11, 1210
AccIII TCCGGA 1 cut(s) 1278
AciI CCGC 3 cut(s) 440, 2031, 2474
AclWI GGATC 5 cut(s) 750, 1315, 1438, 1934, 2828
AcoI YGGCCR 1 cut(s) 2942
AcsI RAATTY 3 cut(s) 2108, 2154, 2873
AcuI CTGAAG 4 cut(s) 408, 2349, 2828, 3023
AcyI GRCGYC 1 cut(s) 709
AdeI CACNNNGTG 2 cut(s) 466, 2052
AfaI GTAC 7 cut(s) 1112, 1327, 1484, 1557, 1686, 1726, 2402
AfeI AGCGCT 1 cut(s) 2553
AfiI CCNNNNNNNGG 9 cut(s) 68, 213, 449, 688, 758, 1363, 1453, 1495, 2606
AhdI GACNNNNNGTC 1 cut(s) 658
AjiI CACGTC 2 cut(s) 989, 1612
AjnI CCWGG 3 cut(s) 1951, 2068, 2736
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 2795, 2827
AleI CACNNNNGTG 1 cut(s) 2726
Alw21I GWGCWC 2 cut(s) 68, 2333
Alw26I GTCTC 5 cut(s) 232, 593, 1292, 1872, 2010
AlwI GGATC 5 cut(s) 750, 1315, 1438, 1934, 2828
Aor13HI TCCGGA 1 cut(s) 1278
Aor51HI AGCGCT 1 cut(s) 2553
AoxI GGCC 4 cut(s) 775, 1930, 2066, 2942
ApeKI GCWGC 9 cut(s) 49, 515, 1119, 1169, 1172, 1700, 1811, 1818, 2450
ApoI RAATTY 3 cut(s) 2108, 2154, 2873
Asp700I GAANNNNTTC 2 cut(s) 851, 2783
AspLEI GCGC 4 cut(s) 520, 711, 2554, 2620
AspS9I GGNCC 3 cut(s) 775, 1276, 1930
AsuHPI GGTGA 8 cut(s) 389, 944, 1600, 1666, 2005, 2020, 2255, 2428
AsuII TTCGAA 2 cut(s) 729, 1628
AvaII GGWCC 1 cut(s) 1276
BalI TGGCCA 1 cut(s) 2944
BanI GGYRCC 3 cut(s) 232, 708, 2249
BanII GRGCYC 1 cut(s) 2333
BbsI GAAGAC 2 cut(s) 396, 2166
Bbv12I GWGCWC 2 cut(s) 68, 2333
BbvI GCAGC 9 cut(s) 61, 502, 1131, 1181, 1184, 1712, 1823, 1830, 2462
BceAI ACGGC 1 cut(s) 1932
BcgI CGANNNNNNTGC 4 cut(s) 571, 605, 1819, 1853
BciT130I CCWGG 3 cut(s) 1953, 2070, 2738
BciVI GTATCC 1 cut(s) 2052
BclI TGATCA 2 cut(s) 2460, 2532
BcoDI GTCTC 5 cut(s) 232, 593, 1292, 1872, 2010
BfaI CTAG 7 cut(s) 126, 770, 992, 1491, 1715, 2768, 2957
BfmI CTRYAG 2 cut(s) 631, 1597
BfoI RGCGCY 3 cut(s) 712, 2555, 2621
BfuAI ACCTGC 1 cut(s) 2477
BfuI GTATCC 1 cut(s) 2052
BglII AGATCT 1 cut(s) 1512
Bme1390I CCNGG 3 cut(s) 1953, 2070, 2738
Bme18I GGWCC 1 cut(s) 1276
BmeRI GACNNNNNGTC 1 cut(s) 658
BmgBI CACGTC 2 cut(s) 989, 1612
BmgT120I GGNCC 3 cut(s) 775, 1276, 1930
BmiI GGNNCC 5 cut(s) 234, 421, 710, 2251, 2648
BmrFI CCNGG 3 cut(s) 1953, 2070, 2738
BmrI ACTGGG 1 cut(s) 2675
BmsI GCATC 7 cut(s) 346, 347, 373, 1729, 1817, 1839, 2248
BmuI ACTGGG 1 cut(s) 2675
BpiI GAAGAC 2 cut(s) 396, 2166
BplI GAGNNNNNCTC 4 cut(s) 212, 244, 764, 796
BpmI CTGGAG 1 cut(s) 665
Bpu14I TTCGAA 2 cut(s) 729, 1628
BpuEI CTTGAG 2 cut(s) 2643, 2852
BsaHI GRCGYC 1 cut(s) 709
BsaI GGTCTC 2 cut(s) 1292, 1872
BsaJI CCNNGG 2 cut(s) 1086, 1302
BsaWI WCCGGW 2 cut(s) 1278, 2012
BsaXI ACNNNNNCTCC 4 cut(s) 1638, 1668, 2007, 2037
Bsc4I CCNNNNNNNGG 9 cut(s) 68, 213, 449, 688, 758, 1363, 1453, 1495, 2606
Bse118I RCCGGY 1 cut(s) 2263
Bse1I ACTGG 6 cut(s) 73, 224, 963, 1477, 2603, 2670
Bse3DI GCAATG 5 cut(s) 393, 1278, 1725, 2210, 2823
BseAI TCCGGA 1 cut(s) 1278
BseBI CCWGG 3 cut(s) 1953, 2070, 2738
BseDI CCNNGG 2 cut(s) 1086, 1302
BseGI GGATG 3 cut(s) 921, 1096, 2356
BseLI CCNNNNNNNGG 9 cut(s) 68, 213, 449, 688, 758, 1363, 1453, 1495, 2606
BseMI GCAATG 5 cut(s) 393, 1278, 1725, 2210, 2823
BseMII CTCAG 6 cut(s) 267, 834, 1837, 2040, 2077, 2346
BseNI ACTGG 6 cut(s) 73, 224, 963, 1477, 2603, 2670
BseRI GAGGAG 1 cut(s) 1877
BseXI GCAGC 9 cut(s) 61, 502, 1131, 1181, 1184, 1712, 1823, 1830, 2462
BseYI CCCAGC 1 cut(s) 1988
BsgI GTGCAG 1 cut(s) 421
BshFI GGCC 4 cut(s) 777, 1932, 2068, 2944
BshNI GGYRCC 3 cut(s) 232, 708, 2249
BsiHKAI GWGCWC 2 cut(s) 68, 2333
BsiSI CCGG 3 cut(s) 1279, 2013, 2264
BslFI GGGAC 5 cut(s) 880, 1509, 1935, 2480, 2916
BslI CCNNNNNNNGG 9 cut(s) 68, 213, 449, 688, 758, 1363, 1453, 1495, 2606
BsmAI GTCTC 5 cut(s) 232, 593, 1292, 1872, 2010
BsmFI GGGAC 5 cut(s) 880, 1509, 1935, 2480, 2916
BsmI GAATGC 3 cut(s) 97, 1602, 1835
BsnI GGCC 4 cut(s) 777, 1932, 2068, 2944
Bso31I GGTCTC 2 cut(s) 1292, 1872
Bsp119I TTCGAA 2 cut(s) 729, 1628
Bsp1286I GDGCHC 2 cut(s) 68, 2333
Bsp13I TCCGGA 1 cut(s) 1278
Bsp1407I TGTACA 4 cut(s) 1482, 1684, 1724, 2400
Bsp143I GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
Bsp19I CCATGG 1 cut(s) 1302
BspACI CCGC 3 cut(s) 440, 2031, 2474
BspANI GGCC 4 cut(s) 777, 1932, 2068, 2944
BspCNI CTCAG 6 cut(s) 268, 835, 1836, 2041, 2076, 2345
BspEI TCCGGA 1 cut(s) 1278
BspLI GGNNCC 5 cut(s) 234, 421, 710, 2251, 2648
BspMI ACCTGC 1 cut(s) 2477
BspPI GGATC 5 cut(s) 750, 1315, 1438, 1934, 2828
BspQI GCTCTTC 1 cut(s) 1586
BspT104I TTCGAA 2 cut(s) 729, 1628
BspT107I GGYRCC 3 cut(s) 232, 708, 2249
BspTNI GGTCTC 2 cut(s) 1292, 1872
BsrDI GCAATG 5 cut(s) 393, 1278, 1725, 2210, 2823
BsrFI RCCGGY 1 cut(s) 2263
BsrGI TGTACA 4 cut(s) 1482, 1684, 1724, 2400
BsrI ACTGG 6 cut(s) 73, 224, 963, 1477, 2603, 2670
BssAI RCCGGY 1 cut(s) 2263
BssECI CCNNGG 2 cut(s) 1086, 1302
BssMI GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
BssNI GRCGYC 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 1302
Bst2UI CCWGG 3 cut(s) 1953, 2070, 2738
Bst4CI ACNGT 3 cut(s) 648, 2377, 2440
Bst6I CTCTTC 5 cut(s) 162, 1244, 1586, 1652, 2124
BstACI GRCGYC 1 cut(s) 709
BstAUI TGTACA 4 cut(s) 1482, 1684, 1724, 2400
BstBI TTCGAA 2 cut(s) 729, 1628
BstC8I GCNNGC 7 cut(s) 24, 237, 400, 896, 984, 1816, 2556
BstDEI CTNAG 7 cut(s) 276, 843, 1371, 1823, 2049, 2063, 2332
BstDSI CCRYGG 1 cut(s) 1302
BstF5I GGATG 3 cut(s) 921, 1096, 2356
BstH2I RGCGCY 3 cut(s) 712, 2555, 2621
BstHHI GCGC 4 cut(s) 520, 711, 2554, 2620
BstKTI GATC 9 cut(s) 745, 1310, 1446, 1515, 1942, 2463, 2535, 2715, 2823
BstMAI GTCTC 5 cut(s) 232, 593, 1292, 1872, 2010
BstMBI GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
BstMWI GCNNNNNNNGC 5 cut(s) 313, 951, 1827, 2369, 2483
BstNI CCWGG 3 cut(s) 1953, 2070, 2738
BstNSI RCATGY 3 cut(s) 26, 898, 1296
BstSCI CCNGG 3 cut(s) 1951, 2068, 2736
BstSFI CTRYAG 2 cut(s) 631, 1597
BstV1I GCAGC 9 cut(s) 61, 502, 1131, 1181, 1184, 1712, 1823, 1830, 2462
BstV2I GAAGAC 2 cut(s) 396, 2166
BstX2I RGATCY 3 cut(s) 1307, 1512, 1939
BstXI CCANNNNNNTGG 2 cut(s) 1988, 2952
BstYI RGATCY 3 cut(s) 1307, 1512, 1939
BsuI GTATCC 1 cut(s) 2052
BsuRI GGCC 4 cut(s) 777, 1932, 2068, 2944
BtgI CCRYGG 1 cut(s) 1302
BtgZI GCGATG 1 cut(s) 1816
BtrI CACGTC 2 cut(s) 989, 1612
BtsCI GGATG 3 cut(s) 921, 1096, 2356
BtsI GCAGTG 3 cut(s) 2097, 2241, 2835
BveI ACCTGC 1 cut(s) 2477
Cac8I GCNNGC 7 cut(s) 24, 237, 400, 896, 984, 1816, 2556
CfoI GCGC 4 cut(s) 520, 711, 2554, 2620
Cfr10I RCCGGY 1 cut(s) 2263
Cfr13I GGNCC 3 cut(s) 775, 1276, 1930
Csp6I GTAC 7 cut(s) 1111, 1326, 1483, 1556, 1685, 1725, 2401
CspCI CAANNNNNGTGG 2 cut(s) 1170, 1205
CviQI GTAC 7 cut(s) 1111, 1326, 1483, 1556, 1685, 1725, 2401
DdeI CTNAG 7 cut(s) 276, 843, 1371, 1823, 2049, 2063, 2332
DinI GGCGCC 1 cut(s) 710
DpnI GATC 9 cut(s) 744, 1309, 1445, 1514, 1941, 2462, 2534, 2714, 2822
DpnII GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
DraIII CACNNNGTG 2 cut(s) 466, 2052
DriI GACNNNNNGTC 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 2942
Eam1104I CTCTTC 5 cut(s) 162, 1244, 1586, 1652, 2124
Eam1105I GACNNNNNGTC 1 cut(s) 658
EarI CTCTTC 5 cut(s) 162, 1244, 1586, 1652, 2124
Ecl136II GAGCTC 1 cut(s) 2331
Eco130I CCWWGG 1 cut(s) 1302
Eco147I AGGCCT 1 cut(s) 2068
Eco24I GRGCYC 1 cut(s) 2333
Eco31I GGTCTC 2 cut(s) 1292, 1872
Eco47I GGWCC 1 cut(s) 1276
Eco47III AGCGCT 1 cut(s) 2553
Eco53kI GAGCTC 1 cut(s) 2331
Eco57I CTGAAG 4 cut(s) 408, 2349, 2828, 3023
EcoICRI GAGCTC 1 cut(s) 2331
EcoRII CCWGG 3 cut(s) 1951, 2068, 2736
EcoT14I CCWWGG 1 cut(s) 1302
EcoT22I ATGCAT 2 cut(s) 1832, 2921
EcoT38I GRGCYC 1 cut(s) 2333
EgeI GGCGCC 1 cut(s) 710
EheI GGCGCC 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 1302
FaqI GGGAC 5 cut(s) 880, 1509, 1935, 2480, 2916
FbaI TGATCA 2 cut(s) 2460, 2532
FblI GTMKAC 2 cut(s) 11, 1210
FokI GGATG 3 cut(s) 928, 1103, 2363
FriOI GRGCYC 1 cut(s) 2333
FspBI CTAG 7 cut(s) 126, 770, 992, 1491, 1715, 2768, 2957
GlaI GCGC 4 cut(s) 519, 710, 2553, 2619
GsaI CCCAGC 1 cut(s) 1992
GsuI CTGGAG 1 cut(s) 665
HaeII RGCGCY 3 cut(s) 712, 2555, 2621
HaeIII GGCC 4 cut(s) 777, 1932, 2068, 2944
HapII CCGG 3 cut(s) 1279, 2013, 2264
HhaI GCGC 4 cut(s) 520, 711, 2554, 2620
Hin1I GRCGYC 1 cut(s) 709
Hin6I GCGC 4 cut(s) 518, 709, 2552, 2618
HinP1I GCGC 4 cut(s) 518, 709, 2552, 2618
HincII GTYRAC 1 cut(s) 2527
HindII GTYRAC 1 cut(s) 2527
HindIII AAGCTT 2 cut(s) 1407, 2189
HinfI GANTC 9 cut(s) 249, 369, 453, 797, 847, 1225, 1391, 1499, 2302
HpaII CCGG 3 cut(s) 1279, 2013, 2264
HphI GGTGA 8 cut(s) 389, 944, 1600, 1666, 2005, 2020, 2255, 2428
Hpy166II GTNNAC 8 cut(s) 12, 1211, 1483, 1687, 1725, 1996, 2401, 2527
Hpy188I TCNGA 9 cut(s) 63, 1067, 1135, 1347, 1504, 1826, 2087, 2335, 3003
Hpy8I GTNNAC 8 cut(s) 12, 1211, 1483, 1687, 1725, 1996, 2401, 2527
Hpy99I CGWCG 1 cut(s) 1616
HpyCH4III ACNGT 3 cut(s) 648, 2377, 2440
HpyCH4IV ACGT 3 cut(s) 988, 1611, 1998
HpyF10VI GCNNNNNNNGC 5 cut(s) 313, 951, 1827, 2369, 2483
HpyF3I CTNAG 7 cut(s) 276, 843, 1371, 1823, 2049, 2063, 2332
HpySE526I ACGT 3 cut(s) 988, 1611, 1998
Hsp92I GRCGYC 1 cut(s) 709
HspAI GCGC 4 cut(s) 518, 709, 2552, 2618
KasI GGCGCC 1 cut(s) 708
Kpn2I TCCGGA 1 cut(s) 1278
Ksp22I TGATCA 2 cut(s) 2460, 2532
Kzo9I GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
LguI GCTCTTC 1 cut(s) 1586
LmnI GCTCC 6 cut(s) 36, 313, 1697, 1864, 2087, 2549
Lsp1109I GCAGC 9 cut(s) 61, 502, 1131, 1181, 1184, 1712, 1823, 1830, 2462
LweI GCATC 7 cut(s) 346, 347, 373, 1729, 1817, 1839, 2248
MaeI CTAG 7 cut(s) 126, 770, 992, 1491, 1715, 2768, 2957
MaeII ACGT 3 cut(s) 988, 1611, 1998
MaeIII GTNAC 8 cut(s) 838, 901, 1177, 1222, 1366, 1730, 2236, 2830
MalI GATC 9 cut(s) 744, 1309, 1445, 1514, 1941, 2462, 2534, 2714, 2822
MboI GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
MfeI CAATTG 3 cut(s) 1182, 2835, 2946
MflI RGATCY 3 cut(s) 1307, 1512, 1939
MhlI GDGCHC 2 cut(s) 68, 2333
MlsI TGGCCA 1 cut(s) 2944
MluNI TGGCCA 1 cut(s) 2944
Mly113I GGCGCC 1 cut(s) 709
MlyI GAGTC 1 cut(s) 1219
MmeI TCCRAC 3 cut(s) 447, 545, 2455
Mox20I TGGCCA 1 cut(s) 2944
Mph1103I ATGCAT 2 cut(s) 1832, 2921
MroI TCCGGA 1 cut(s) 1278
MroXI GAANNNNTTC 2 cut(s) 851, 2783
MscI TGGCCA 1 cut(s) 2944
MseI TTAA 6 cut(s) 143, 1623, 1755, 1935, 2270, 2501
MslI CAYNNNNRTG 2 cut(s) 2726, 2828
Msp20I TGGCCA 1 cut(s) 2944
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 3 cut(s) 1279, 2013, 2264
MspR9I CCNGG 3 cut(s) 1953, 2070, 2738
MunI CAATTG 3 cut(s) 1182, 2835, 2946
Mva1269I GAATGC 3 cut(s) 97, 1602, 1835
MvaI CCWGG 3 cut(s) 1953, 2070, 2738
MwoI GCNNNNNNNGC 5 cut(s) 313, 951, 1827, 2369, 2483
NarI GGCGCC 1 cut(s) 709
NcoI CCATGG 1 cut(s) 1302
NdeII GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
NlaIV GGNNCC 5 cut(s) 234, 421, 710, 2251, 2648
NmuCI GTSAC 5 cut(s) 838, 901, 1222, 2236, 2830
NsiI ATGCAT 2 cut(s) 1832, 2921
NspI RCATGY 3 cut(s) 26, 898, 1296
NspV TTCGAA 2 cut(s) 729, 1628
OliI CACNNNNGTG 1 cut(s) 2726
PaeI GCATGC 2 cut(s) 26, 898
PceI AGGCCT 1 cut(s) 2068
PciSI GCTCTTC 1 cut(s) 1586
PctI GAATGC 3 cut(s) 97, 1602, 1835
PdmI GAANNNNTTC 2 cut(s) 851, 2783
PfeI GAWTC 8 cut(s) 249, 369, 453, 797, 847, 1391, 1499, 2302
PflMI CCANNNNNTGG 1 cut(s) 758
PleI GAGTC 1 cut(s) 1219
PluTI GGCGCC 1 cut(s) 712
PpsI GAGTC 1 cut(s) 1219
Psp124BI GAGCTC 1 cut(s) 2333
Psp6I CCWGG 3 cut(s) 1951, 2068, 2736
PspFI CCCAGC 1 cut(s) 1988
PspGI CCWGG 3 cut(s) 1951, 2068, 2736
PspN4I GGNNCC 5 cut(s) 234, 421, 710, 2251, 2648
PspPI GGNCC 3 cut(s) 775, 1276, 1930
PsuI RGATCY 3 cut(s) 1307, 1512, 1939
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 7 cut(s) 1112, 1327, 1484, 1557, 1686, 1726, 2402
RsaNI GTAC 7 cut(s) 1111, 1326, 1483, 1556, 1685, 1725, 2401
RseI CAYNNNNRTG 2 cut(s) 2726, 2828
SacI GAGCTC 1 cut(s) 2333
SapI GCTCTTC 1 cut(s) 1586
SaqAI TTAA 6 cut(s) 143, 1623, 1755, 1935, 2270, 2501
Sau3AI GATC 9 cut(s) 742, 1307, 1443, 1512, 1939, 2460, 2532, 2712, 2820
Sau96I GGNCC 3 cut(s) 775, 1276, 1930
SchI GAGTC 1 cut(s) 1219
ScrFI CCNGG 3 cut(s) 1953, 2070, 2738
SduI GDGCHC 2 cut(s) 68, 2333
SfaNI GCATC 7 cut(s) 346, 347, 373, 1729, 1817, 1839, 2248
SfcI CTRYAG 2 cut(s) 631, 1597
SfoI GGCGCC 1 cut(s) 710
SfuI TTCGAA 2 cut(s) 729, 1628
SinI GGWCC 1 cut(s) 1276
SmiMI CAYNNNNRTG 2 cut(s) 2726, 2828
SmlI CTYRAG 2 cut(s) 2658, 2867
SmoI CTYRAG 2 cut(s) 2658, 2867
SphI GCATGC 2 cut(s) 26, 898
SseBI AGGCCT 1 cut(s) 2068
SsiI CCGC 3 cut(s) 440, 2031, 2474
SspDI GGCGCC 1 cut(s) 708
SspI AATATT 1 cut(s) 726
SspMI CTAG 7 cut(s) 126, 770, 992, 1491, 1715, 2768, 2957
SstI GAGCTC 1 cut(s) 2333
StuI AGGCCT 1 cut(s) 2068
StyD4I CCNGG 3 cut(s) 1951, 2068, 2736
StyI CCWWGG 1 cut(s) 1302
TaaI ACNGT 3 cut(s) 648, 2377, 2440
TaiI ACGT 3 cut(s) 991, 1614, 2001
TaqI TCGA 9 cut(s) 54, 219, 662, 729, 1010, 1565, 1614, 1628, 2106
TatI WGTACW 6 cut(s) 1110, 1482, 1555, 1684, 1724, 2400
TauI GCSGC 1 cut(s) 2477
TfiI GAWTC 8 cut(s) 249, 369, 453, 797, 847, 1391, 1499, 2302
Tru1I TTAA 6 cut(s) 143, 1623, 1755, 1935, 2270, 2501
Tru9I TTAA 6 cut(s) 143, 1623, 1755, 1935, 2270, 2501
TseFI GTSAC 5 cut(s) 838, 901, 1222, 2236, 2830
TseI GCWGC 9 cut(s) 49, 515, 1119, 1169, 1172, 1700, 1811, 1818, 2450
Tsp45I GTSAC 5 cut(s) 838, 901, 1222, 2236, 2830
Van91I CCANNNNNTGG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 1276
XapI RAATTY 3 cut(s) 2108, 2154, 2873
XbaI TCTAGA 3 cut(s) 125, 769, 991
XceI RCATGY 3 cut(s) 26, 898, 1296
XmiI GTMKAC 2 cut(s) 11, 1210
XmnI GAANNNNTTC 2 cut(s) 851, 2783
XspI CTAG 7 cut(s) 126, 770, 992, 1491, 1715, 2768, 2957
Zsp2I ATGCAT 2 cut(s) 1832, 2921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.