Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

52675395 .. 52675940

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1426000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCGGAGCAAAGAATGCAGAAAGTTGATGTAATTAACGTGATGGCGAGGTCTTCACCATTTGATAAGCTTCTGATGGTGCATTGCTTGAAACAGAAAGGCTATGTGGTTGCTGTGACAGTTGTTGGTAAGAATGATGTGCCCACATTTAAAGAAGTTGACATCGGAGTTTTGATGGGGATTCAGGGCACTGAAGTTGCCAATGAGAGCTCAGACTTTGTCATCTTAGATGACAAATTTGCAACTTTGCTCACAATAGATGTTGCAATTATTGTGATCAACTTTGTGGCAGCAACCTCAGCCGATGAAGTACCATTAATAGCGTTCCAGCTGCTGTGGGTGAATCTGATTGTGGACACAATGGCTGCTCTAGTTTTCGTCACAGATAAGCCTGCCAAAGAGCTCATGGAGAGGCCTCTCGTGGGTCCAATGGTGATCACCAACATCATATGGAGGAACCTTCTACCTCAAGCTTCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

161

Amino Acids

17.66

Weight (kDa)

4.77

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	104 - 154	6.9e-10	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	5 cut(s)	70, 210, 331, 403, 473
AluI	AGCT	5 cut(s)	70, 210, 331, 403, 473
Alw21I	GWGCWC	2 cut(s)	212, 405
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	3 cut(s)	290, 331, 365
ApoI	RAATTY	1 cut(s)	236
AseI	ATTAAT	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	48, 352, 430, 445
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	2 cut(s)	144, 191
BanII	GRGCYC	2 cut(s)	212, 405
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	212, 405
BbvCI	CCTCAGC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	302, 318, 352
BccI	CCATC	3 cut(s)	37, 70, 169
BclI	TGATCA	2 cut(s)	276, 435
BfaI	CTAG	2 cut(s)	371, 481
BisI	GCNGC	3 cut(s)	291, 332, 366
BlsI	GCNGC	3 cut(s)	292, 333, 367
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	2 cut(s)	426, 458
BpiI	GAAGAC	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	225, 312
BseSI	GKGCMC	2 cut(s)	144, 191
BseXI	GCAGC	3 cut(s)	302, 318, 352
BshFI	GGCC	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	212, 405
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	415
Bsp1286I	GDGCHC	4 cut(s)	144, 191, 212, 405
Bsp143I	GATC	2 cut(s)	276, 435
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	2 cut(s)	224, 311
BspLI	GGNNCC	2 cut(s)	426, 458
BsrDI	GCAATG	1 cut(s)	82
BssMI	GATC	2 cut(s)	276, 435
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	211, 226, 298
BstKTI	GATC	2 cut(s)	279, 438
BstMBI	GATC	2 cut(s)	276, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 299
BstSLI	GKGCMC	2 cut(s)	144, 191
BstV1I	GCAGC	3 cut(s)	302, 318, 352
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	1 cut(s)	406
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	3 cut(s)	211, 226, 298
DpnI	GATC	2 cut(s)	278, 437
DpnII	GATC	2 cut(s)	276, 435
DraI	TTTAAA	1 cut(s)	151
Ecl136II	GAGCTC	2 cut(s)	210, 403
Eco147I	AGGCCT	1 cut(s)	415
Eco24I	GRGCYC	2 cut(s)	212, 405
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	2 cut(s)	210, 403
Eco57I	CTGAAG	1 cut(s)	213
EcoICRI	GAGCTC	2 cut(s)	210, 403
EcoT38I	GRGCYC	2 cut(s)	212, 405
FaeI	CATG	1 cut(s)	409
FaiI	YATR	4 cut(s)	105, 407, 449, 451
FatI	CATG	1 cut(s)	405
FauNDI	CATATG	1 cut(s)	449
FbaI	TGATCA	2 cut(s)	276, 435
Fnu4HI	GCNGC	3 cut(s)	291, 332, 366
FriOI	GRGCYC	2 cut(s)	212, 405
Fsp4HI	GCNGC	3 cut(s)	291, 332, 366
FspBI	CTAG	2 cut(s)	371, 481
GluI	GCNGC	3 cut(s)	291, 332, 366
HaeIII	GGCC	1 cut(s)	415
Hin1II	CATG	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	2 cut(s)	68, 471
HinfI	GANTC	2 cut(s)	181, 343
HphI	GGTGA	4 cut(s)	48, 352, 430, 445
Hpy166II	GTNNAC	2 cut(s)	160, 355
Hpy188I	TCNGA	5 cut(s)	7, 75, 167, 214, 348
Hpy8I	GTNNAC	2 cut(s)	160, 355
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	19, 82, 242, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 299
HpyF3I	CTNAG	3 cut(s)	211, 226, 298
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	409
Ksp22I	TGATCA	2 cut(s)	276, 435
Kzo9I	GATC	2 cut(s)	276, 435
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	3 cut(s)	170, 341, 405
Lsp1109I	GCAGC	3 cut(s)	302, 318, 352
MaeI	CTAG	2 cut(s)	371, 481
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	115, 379
MalI	GATC	2 cut(s)	278, 437
MboI	GATC	2 cut(s)	276, 435
MboII	GAAGA	1 cut(s)	45
MhlI	GDGCHC	4 cut(s)	144, 191, 212, 405
MluCI	AATT	3 cut(s)	33, 236, 267
MnlI	CCTC	6 cut(s)	42, 307, 405, 426, 447, 477
MseI	TTAA	3 cut(s)	36, 150, 317
MspA1I	CMGCKG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	16, 299
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	2 cut(s)	276, 435
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	2 cut(s)	426, 458
NmuCI	GTSAC	2 cut(s)	115, 379
PceI	AGGCCT	1 cut(s)	415
PctI	GAATGC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	181, 343
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	292, 333, 367
PshBI	ATTAAT	1 cut(s)	317
Psp124BI	GAGCTC	2 cut(s)	212, 405
PspN4I	GGNNCC	2 cut(s)	426, 458
PspPI	GGNCC	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SacI	GAGCTC	2 cut(s)	212, 405
SaqAI	TTAA	3 cut(s)	36, 150, 317
SatI	GCNGC	3 cut(s)	291, 332, 366
Sau3AI	GATC	2 cut(s)	276, 435
Sau96I	GGNCC	1 cut(s)	425
SduI	GDGCHC	4 cut(s)	144, 191, 212, 405
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	3 cut(s)	33, 236, 267
SseBI	AGGCCT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	371, 481
SstI	GAGCTC	2 cut(s)	212, 405
StuI	AGGCCT	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	42
TasI	AATT	3 cut(s)	33, 236, 267
TfiI	GAWTC	2 cut(s)	181, 343
Tru1I	TTAA	3 cut(s)	36, 150, 317
Tru9I	TTAA	3 cut(s)	36, 150, 317
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	2 cut(s)	115, 379
TseI	GCWGC	3 cut(s)	290, 331, 365
Tsp45I	GTSAC	2 cut(s)	115, 379
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	425
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	2 cut(s)	371, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.