RchiOBHm_Chr4g0388541

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
3770380 .. 3772493
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36175

Sequence Viewer

Length: 2046 bp
ATGAGCCAAATCAGCCAAGACACCATTGAAAAGACACCTCTGCAAGCACGTCTAGACAAGTTAACATCGTCGATGGGTAAAGTTGGTTTGGCAGTTGCTTTCATTGTTCTTGTAGTCATGTTGGTCCGGTACTTCACAGGGAATACAGAGAATGAGAATGGAAACAAAATGTTCAATGGCAGCAAGACAAAATGCAATGGCATAATAAATGCTGTCATTGGAATTGTATCAGCTGCACTTACAATCGTTGAGGTGGCAATTCCAAAAGGTATACCATTAGCTGTGACTCTCAGTCTTGCCTACTCCATGAGGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTACTTGTGAGACCATGGGATCTGCTAAAACAATTTGTACCTACAAAACAGGTACACTGACCATGAACCAGATGAAGGTAACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCCCCTTACGTTCTCAACTTGATCCAAGAAGGATCCAACGGAAAAGCTATTCTTTCATGGGCTGTACATGGGTGGAAGATGGATATGGAGAAAGTGGTGAAGAGTTGGAGGATTCTCCACGTTGAAGCCTTTAATTCGAAGAAGAAACAGAGTGGAGTTATGGTGAAGAGAAAGGCAGATAACTCGATCCATGTACACCGGAAAGGAGCAGCAGAGATGATACTTGCAATGTGCACAAGTTACTACAATGCGTCTGGACTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAGCATATTATTAAAGGTATGGCAGCTAGCAGCCTCAGCATAGCATTTGCACATAAACAAGTTCCAGCAGAAGAGCAACTAAATGCAGACCAGAAAGTTTTGCTAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGGCCTTAAAGATCTATGTCGTTCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTTGGAGCAGTCATAGAAGCTGTCGAATTCCGCAACTACATGCTAGAAGAGAGATCGGAGAAAGTTGAGAAAATTTCAGTGATGGCAAGATCTTCTCCGTTTGATAAGCTTCTAATGGTGCAGTGCTTGGAACATAAAGGTCATGTAGTTGCAGTGACCGGTGATGGCCCCAATGATGCACCAGCATTGAAAGAAGCTGATATAGGACTCTCTATGGGGATTCAAGGAACAGAAGTGGCAAAAGAGAGCTCAGATATTGTGATCCTGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGCTGTGGAGAAGATGTGTGTACAATAATATCCAGAAGTTCATACAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGGGGCAGTTTCAGAAGGTCAAGTCCCATTAACAGAAGTTCAGTTATTGTGGGTCACCTTGATCATCGACACACTTGGACCTCTTTCTCTTGCCACAGAAAAACCCACAACAGAACTTCTGGAGAAGCCACCAGTGGGAAGGACGACACCTCTCATCACAAACATCATGTGGAGGAATCTCTTGCCTCAAGCACTGCACCAAATAAAAGTCCTCTTGATCTTACAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGAAAAGGACGCAATGATCTTCAACACTTTTGTGCTTTGCCAGGTTTACAATGTGTTCAATGCAAGGAAGCTAGAGACGAAGAATGTCTTCGAGGGAATACACACCAAGAAGTTGTTTATGGGGATCATTGAGGTGATAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAACGGGGCGTATGCATTAGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTCGTCAAGTTTATACCTGTGCCAGAGAAACCCATATTCAGCTATCTGAATTTCATACTACATTAA

Protein Analysis

681

Amino Acids

75.51

Weight (kDa)

8.97

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 186 - 314 6.4e-18 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 267 - 424 7.4e-11 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 495 - 665 2.5e-37 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 2 cut(s) 1020, 1102
AclWI GGATC 7 cut(s) 376, 499, 510, 523, 664, 1327, 1853
AcoI YGGCCR 1 cut(s) 1967
AcsI RAATTY 4 cut(s) 1097, 1143, 1898, 2029
AcuI CTGAAG 2 cut(s) 1338, 1853
AfaI GTAC 6 cut(s) 131, 388, 403, 549, 678, 1391
AfiI CCNNNNNNNGG 2 cut(s) 424, 1595
AgeI ACCGGT 1 cut(s) 1229
AgsI TTSAA 9 cut(s) 29, 175, 608, 962, 1261, 1295, 1744, 1780, 1921
AhdI GACNNNNNGTC 1 cut(s) 291
AjiI CACGTC 1 cut(s) 50
AjnI CCWGG 3 cut(s) 1057, 1335, 1761
AleI CACNNNNGTG 1 cut(s) 1751
Alw21I GWGCWC 2 cut(s) 719, 1322
Alw26I GTCTC 3 cut(s) 353, 999, 1790
Alw44I GTGCAC 1 cut(s) 715
AlwI GGATC 7 cut(s) 376, 499, 510, 523, 664, 1327, 1853
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 4 cut(s) 919, 1055, 1237, 1967
ApaLI GTGCAC 1 cut(s) 715
ApeKI GCWGC 6 cut(s) 180, 233, 692, 803, 810, 1439
ApoI RAATTY 4 cut(s) 1097, 1143, 1898, 2029
AsiGI ACCGGT 1 cut(s) 1229
Asp700I GAANNNNTTC 1 cut(s) 1808
AspS9I GGNCC 5 cut(s) 124, 337, 919, 1238, 1538
AsuHPI GGTGA 8 cut(s) 592, 658, 994, 1009, 1244, 1417, 1507, 1867
AsuII TTCGAA 1 cut(s) 620
AsuNHI GCTAGC 1 cut(s) 806
AvaII GGWCC 3 cut(s) 124, 337, 1538
BaeGI GKGCMC 1 cut(s) 719
BalI TGGCCA 1 cut(s) 1969
BamHI GGATCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 1322
BbsI GAAGAC 1 cut(s) 1801
Bbv12I GWGCWC 2 cut(s) 719, 1322
BbvCI CCTCAGC 1 cut(s) 815
BbvI GCAGC 6 cut(s) 192, 220, 704, 815, 822, 1451
BccI CCATC 7 cut(s) 67, 313, 556, 887, 1147, 1229, 1873
BcgI CGANNNNNNTGC 4 cut(s) 648, 682, 1351, 1385
BciT130I CCWGG 3 cut(s) 1059, 1337, 1763
BciVI GTATCC 1 cut(s) 1041
BclI TGATCA 2 cut(s) 1449, 1521
BcoDI GTCTC 3 cut(s) 353, 999, 1790
BfaI CTAG 4 cut(s) 53, 807, 1115, 1793
BfuI GTATCC 1 cut(s) 1041
BglII AGATCT 2 cut(s) 928, 1160
BisI GCNGC 6 cut(s) 181, 234, 693, 804, 811, 1440
BlsI GCNGC 6 cut(s) 182, 235, 694, 805, 812, 1441
Bme1390I CCNGG 3 cut(s) 1059, 1337, 1763
Bme18I GGWCC 3 cut(s) 124, 337, 1538
BmeRI GACNNNNNGTC 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 5 cut(s) 124, 337, 919, 1238, 1538
BmiI GGNNCC 2 cut(s) 517, 1240
BmrFI CCNGG 3 cut(s) 1059, 1337, 1763
BmsI GCATC 1 cut(s) 1237
BmtI GCTAGC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 1801
BpmI CTGGAG 1 cut(s) 1601
Bpu10I CCTNAGC 1 cut(s) 815
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 1632, 1877
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 5 cut(s) 126, 339, 681, 1001, 1229
BsaXI ACNNNNNCTCC 6 cut(s) 630, 660, 996, 1026, 1369, 1399
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 1595
Bse118I RCCGGY 1 cut(s) 1229
Bse1I ACTGG 1 cut(s) 1592
Bse3DI GCAATG 4 cut(s) 202, 339, 717, 1740
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 3 cut(s) 1059, 1337, 1763
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 763, 1345
BseLI CCNNNNNNNGG 2 cut(s) 424, 1595
BseMI GCAATG 4 cut(s) 202, 339, 717, 1740
BseMII CTCAG 4 cut(s) 304, 829, 1066, 1335
BseNI ACTGG 1 cut(s) 1592
BseRI GAGGAG 1 cut(s) 325
BseSI GKGCMC 1 cut(s) 719
BseXI GCAGC 6 cut(s) 192, 220, 704, 815, 822, 1451
BsgI GTGCAG 3 cut(s) 219, 1211, 1640
BshFI GGCC 4 cut(s) 921, 1057, 1239, 1969
BshTI ACCGGT 1 cut(s) 1229
BsiHKAI GWGCWC 2 cut(s) 719, 1322
BsiSI CCGG 5 cut(s) 127, 340, 682, 1002, 1230
BslFI GGGAC 3 cut(s) 924, 1469, 1941
BslI CCNNNNNNNGG 2 cut(s) 424, 1595
BsmAI GTCTC 3 cut(s) 353, 999, 1790
BsmBI CGTCTC 1 cut(s) 1790
BsmFI GGGAC 3 cut(s) 924, 1469, 1941
BsnI GGCC 4 cut(s) 921, 1057, 1239, 1969
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 719, 1322
Bsp13I TCCGGA 1 cut(s) 339
Bsp1407I TGTACA 3 cut(s) 547, 676, 1389
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 2 cut(s) 1020, 1102
BspANI GGCC 4 cut(s) 921, 1057, 1239, 1969
BspCNI CTCAG 4 cut(s) 303, 828, 1065, 1334
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 517, 1240
BspOI GCTAGC 1 cut(s) 810
BspPI GGATC 7 cut(s) 376, 499, 510, 523, 664, 1327, 1853
BspQI GCTCTTC 1 cut(s) 846
BspT104I TTCGAA 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 4 cut(s) 202, 339, 717, 1740
BsrFI RCCGGY 1 cut(s) 1229
BsrGI TGTACA 3 cut(s) 547, 676, 1389
BsrI ACTGG 1 cut(s) 1592
BssAI RCCGGY 1 cut(s) 1229
BssECI CCNNGG 1 cut(s) 363
BssNAI GTATAC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 363
Bst1107I GTATAC 1 cut(s) 272
Bst2UI CCWGG 3 cut(s) 1059, 1337, 1763
Bst4CI ACNGT 2 cut(s) 1366, 1429
Bst6I CTCTTC 4 cut(s) 578, 644, 846, 1113
BstAUI TGTACA 3 cut(s) 547, 676, 1389
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 45, 808
BstDEI CTNAG 5 cut(s) 290, 432, 815, 1052, 1321
BstDSI CCRYGG 1 cut(s) 363
BstEII GGTNACC 1 cut(s) 1513
BstF5I GGATG 2 cut(s) 763, 1345
BstMAI GTCTC 3 cut(s) 353, 999, 1790
BstMWI GCNNNNNNNGC 3 cut(s) 12, 816, 1358
BstNI CCWGG 3 cut(s) 1059, 1337, 1763
BstNSI RCATGY 2 cut(s) 1072, 1114
BstPI GGTNACC 1 cut(s) 1513
BstSCI CCNGG 3 cut(s) 1057, 1335, 1761
BstSLI GKGCMC 1 cut(s) 719
BstV1I GCAGC 6 cut(s) 192, 220, 704, 815, 822, 1451
BstV2I GAAGAC 1 cut(s) 1801
BstX2I RGATCY 4 cut(s) 368, 515, 928, 1160
BstXI CCANNNNNNTGG 1 cut(s) 1977
BstYI RGATCY 4 cut(s) 368, 515, 928, 1160
BstZ17I GTATAC 1 cut(s) 272
BsuI GTATCC 1 cut(s) 1041
BsuRI GGCC 4 cut(s) 921, 1057, 1239, 1969
BtgI CCRYGG 1 cut(s) 363
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 763, 1345
BtsI GCAGTG 3 cut(s) 1199, 1230, 1652
BtsIMutI CAGTG 8 cut(s) 404, 1035, 1155, 1199, 1230, 1599, 1652, 1720
Cac8I GCNNGC 2 cut(s) 45, 808
Cfr10I RCCGGY 1 cut(s) 1229
Cfr13I GGNCC 5 cut(s) 124, 337, 919, 1238, 1538
CseI GACGC 2 cut(s) 723, 1739
Csp6I GTAC 6 cut(s) 130, 387, 402, 548, 677, 1390
CspAI ACCGGT 1 cut(s) 1229
CviQI GTAC 6 cut(s) 130, 387, 402, 548, 677, 1390
DdeI CTNAG 5 cut(s) 290, 432, 815, 1052, 1321
DriI GACNNNNNGTC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 1967
Eam1104I CTCTTC 4 cut(s) 578, 644, 846, 1113
Eam1105I GACNNNNNGTC 1 cut(s) 291
EarI CTCTTC 4 cut(s) 578, 644, 846, 1113
Ecl136II GAGCTC 1 cut(s) 1320
Eco130I CCWWGG 1 cut(s) 363
Eco147I AGGCCT 1 cut(s) 1057
Eco24I GRGCYC 1 cut(s) 1322
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 3 cut(s) 124, 337, 1538
Eco53kI GAGCTC 1 cut(s) 1320
Eco57I CTGAAG 2 cut(s) 1338, 1853
Eco91I GGTNACC 1 cut(s) 1513
EcoICRI GAGCTC 1 cut(s) 1320
EcoO65I GGTNACC 1 cut(s) 1513
EcoRI GAATTC 1 cut(s) 1097
EcoRII CCWGG 3 cut(s) 1057, 1335, 1761
EcoT14I CCWWGG 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 1946
EcoT38I GRGCYC 1 cut(s) 1322
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 1790
FalI AAGNNNNNCTT 4 cut(s) 519, 551, 1793, 1825
FaqI GGGAC 3 cut(s) 924, 1469, 1941
FbaI TGATCA 2 cut(s) 1449, 1521
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 6 cut(s) 181, 234, 693, 804, 811, 1440
FokI GGATG 2 cut(s) 770, 1352
FriOI GRGCYC 1 cut(s) 1322
Fsp4HI GCNGC 6 cut(s) 181, 234, 693, 804, 811, 1440
FspBI CTAG 4 cut(s) 53, 807, 1115, 1793
GluI GCNGC 6 cut(s) 181, 234, 693, 804, 811, 1440
GsuI CTGGAG 1 cut(s) 1601
HaeIII GGCC 4 cut(s) 921, 1057, 1239, 1969
HapII CCGG 5 cut(s) 127, 340, 682, 1002, 1230
HgaI GACGC 2 cut(s) 723, 1739
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 2 cut(s) 468, 1178
HinfI GANTC 6 cut(s) 286, 452, 595, 1278, 1291, 1636
HpaI GTTAAC 1 cut(s) 63
HpaII CCGG 5 cut(s) 127, 340, 682, 1002, 1230
HphI GGTGA 8 cut(s) 592, 658, 994, 1009, 1244, 1417, 1507, 1867
Hpy166II GTNNAC 8 cut(s) 63, 272, 404, 679, 717, 985, 1390, 1768
Hpy188I TCNGA 4 cut(s) 1129, 1324, 1474, 2028
Hpy188III TCNNGA 8 cut(s) 53, 340, 738, 1064, 1402, 1580, 1675, 1894
Hpy8I GTNNAC 8 cut(s) 63, 272, 404, 679, 717, 985, 1390, 1768
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 4 cut(s) 418, 506, 1469, 1593
HpyCH4III ACNGT 2 cut(s) 1366, 1429
HpyCH4IV ACGT 4 cut(s) 49, 492, 603, 987
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 816, 1358
HpyF3I CTNAG 5 cut(s) 290, 432, 815, 1052, 1321
HpySE526I ACGT 4 cut(s) 49, 492, 603, 987
Kpn2I TCCGGA 1 cut(s) 339
Ksp22I TGATCA 2 cut(s) 1449, 1521
KspAI GTTAAC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 2 cut(s) 689, 1076
Lsp1109I GCAGC 6 cut(s) 192, 220, 704, 815, 822, 1451
LweI GCATC 1 cut(s) 1237
MaeI CTAG 4 cut(s) 53, 807, 1115, 1793
MaeII ACGT 4 cut(s) 49, 492, 603, 987
MaeIII GTNAC 5 cut(s) 283, 427, 722, 1225, 1513
MfeI CAATTG 1 cut(s) 1971
MflI RGATCY 4 cut(s) 368, 515, 928, 1160
MhlI GDGCHC 2 cut(s) 719, 1322
MlsI TGGCCA 1 cut(s) 1969
MluNI TGGCCA 1 cut(s) 1969
MlyI GAGTC 2 cut(s) 280, 1272
MmeI TCCRAC 3 cut(s) 543, 569, 1444
Mox20I TGGCCA 1 cut(s) 1969
Mph1103I ATGCAT 1 cut(s) 1946
MroI TCCGGA 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 1808
MscI TGGCCA 1 cut(s) 1969
MseI TTAA 7 cut(s) 62, 615, 747, 792, 924, 1490, 2044
MslI CAYNNNNRTG 2 cut(s) 1751, 1853
Msp20I TGGCCA 1 cut(s) 1969
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 5 cut(s) 127, 340, 682, 1002, 1230
MspR9I CCNGG 3 cut(s) 1059, 1337, 1763
MunI CAATTG 1 cut(s) 1971
MvaI CCWGG 3 cut(s) 1059, 1337, 1763
MwoI GCNNNNNNNGC 3 cut(s) 12, 816, 1358
NcoI CCATGG 1 cut(s) 363
NheI GCTAGC 1 cut(s) 806
NlaIV GGNNCC 2 cut(s) 517, 1240
NmuCI GTSAC 3 cut(s) 283, 1225, 1513
NsiI ATGCAT 1 cut(s) 1946
NspI RCATGY 2 cut(s) 1072, 1114
NspV TTCGAA 1 cut(s) 620
OliI CACNNNNGTG 1 cut(s) 1751
PceI AGGCCT 1 cut(s) 1057
PciSI GCTCTTC 1 cut(s) 846
PdmI GAANNNNTTC 1 cut(s) 1808
PfeI GAWTC 4 cut(s) 452, 595, 1291, 1636
PfoI TCCNGGA 1 cut(s) 1335
PinAI ACCGGT 1 cut(s) 1229
PkrI GCNGC 6 cut(s) 182, 235, 694, 805, 812, 1441
PleI GAGTC 2 cut(s) 280, 1272
PpsI GAGTC 2 cut(s) 280, 1272
Psp124BI GAGCTC 1 cut(s) 1322
Psp6I CCWGG 3 cut(s) 1057, 1335, 1761
PspEI GGTNACC 1 cut(s) 1513
PspGI CCWGG 3 cut(s) 1057, 1335, 1761
PspN4I GGNNCC 2 cut(s) 517, 1240
PspPI GGNCC 5 cut(s) 124, 337, 919, 1238, 1538
PsuI RGATCY 4 cut(s) 368, 515, 928, 1160
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 6 cut(s) 131, 388, 403, 549, 678, 1391
RsaNI GTAC 6 cut(s) 130, 387, 402, 548, 677, 1390
RseI CAYNNNNRTG 2 cut(s) 1751, 1853
SacI GAGCTC 1 cut(s) 1322
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 7 cut(s) 62, 615, 747, 792, 924, 1490, 2044
SatI GCNGC 6 cut(s) 181, 234, 693, 804, 811, 1440
Sau96I GGNCC 5 cut(s) 124, 337, 919, 1238, 1538
SchI GAGTC 2 cut(s) 280, 1272
ScrFI CCNGG 3 cut(s) 1059, 1337, 1763
SduI GDGCHC 2 cut(s) 719, 1322
SfaNI GCATC 1 cut(s) 1237
SfuI TTCGAA 1 cut(s) 620
SinI GGWCC 3 cut(s) 124, 337, 1538
SmiMI CAYNNNNRTG 2 cut(s) 1751, 1853
SmlI CTYRAG 2 cut(s) 1647, 1892
SmoI CTYRAG 2 cut(s) 1647, 1892
SseBI AGGCCT 1 cut(s) 1057
SsiI CCGC 2 cut(s) 1020, 1102
SspMI CTAG 4 cut(s) 53, 807, 1115, 1793
SstI GAGCTC 1 cut(s) 1322
StuI AGGCCT 1 cut(s) 1057
StyD4I CCNGG 3 cut(s) 1057, 1335, 1761
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 1366, 1429
TaiI ACGT 4 cut(s) 52, 495, 606, 990
TaqI TCGA 6 cut(s) 71, 620, 668, 1095, 1527, 1812
TatI WGTACW 3 cut(s) 547, 676, 1389
TfiI GAWTC 4 cut(s) 452, 595, 1291, 1636
Tru1I TTAA 7 cut(s) 62, 615, 747, 792, 924, 1490, 2044
Tru9I TTAA 7 cut(s) 62, 615, 747, 792, 924, 1490, 2044
TscAI CASTG 8 cut(s) 411, 1042, 1155, 1199, 1230, 1599, 1659, 1720
TseFI GTSAC 3 cut(s) 283, 1225, 1513
TseI GCWGC 6 cut(s) 180, 233, 692, 803, 810, 1439
Tsp45I GTSAC 3 cut(s) 283, 1225, 1513
TspDTI ATGAA 8 cut(s) 91, 428, 437, 465, 528, 780, 1399, 2023
TspGWI ACGGA 2 cut(s) 537, 1158
TspRI CASTG 8 cut(s) 411, 1042, 1155, 1199, 1230, 1599, 1659, 1720
VneI GTGCAC 1 cut(s) 715
VpaK11BI GGWCC 3 cut(s) 124, 337, 1538
XapI RAATTY 4 cut(s) 1097, 1143, 1898, 2029
XbaI TCTAGA 1 cut(s) 52
XceI RCATGY 2 cut(s) 1072, 1114
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 1808
XspI CTAG 4 cut(s) 53, 807, 1115, 1793
Zsp2I ATGCAT 1 cut(s) 1946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.