Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

16054648 .. 16055570

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1186200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATACAAAGTTGTGCTAAAAGAATAGGGATTGCCCTGTTAGGACTTGTGGATCTTAATGATCCATGTCGACTAGGAGTGAAGACATCAGTTCGAGACTGTCAGAAGGCAGGAGTGAAGATCAAAATGATCACTGGTGACAATGTTTTCACTGCAAAAGCCATAGCCACCGAATGTGGGATTCTCAAGCATGATGAAGATATGTCAAGTGGAGCAGTGATAGAAGGCATGCAATTTCGCAATTACACACCTCAAGAGAGGAGGGAAAAGGTAGATAAAATCTGTGTAATGGCAAGGTCCTCTCCGTCTGATAAACTTCTAATGGTGCAATGCTTGAAAGAGAGAGGTCATGTGGTTGTCTTCAATGAGTTCAACGCAAGGAAGCTTGAGAAAAATGTCTTCAAGGGAACCCGCAAACTGTATTTGGGGATCATTGCAGTGACGATTGTCCTCCAAGTGCTGATGCTGGAATTTCTGAATAAATTTTCCGATAGGGAGAGGTTGCATTGGAAGCAATGGCTTGCATGTTTTGGAATTGTAGCTTTCTCCTGGCCAATTGGTTGGCTTGCCAAGCGGGTGGATTTTCAAGTCCTATGGGAACTGCAGCTTTCTCTTGCTTGTAAACTCTTTTGCAAAGGCAGTCTTCACTTAGACGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

221

Amino Acids

24.99

Weight (kDa)

9.24

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	120 - 192	1.6e-10	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	2 cut(s)	412, 574
AclWI	GGATC	3 cut(s)	56, 60, 437
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	470, 482
AfiI	CCNNNNNNNGG	1 cut(s)	177
AgsI	TTSAA	5 cut(s)	337, 364, 373, 403, 587
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	3 cut(s)	385, 542, 607
AluI	AGCT	3 cut(s)	385, 542, 607
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	3 cut(s)	56, 60, 437
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	2 cut(s)	470, 482
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	553
BbsI	GAAGAC	4 cut(s)	89, 352, 391, 635
BbvI	GCAGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	550
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	602
BisI	GCNGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	606
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	453
BoxI	GACNNNNGTC	1 cut(s)	446
BpiI	GAAGAC	4 cut(s)	89, 352, 391, 635
BpuEI	CTTGAG	3 cut(s)	170, 237, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	3 cut(s)	335, 432, 521
BseBI	CCWGG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMI	GCAATG	3 cut(s)	335, 432, 521
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	616
BshFI	GGCC	1 cut(s)	553
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	553
Bsp143I	GATC	5 cut(s)	52, 61, 120, 129, 429
BspACI	CCGC	2 cut(s)	412, 574
BspANI	GGCC	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	3 cut(s)	56, 60, 437
BsrDI	GCAATG	3 cut(s)	335, 432, 521
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	5 cut(s)	52, 61, 120, 129, 429
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	2 cut(s)	101, 420
BstC8I	GCNNGC	3 cut(s)	230, 522, 567
BstDEI	CTNAG	1 cut(s)	649
BstKTI	GATC	5 cut(s)	55, 64, 123, 132, 432
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	5 cut(s)	52, 61, 120, 129, 429
BstMWI	GCNNNNNNNGC	2 cut(s)	511, 571
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	2 cut(s)	232, 528
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	4 cut(s)	89, 352, 391, 635
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	2 cut(s)	561, 577
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	553
BtsI	GCAGTG	3 cut(s)	150, 222, 444
BtsIMutI	CAGTG	4 cut(s)	132, 150, 222, 444
Cac8I	GCNNGC	3 cut(s)	230, 522, 567
Cfr13I	GGNCC	1 cut(s)	297
CviAII	CATG	5 cut(s)	66, 191, 229, 350, 525
CviJI	RGCY	8 cut(s)	161, 167, 385, 520, 542, 553, 565, 607
CviKI_1	RGCY	8 cut(s)	161, 167, 385, 520, 542, 553, 565, 607
DdeI	CTNAG	1 cut(s)	649
DpnI	GATC	5 cut(s)	54, 63, 122, 131, 431
DpnII	GATC	5 cut(s)	52, 61, 120, 129, 429
EaeI	YGGCCR	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	548
FaeI	CATG	5 cut(s)	69, 194, 232, 353, 528
FaiI	YATR	8 cut(s)	67, 164, 192, 203, 230, 351, 526, 595
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FatI	CATG	5 cut(s)	65, 190, 228, 349, 524
FauI	CCCGC	2 cut(s)	419, 567
FbaI	TGATCA	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	605
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	605
HaeIII	GGCC	1 cut(s)	553
Hin1II	CATG	5 cut(s)	69, 194, 232, 353, 528
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	181
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	71, 623
Hpy188I	TCNGA	4 cut(s)	105, 310, 477, 490
Hpy188III	TCNNGA	2 cut(s)	95, 254
Hpy8I	GTNNAC	2 cut(s)	71, 623
HpyAV	CCTTC	2 cut(s)	100, 218
HpyCH4III	ACNGT	2 cut(s)	101, 420
HpyCH4V	TGCA	8 cut(s)	155, 232, 328, 437, 505, 524, 604, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	511, 571
HpyF3I	CTNAG	1 cut(s)	649
Hsp92II	CATG	5 cut(s)	69, 194, 232, 353, 528
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	52, 61, 120, 129, 429
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	6 cut(s)	50, 96, 120, 452, 535, 562
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	137, 439
MalI	GATC	5 cut(s)	54, 63, 122, 131, 431
MboI	GATC	5 cut(s)	52, 61, 120, 129, 429
MboII	GAAGA	6 cut(s)	94, 130, 209, 352, 391, 635
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	553
MluCI	AATT	6 cut(s)	233, 241, 470, 482, 534, 555
MluNI	TGGCCA	1 cut(s)	553
MnlI	CCTC	7 cut(s)	252, 255, 261, 310, 338, 461, 492
Mox20I	TGGCCA	1 cut(s)	553
MscI	TGGCCA	1 cut(s)	553
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	550
MunI	CAATTG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	2 cut(s)	511, 571
NdeII	GATC	5 cut(s)	52, 61, 120, 129, 429
NlaIII	CATG	5 cut(s)	69, 194, 232, 353, 528
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	137, 439
NspI	RCATGY	2 cut(s)	232, 528
PaeI	GCATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	606
PpuMI	RGGWCCY	1 cut(s)	297
PshAI	GACNNNNGTC	1 cut(s)	446
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	297
PspPPI	RGGWCCY	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	437
SalI	GTCGAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	5 cut(s)	52, 61, 120, 129, 429
Sau96I	GGNCC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	550
SetI	ASST	8 cut(s)	253, 273, 299, 349, 387, 503, 544, 609
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	3 cut(s)	185, 252, 386
SmoI	CTYRAG	3 cut(s)	185, 252, 386
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	6 cut(s)	233, 241, 470, 482, 534, 555
SsiI	CCGC	2 cut(s)	412, 574
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	548
TaaI	ACNGT	2 cut(s)	101, 420
TaqI	TCGA	2 cut(s)	70, 94
TasI	AATT	6 cut(s)	233, 241, 470, 482, 534, 555
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	4 cut(s)	139, 157, 222, 444
TseFI	GTSAC	2 cut(s)	137, 439
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	2 cut(s)	137, 439
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	4 cut(s)	139, 157, 222, 444
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	2 cut(s)	470, 482
XceI	RCATGY	2 cut(s)	232, 528
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.