Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

18318368 .. 18318999

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1201500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAACAAGCAGTCTCCGATGCATTGCTTTGGCACACAAACAAGTTCAGGATAAGCATAATAATGACGAAAAGAAGTACAAGAAGCTCGAAGAAAGCAGCTTGATCCTATTAGGATTGGTAGGTCTAAAGGATCCATATAGGCCAGGAGTGAAGGAAGCAGTAGAAGCTTGCCAGTTTGTCGAGGTGCAGGAAGCCCAAGAAGCAGTGGTAGAAGGTGTAGAATTTCGCAACTACACACTGGAACAAAGAATGCAGAAAGGCCAGGTAGTTGCCAAGGAAGCGGACATAGGACTCTCGATGAGGATTCAGGGCACCGAAGTTGCCAAGAAGAGCTCAGACATTGTCATTTTAGATGACAATTTTGCAACTTCGGTAATTGTTTTAAGATGGGGAAGAGTAGTTTCTGCCAACATCCAAAAGTTTGTCCACTTCCAGCTCACAATAAATGTTGCAACTCTTGTGATCAACTTTGTGCAACTGCCTCGGTCAGTGAATGACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

6.84

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	1 - 49	8.1e-08	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	3 cut(s)	100, 128, 141
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	145, 264
AluBI	AGCT	5 cut(s)	88, 102, 170, 336, 439
AluI	AGCT	5 cut(s)	88, 102, 170, 336, 439
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	100, 128, 141
AoxI	GGCC	2 cut(s)	143, 262
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	384
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	2 cut(s)	147, 266
BclI	TGATCA	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	20
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	147, 266
BmiI	GGNNCC	2 cut(s)	135, 316
BmrFI	CCNGG	2 cut(s)	147, 266
BmsI	GCATC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	276, 485
Bse1I	ACTGG	2 cut(s)	175, 246
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	147, 266
BseDI	CCNNGG	2 cut(s)	276, 485
BseGI	GGATG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	175, 246
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	145, 264
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	145, 264
Bsp1286I	GDGCHC	2 cut(s)	317, 338
Bsp143I	GATC	3 cut(s)	105, 133, 465
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	145, 264
BspCNI	CTCAG	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	135, 316
BspPI	GGATC	3 cut(s)	100, 128, 141
BspQI	GCTCTTC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	175, 246
BssECI	CCNNGG	2 cut(s)	276, 485
BssMI	GATC	3 cut(s)	105, 133, 465
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	147, 266
Bst6I	CTCTTC	2 cut(s)	326, 391
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	3 cut(s)	108, 136, 468
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	3 cut(s)	105, 133, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 203, 281
BstNI	CCWGG	2 cut(s)	147, 266
BstSCI	CCNGG	2 cut(s)	145, 264
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	145, 264
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 239, 498
Cac8I	GCNNGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	79
CviJI	RGCY	8 cut(s)	88, 102, 145, 170, 197, 264, 336, 439
CviKI_1	RGCY	8 cut(s)	88, 102, 145, 170, 197, 264, 336, 439
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	3 cut(s)	107, 135, 467
DpnII	GATC	3 cut(s)	105, 133, 465
Eam1104I	CTCTTC	2 cut(s)	326, 391
EarI	CTCTTC	2 cut(s)	326, 391
Ecl136II	GAGCTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	145, 264
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	276
FaiI	YATR	4 cut(s)	60, 139, 141, 290
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	145, 264
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	2 cut(s)	294, 307
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	20, 340
Hpy188III	TCNNGA	2 cut(s)	50, 298
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	2 cut(s)	148, 209
HpyCH4V	TGCA	6 cut(s)	24, 190, 256, 368, 455, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 203, 281
HpyF3I	CTNAG	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	105, 133, 465
LguI	GCTCTTC	1 cut(s)	326
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	11
MalI	GATC	3 cut(s)	107, 135, 467
MboI	GATC	3 cut(s)	105, 133, 465
MboII	GAAGA	3 cut(s)	104, 343, 408
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	317, 338
MluCI	AATT	3 cut(s)	224, 361, 378
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	3 cut(s)	178, 297, 495
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	2 cut(s)	386, 505
MslI	CAYNNNNRTG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	147, 266
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	147, 266
MwoI	GCNNNNNNNGC	3 cut(s)	167, 203, 281
NdeII	GATC	3 cut(s)	105, 133, 465
NlaIV	GGNNCC	2 cut(s)	135, 316
NsiI	ATGCAT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	307
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	145, 264
PspGI	CCWGG	2 cut(s)	145, 264
PspN4I	GGNNCC	2 cut(s)	135, 316
PsuI	RGATCY	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	386, 505
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	3 cut(s)	105, 133, 465
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	147, 266
SduI	GDGCHC	2 cut(s)	317, 338
SfaNI	GCATC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	224, 361, 378
SsiI	CCGC	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	145, 264
StyI	CCWWGG	1 cut(s)	276
TaqI	TCGA	3 cut(s)	90, 183, 299
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	3 cut(s)	224, 361, 378
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	386, 505
Tru9I	TTAA	2 cut(s)	386, 505
TscAI	CASTG	3 cut(s)	213, 246, 498
TseI	GCWGC	1 cut(s)	99
TspRI	CASTG	3 cut(s)	213, 246, 498
Tth111I	GACNNNGTC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.