Rmu_sc0002694.1_g000002

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002694.1
Physical Location & Seq
Reverse (-)
17126 .. 19124
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002694.1_g000002.1.cds

Sequence Viewer

Length: 519 bp
atggcagcaagcagtttgcgatgtgttgccattgcatacagaacatatgaattggacaaagttcctactgaggaagagaatttaagtcaatgggctttacctgaagataatctagagttgcttgctatcgtgggtataaaggatccttgtcgccttggggtcaaagatgcagtgagattatgcacagaagctggtgttaaggtacgcatggtcactggagacaaccttcagacagcaaaagcaatcgcattagagtgtggaattctttgttctgttgaggatgctactgagcctaatatcattgaaggaaaaacattccgtgaattatctgaaaaagaaagagaagaagttgcccagaaaataacggtaatggggagatcttcccctaatgacaagttattgcttgtgcaagcattacggaaggggggagatgttgttgcagtaacaggagatggcactaatgatgctcctgcccttcatgaggtatgtcatctttgtgaatttaatatttttatatga

Protein Analysis

172

Amino Acids

18.74

Weight (kDa)

4.8

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 137, 150
AcsI RAATTY 3 cut(s) 79, 261, 500
AcuI CTGAAG 2 cut(s) 123, 212
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 2 cut(s) 137, 150
AlwNI CAGNNNCTG 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 79, 261, 500
BamHI GGATCC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 113
BglII AGATCT 1 cut(s) 377
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 3 cut(s) 157, 271, 454
BpmI CTGGAG 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 60, 279
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 142, 377
BspCNI CTCAG 2 cut(s) 61, 280
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 2 cut(s) 137, 150
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 2 cut(s) 142, 377
BssT1I CCWWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 3 cut(s) 10, 123, 411
BstDEI CTNAG 2 cut(s) 69, 288
BstENI CCTNNNNNAGG 1 cut(s) 479
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 145, 380
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 142, 377
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 142, 377
BstYI RGATCY 2 cut(s) 142, 377
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 177, 213
Cac8I GCNNGC 3 cut(s) 10, 123, 411
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 478
Csp6I GTAC 1 cut(s) 203
CviAII CATG 2 cut(s) 208, 479
CviJI RGCY 3 cut(s) 95, 191, 292
CviKI_1 RGCY 3 cut(s) 95, 191, 292
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 2 cut(s) 69, 288
DpnI GATC 2 cut(s) 144, 379
DpnII GATC 2 cut(s) 142, 377
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 123, 212
EcoNI CCTNNNNNAGG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 211, 482
FatI CATG 2 cut(s) 207, 478
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 237
Hin1II CATG 2 cut(s) 211, 482
Hpy188I TCNGA 2 cut(s) 231, 331
Hpy188III TCNNGA 2 cut(s) 113, 479
HpyAV CCTTC 4 cut(s) 236, 299, 415, 485
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 35, 170, 183, 409, 440
HpyF3I CTNAG 2 cut(s) 69, 288
Hsp92II CATG 2 cut(s) 211, 482
Kzo9I GATC 2 cut(s) 142, 377
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 6 cut(s) 114, 177, 201, 368, 432, 483
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 157, 271, 454
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 211, 442
MalI GATC 2 cut(s) 144, 379
MboI GATC 2 cut(s) 142, 377
MboII GAAGA 4 cut(s) 86, 116, 356, 372
MflI RGATCY 2 cut(s) 142, 377
MluCI AATT 5 cut(s) 50, 79, 261, 323, 500
MnlI CCTC 3 cut(s) 64, 271, 475
MseI TTAA 3 cut(s) 83, 198, 504
MslI CAYNNNNRTG 2 cut(s) 253, 495
NdeI CATATG 1 cut(s) 46
NdeII GATC 2 cut(s) 142, 377
NlaIII CATG 2 cut(s) 211, 482
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 211
PagI TCATGA 1 cut(s) 478
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 2 cut(s) 142, 377
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 253, 495
SaqAI TTAA 3 cut(s) 83, 198, 504
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 142, 377
SetI ASST 5 cut(s) 103, 193, 204, 228, 486
SfaNI GCATC 3 cut(s) 157, 271, 454
SmiMI CAYNNNNRTG 2 cut(s) 253, 495
Sse9I AATT 5 cut(s) 50, 79, 261, 323, 500
SspI AATATT 1 cut(s) 508
SspMI CTAG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 367
TasI AATT 5 cut(s) 50, 79, 261, 323, 500
Tru1I TTAA 3 cut(s) 83, 198, 504
Tru9I TTAA 3 cut(s) 83, 198, 504
TscAI CASTG 2 cut(s) 177, 220
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 63, 467
TspGWI ACGGA 2 cut(s) 308, 433
TspRI CASTG 2 cut(s) 177, 220
XagI CCTNNNNNAGG 1 cut(s) 479
XapI RAATTY 3 cut(s) 79, 261, 500
XbaI TCTAGA 1 cut(s) 112
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.