Rw5G024490

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
34778249 .. 34781229
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024490.1

Sequence Viewer

Length: 2850 bp
ATGCTTGATGATCCCAGCACTAGGCTCCTTAATGATAAACCCAAAAACAAATGGCGTATTGCTGTTTCCACCATCTTCTGCATTCGAGCCCTCCTCTCTTTACTCAACCAAATCACAAAAACCAACTTCATAACATCTAGCTCTCCGGTCTCTTCCAATAGTACTTTCAATGTGGACCAAATAGCTCTCACTCGGCTTGTGAAGAACAAAGATCCTGCTCAACTGCAAGAGTTGGGAGGGGTTGAAGGAGTAGCATTACATCTCAAATCTGATAAAGAGCATGGAATTCCTTGCCATGATGCTGAGGACATTCCCGACAGAATCAAAGAATTCGGTTCAAACGTTTACATAAAAGCCCCCAAAGGAGGTTTTTTCCGTTTTGTGTGGGAAGCCTTCAAAGACCCAACAGTACTCATCCTCTTAGGCTGTGCGGCACTTTCTCTTGGTTTTGGCATCAATGAACATGGATTCAAAGAAGGTTATACTAATGGTGGAACCATATTGCTCGCAGTCATTCAAATCATTTCCGTGTCTGCAGTAAGCGATTACAGGCAGAGCAGACCTTTGGTGCGTAACAATATCCAAATTGAGGCGTGGAGAGATCGGGTGCCGGCTGATGGATTACTTGTACAAGGCCATTCCTTGCAAGTAGACGAATCAAGCATGACAGGAACCGATAGCCCTGTTGAAATTAGCCACCATCAGAATCCCTTCCTTTTTTCTGGGACAAAAATCACACATGGATATGGTCGAATGCTTGTCACATCCGTTGGGATGAACACAACGTGGGGTGAGATGATGAGCCAAATGAGGCAAGACTCCAGTGAAAGGACACCCCTGCAAGAACGTCTGGAGAAGCTAAATTCGTTAATAGGTAAAGTAGCTTTGCTAGTTGCTTTCCTTCTTCTTGTAGTCTTGTTAGTTCGATACTTCACTGGGAATACCAAGGATGAGAATGGAAACAAGGAGTTCAATGGCAGCAACACAGAAGTAGATGACATAATAAGCGCAGTCATTGGGATTGTAGCGGCTGCGGTTTCCATTGTTGTGGTGGCAATTCCAGAAGGTCTCTCATTAGCACTAATTCTTGCTGTTGCCTATTCCAAGAAGATAATGATGGCTGACAAAGCAATGGATCTGAAGCTCTCTGCTTGTGAGACAATGGGATCTGTTACCACAATTTGCACTGACAAAACAGGTACTCTTACTATGAACCAGATGGAGGTGACCCAGTTTTGGTTAGGTAAATATTCTTTGGAAGAAGAGGCTTATTCATCAGAGATTTCTCCTTCTGTTCTTCATTTGATCCAAGAAGGAGTTGCTCTGAATACAACTGGTAGTGTGCACAAGCAAAGTTTGGATTCAAAAGTAGAAATCTCAGGCAGTCCAACTGAAAAGGCTATTATTTCATGGGGGAAAGTAATGAAGAGTTGTAGCATTCTCCATGTTGAGGCCTTTGATTCGCAGAATATGCGAAGTGGGGTTTCAATGAAGAGGAACGCAGACAACACAGTTCATGTACATTGGAAAGGAGCTGCAGAGATCATACTGGAAATGTGTTCAAGTTACTACAATCCCTCTGGACTCGTTATAGATATGGGTGACAGTGAAAAAAGGAGTTTTGAGGAGATTATTCAAGGTATGGCAGCTAGCAGACTCCGGTGTATTGCGTTTGCACATAAAGAAGTTCCAGCAGATCAAAACCATAGAACTATGCTAAAAGAAGATGGATTGACCTTGGTGGGACTTGTAGGTCTTAAAGATCCATGCCGTCCAGAAGCAAAGAAAGCAGTTGAAGATTGTCAATATGCAGGGGTGATGGTCAAAATGATTACAGGCGACAATATTTTCACTGCTAAAGCGATAGCCACAGAATGTGGGATACTCAAGTCCAGTGATGACATCTTCAGTGGGGCAGTGATAAACGGTGTGGAATTTCAAAGCTACACCGACTTGGAGAGAATGTTGAAGCTGGACAATATCTGTGTAATGGCGAGGTCTTCTGCTGCTGATAAGCTTCTAATGGTGCGATGCTTGAAGCAGAAAGGTCATGTAGTTGCAGTGACTGGTCATGGCGCTACTGATGTCCCAGCATTGGAAGAAGCTGATATAGGACTATCTATGGGAATTCAAGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTATAATCACAGATGATAACTTTGCTTCAGTGGTCAGTGTTTTGGCATGCGGAAGATGTGTTTATCACAATACGCAGAAGCTCGTCCAATTCCAGCTCACATCAAATGTTGCTGGTCTTTTGATCAACTTTGCAGTAGCGGCTTCATCAAGGCAAGTGCCATTTACGATAGTTCGTTCAATTTGGTTGAACATGATTATGGACACACTACTAGCTCTGGCTCTTACCAAGGACAAACCCACAAAAGAACTCATGGAAAAGCCACCGGTGGGCAGAACTGAGCCCTTCATCACCAATGTCATGTGCAGGAACCTCTTGGCTCAAGCTCTGTACCAAACAACTGTCCTCTTGATATTACAGTTCAGGGGAGAAGCAATGTTTGGTGTTAATGATAAGGTAAATGGCACCTTGATCTTTAATACTTTTGTGTTTTGCCAGATGTTCAATGAGTTTAACGCCAGGAAGCTTGTGAAGAAGGATATCTTTAGGAATATCCACACCGACAAATTGTTCATGGGGATAATTGCAGTGGCAGTTATTCTACAGATTGTGACAAGGTTGAACTACAGACTATGGGGAGTATGTCTTGGAATTGCAGCCATTTCTTGGCCAATCGGTTGGGCTGTTAAGTGTGTACCTGTGCCACAGAAACCCATTTTCCACTACCTGAAGATGAAGATGCACTGA

Protein Analysis

949

Amino Acids

104.31

Weight (kDa)

6.88

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 78 - 147 6.1e-13 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 200 - 270 1.9e-12 P-type ATPase actuator domain
Hydrolase PF00702 392 - 703 2e-11 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 434 - 593 1.6e-23 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 774 - 931 1.1e-28 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2168
AasI GACNNNNNNGTC 1 cut(s) 1752
AccB1I GGYRCC 2 cut(s) 607, 2567
AccB7I CCANNNNNTGG 1 cut(s) 2769
AccI GTMKAC 1 cut(s) 651
AciI CCGC 5 cut(s) 431, 1028, 1034, 2214, 2303
AclI AACGTT 1 cut(s) 342
AclWI GGATC 6 cut(s) 5, 206, 1143, 1174, 1300, 1757
AcoI YGGCCR 1 cut(s) 2771
AcsI RAATTY 5 cut(s) 285, 329, 862, 1934, 2127
AcuI CTGAAG 3 cut(s) 1160, 1891, 2175
AdeI CACNNNGTG 1 cut(s) 786
AfaI GTAC 7 cut(s) 163, 411, 630, 1201, 1521, 2495, 2799
AgeI ACCGGT 1 cut(s) 2428
AjnI CCWGG 1 cut(s) 2621
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 2526, 2558
Alw21I GWGCWC 1 cut(s) 1347
Alw26I GTCTC 3 cut(s) 154, 1073, 1151
Alw44I GTGCAC 1 cut(s) 1343
AlwI GGATC 6 cut(s) 5, 206, 1143, 1174, 1300, 1757
AlwNI CAGNNNCTG 1 cut(s) 2066
AoxI GGCC 3 cut(s) 634, 1452, 2771
ApaLI GTGCAC 1 cut(s) 1343
ApeKI GCWGC 6 cut(s) 978, 1031, 1535, 1646, 2006, 2759
ApoI RAATTY 5 cut(s) 285, 329, 862, 1934, 2127
AsiGI ACCGGT 1 cut(s) 2428
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 2 cut(s) 1010, 2078
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 5 cut(s) 803, 1237, 1613, 1828, 2446
AsuNHI GCTAGC 1 cut(s) 1649
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 1347
BaeI ACNNNNGTAYC 2 cut(s) 1874, 1907
BalI TGGCCA 1 cut(s) 2773
BanI GGYRCC 2 cut(s) 607, 2567
BanII GRGCYC 2 cut(s) 91, 2448
BbsI GAAGAC 1 cut(s) 1992
Bbv12I GWGCWC 1 cut(s) 1347
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 6 cut(s) 990, 1018, 1522, 1658, 1993, 2771
BccI CCATC 7 cut(s) 80, 611, 708, 1111, 1213, 1721, 1813
BceAI ACGGC 1 cut(s) 1755
BciT130I CCWGG 1 cut(s) 2623
BciVI GTATCC 1 cut(s) 1875
BclI TGATCA 1 cut(s) 2286
BcoDI GTCTC 3 cut(s) 154, 1073, 1151
BfaI CTAG 5 cut(s) 21, 138, 890, 1650, 2375
BfmI CTRYAG 4 cut(s) 534, 1536, 2705, 2728
BfoI RGCGCY 1 cut(s) 2079
BfuI GTATCC 1 cut(s) 1875
BisI GCNGC 9 cut(s) 432, 979, 1029, 1032, 1536, 1647, 2007, 2304, 2760
BlsI GCNGC 9 cut(s) 433, 980, 1030, 1033, 1537, 1648, 2008, 2305, 2761
BmcAI AGTACT 2 cut(s) 163, 411
Bme1390I CCNGG 1 cut(s) 2623
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 6 cut(s) 26, 496, 609, 673, 2474, 2569
BmrFI CCNGG 1 cut(s) 2623
BmrI ACTGGG 2 cut(s) 945, 1225
BmsI GCATC 4 cut(s) 289, 462, 2021, 2832
BmtI GCTAGC 1 cut(s) 1653
BmuI ACTGGG 2 cut(s) 945, 1225
BpiI GAAGAC 1 cut(s) 1992
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 2 cut(s) 805, 872
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 2 cut(s) 1871, 2469
BsaI GGTCTC 2 cut(s) 154, 1073
BsaJI CCNNGG 3 cut(s) 945, 1737, 2391
BsaWI WCCGGW 3 cut(s) 145, 1659, 2428
BsaXI ACNNNNNCTCC 2 cut(s) 1949, 1979
Bse118I RCCGGY 2 cut(s) 610, 2428
Bse1I ACTGG 7 cut(s) 822, 940, 1231, 1339, 1554, 1893, 2071
Bse3DI GCAATG 2 cut(s) 1137, 2544
BseBI CCWGG 1 cut(s) 2623
BseDI CCNNGG 3 cut(s) 945, 1737, 2391
BseGI GGATG 4 cut(s) 414, 764, 780, 955
BseMI GCAATG 2 cut(s) 1137, 2544
BseMII CTCAG 4 cut(s) 294, 1392, 2172, 2433
BseNI ACTGG 7 cut(s) 822, 940, 1231, 1339, 1554, 1893, 2071
BseRI GAGGAG 2 cut(s) 83, 1640
BseSI GKGCMC 1 cut(s) 1347
BseXI GCAGC 6 cut(s) 990, 1018, 1522, 1658, 1993, 2771
BseYI CCCAGC 2 cut(s) 14, 2089
BsgI GTGCAG 1 cut(s) 2488
BshFI GGCC 3 cut(s) 636, 1454, 2773
BshNI GGYRCC 2 cut(s) 607, 2567
BshTI ACCGGT 1 cut(s) 2428
BsiHKAI GWGCWC 1 cut(s) 1347
BsiSI CCGG 4 cut(s) 146, 611, 1660, 2429
BslFI GGGAC 3 cut(s) 739, 1758, 2072
BsmAI GTCTC 3 cut(s) 154, 1073, 1151
BsmFI GGGAC 3 cut(s) 739, 1758, 2072
BsmI GAATGC 3 cut(s) 81, 759, 1437
BsnI GGCC 3 cut(s) 636, 1454, 2773
Bso31I GGTCTC 2 cut(s) 154, 1073
Bsp1286I GDGCHC 3 cut(s) 91, 1347, 2448
Bsp1407I TGTACA 2 cut(s) 628, 1519
BspACI CCGC 5 cut(s) 431, 1028, 1034, 2214, 2303
BspANI GGCC 3 cut(s) 636, 1454, 2773
BspCNI CTCAG 4 cut(s) 295, 1391, 2171, 2434
BspLI GGNNCC 6 cut(s) 26, 496, 609, 673, 2474, 2569
BspMAI CTGCAG 2 cut(s) 538, 1540
BspOI GCTAGC 1 cut(s) 1653
BspPI GGATC 6 cut(s) 5, 206, 1143, 1174, 1300, 1757
BspT107I GGYRCC 2 cut(s) 607, 2567
BspTNI GGTCTC 2 cut(s) 154, 1073
BsrDI GCAATG 2 cut(s) 1137, 2544
BsrFI RCCGGY 2 cut(s) 610, 2428
BsrGI TGTACA 2 cut(s) 628, 1519
BsrI ACTGG 7 cut(s) 822, 940, 1231, 1339, 1554, 1893, 2071
BssAI RCCGGY 2 cut(s) 610, 2428
BssECI CCNNGG 3 cut(s) 945, 1737, 2391
BssT1I CCWWGG 3 cut(s) 945, 1737, 2391
Bst2UI CCWGG 1 cut(s) 2623
Bst4CI ACNGT 6 cut(s) 409, 1513, 1607, 1928, 2506, 2523
Bst6I CTCTTC 4 cut(s) 157, 1257, 1421, 1487
BstAPI GCANNNNNTGC 1 cut(s) 1471
BstAUI TGTACA 2 cut(s) 628, 1519
BstC8I GCNNGC 4 cut(s) 507, 612, 1651, 2212
BstDEI CTNAG 5 cut(s) 303, 421, 1378, 2158, 2442
BstEII GGTNACC 1 cut(s) 1225
BstF5I GGATG 4 cut(s) 414, 764, 780, 955
BstH2I RGCGCY 1 cut(s) 2079
BstHHI GCGC 2 cut(s) 1010, 2078
BstMAI GTCTC 3 cut(s) 154, 1073, 1151
BstMWI GCNNNNNNNGC 4 cut(s) 1127, 1471, 1787, 2303
BstNI CCWGG 1 cut(s) 2623
BstNSI RCATGY 1 cut(s) 2214
BstPI GGTNACC 1 cut(s) 1225
BstSCI CCNGG 1 cut(s) 2621
BstSFI CTRYAG 4 cut(s) 534, 1536, 2705, 2728
BstSLI GKGCMC 1 cut(s) 1347
BstV1I GCAGC 6 cut(s) 990, 1018, 1522, 1658, 1993, 2771
BstV2I GAAGAC 1 cut(s) 1992
BstX2I RGATCY 4 cut(s) 211, 1135, 1166, 1762
BstXI CCANNNNNNTGG 2 cut(s) 1048, 2781
BstYI RGATCY 4 cut(s) 211, 1135, 1166, 1762
BsuI GTATCC 1 cut(s) 1875
BsuRI GGCC 3 cut(s) 636, 1454, 2773
BtgZI GCGATG 1 cut(s) 2044
BtsCI GGATG 4 cut(s) 414, 764, 780, 955
BtsI GCAGTG 4 cut(s) 1851, 1923, 2067, 2697
Cac8I GCNNGC 4 cut(s) 507, 612, 1651, 2212
CaiI CAGNNNCTG 1 cut(s) 2066
CfoI GCGC 2 cut(s) 1010, 2078
Cfr10I RCCGGY 2 cut(s) 610, 2428
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 7 cut(s) 162, 410, 629, 1200, 1520, 2494, 2798
CspAI ACCGGT 1 cut(s) 2428
CviQI GTAC 7 cut(s) 162, 410, 629, 1200, 1520, 2494, 2798
DdeI CTNAG 5 cut(s) 303, 421, 1378, 2158, 2442
DraIII CACNNNGTG 1 cut(s) 786
DrdI GACNNNNNNGTC 1 cut(s) 1752
DseDI GACNNNNNNGTC 1 cut(s) 1752
EaeI YGGCCR 1 cut(s) 2771
Eam1104I CTCTTC 4 cut(s) 157, 1257, 1421, 1487
EarI CTCTTC 4 cut(s) 157, 1257, 1421, 1487
Eco130I CCWWGG 3 cut(s) 945, 1737, 2391
Eco147I AGGCCT 1 cut(s) 1454
Eco24I GRGCYC 2 cut(s) 91, 2448
Eco31I GGTCTC 2 cut(s) 154, 1073
Eco32I GATATC 1 cut(s) 2644
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 3 cut(s) 1160, 1891, 2175
Eco91I GGTNACC 1 cut(s) 1225
EcoO65I GGTNACC 1 cut(s) 1225
EcoRI GAATTC 3 cut(s) 285, 329, 2127
EcoRII CCWGG 1 cut(s) 2621
EcoRV GATATC 1 cut(s) 2644
EcoT14I CCWWGG 3 cut(s) 945, 1737, 2391
EcoT38I GRGCYC 2 cut(s) 91, 2448
ErhI CCWWGG 3 cut(s) 945, 1737, 2391
FalI AAGNNNNNCTT 2 cut(s) 2630, 2662
FaqI GGGAC 3 cut(s) 739, 1758, 2072
FbaI TGATCA 1 cut(s) 2286
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 9 cut(s) 432, 979, 1029, 1032, 1536, 1647, 2007, 2304, 2760
FokI GGATG 4 cut(s) 401, 751, 787, 962
FriOI GRGCYC 2 cut(s) 91, 2448
Fsp4HI GCNGC 9 cut(s) 432, 979, 1029, 1032, 1536, 1647, 2007, 2304, 2760
FspBI CTAG 5 cut(s) 21, 138, 890, 1650, 2375
GlaI GCGC 2 cut(s) 1009, 2077
GluI GCNGC 9 cut(s) 432, 979, 1029, 1032, 1536, 1647, 2007, 2304, 2760
GsaI CCCAGC 2 cut(s) 18, 2093
GsuI CTGGAG 2 cut(s) 805, 872
HaeII RGCGCY 1 cut(s) 2079
HaeIII GGCC 3 cut(s) 636, 1454, 2773
HapII CCGG 4 cut(s) 146, 611, 1660, 2429
HhaI GCGC 2 cut(s) 1010, 2078
Hin6I GCGC 2 cut(s) 1008, 2076
HinP1I GCGC 2 cut(s) 1008, 2076
HindIII AAGCTT 2 cut(s) 2015, 2627
HinfI GANTC 9 cut(s) 321, 468, 656, 706, 818, 1361, 1460, 1584, 1656
HpaII CCGG 4 cut(s) 146, 611, 1660, 2429
HphI GGTGA 5 cut(s) 803, 1237, 1613, 1828, 2446
Hpy166II GTNNAC 5 cut(s) 175, 346, 652, 1345, 2798
Hpy188I TCNGA 6 cut(s) 271, 705, 1140, 1279, 1326, 2161
Hpy188III TCNNGA 6 cut(s) 314, 851, 1061, 1581, 1775, 2512
Hpy8I GTNNAC 5 cut(s) 175, 346, 652, 1345, 2798
HpyCH4III ACNGT 6 cut(s) 409, 1513, 1607, 1928, 2506, 2523
HpyCH4IV ACGT 3 cut(s) 342, 785, 847
HpyF10VI GCNNNNNNNGC 4 cut(s) 1127, 1471, 1787, 2303
HpyF3I CTNAG 5 cut(s) 303, 421, 1378, 2158, 2442
HpySE526I ACGT 3 cut(s) 342, 785, 847
HspAI GCGC 2 cut(s) 1008, 2076
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 2286
LmnI GCTCC 2 cut(s) 30, 1532
Lsp1109I GCAGC 6 cut(s) 990, 1018, 1522, 1658, 1993, 2771
LweI GCATC 4 cut(s) 289, 462, 2021, 2832
MaeI CTAG 5 cut(s) 21, 138, 890, 1650, 2375
MaeII ACGT 3 cut(s) 342, 785, 847
MaeIII GTNAC 8 cut(s) 572, 760, 1171, 1225, 1565, 1601, 2062, 2713
MflI RGATCY 4 cut(s) 211, 1135, 1166, 1762
MhlI GDGCHC 3 cut(s) 91, 1347, 2448
MlsI TGGCCA 1 cut(s) 2773
MluNI TGGCCA 1 cut(s) 2773
MlyI GAGTC 3 cut(s) 812, 1578, 1650
MmeI TCCRAC 1 cut(s) 1412
Mox20I TGGCCA 1 cut(s) 2773
MroNI GCCGGC 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 710
MscI TGGCCA 1 cut(s) 2773
MseI TTAA 7 cut(s) 30, 869, 1758, 2550, 2580, 2616, 2790
MslI CAYNNNNRTG 4 cut(s) 527, 744, 1046, 2360
Msp20I TGGCCA 1 cut(s) 2773
MspI CCGG 4 cut(s) 146, 611, 1660, 2429
MspR9I CCNGG 1 cut(s) 2623
Mva1269I GAATGC 3 cut(s) 81, 759, 1437
MvaI CCWGG 1 cut(s) 2623
MwoI GCNNNNNNNGC 4 cut(s) 1127, 1471, 1787, 2303
NaeI GCCGGC 1 cut(s) 612
NgoMIV GCCGGC 1 cut(s) 610
NheI GCTAGC 1 cut(s) 1649
NlaIV GGNNCC 6 cut(s) 26, 496, 609, 673, 2474, 2569
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 5 cut(s) 760, 1225, 1601, 2062, 2713
NspI RCATGY 1 cut(s) 2214
PaeI GCATGC 1 cut(s) 2214
PceI AGGCCT 1 cut(s) 1454
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 3 cut(s) 81, 759, 1437
PdiI GCCGGC 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 6 cut(s) 321, 468, 656, 706, 1361, 1460
PflMI CCANNNNNTGG 1 cut(s) 2769
PinAI ACCGGT 1 cut(s) 2428
PkrI GCNGC 9 cut(s) 433, 980, 1030, 1033, 1537, 1648, 2008, 2305, 2761
PleI GAGTC 3 cut(s) 812, 1578, 1650
PpsI GAGTC 3 cut(s) 812, 1578, 1650
PsiI TTATAA 1 cut(s) 2168
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 2621
PspEI GGTNACC 1 cut(s) 1225
PspFI CCCAGC 2 cut(s) 14, 2089
PspGI CCWGG 1 cut(s) 2621
PspN4I GGNNCC 6 cut(s) 26, 496, 609, 673, 2474, 2569
PspPI GGNCC 1 cut(s) 175
PstI CTGCAG 2 cut(s) 538, 1540
PstNI CAGNNNCTG 1 cut(s) 2066
PsuI RGATCY 4 cut(s) 211, 1135, 1166, 1762
RsaI GTAC 7 cut(s) 163, 411, 630, 1201, 1521, 2495, 2799
RsaNI GTAC 7 cut(s) 162, 410, 629, 1200, 1520, 2494, 2798
RseI CAYNNNNRTG 4 cut(s) 527, 744, 1046, 2360
SaqAI TTAA 7 cut(s) 30, 869, 1758, 2550, 2580, 2616, 2790
SatI GCNGC 9 cut(s) 432, 979, 1029, 1032, 1536, 1647, 2007, 2304, 2760
Sau96I GGNCC 1 cut(s) 175
ScaI AGTACT 2 cut(s) 163, 411
SchI GAGTC 3 cut(s) 812, 1578, 1650
ScrFI CCNGG 1 cut(s) 2623
SduI GDGCHC 3 cut(s) 91, 1347, 2448
SfaNI GCATC 4 cut(s) 289, 462, 2021, 2832
SfcI CTRYAG 4 cut(s) 534, 1536, 2705, 2728
SgrAI CRCCGGYG 1 cut(s) 2428
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 4 cut(s) 527, 744, 1046, 2360
SmlI CTYRAG 2 cut(s) 1886, 2484
SmoI CTYRAG 2 cut(s) 1886, 2484
SphI GCATGC 1 cut(s) 2214
SseBI AGGCCT 1 cut(s) 1454
SsiI CCGC 5 cut(s) 431, 1028, 1034, 2214, 2303
SspI AATATT 2 cut(s) 1250, 1846
SspMI CTAG 5 cut(s) 21, 138, 890, 1650, 2375
StuI AGGCCT 1 cut(s) 1454
StyD4I CCNGG 1 cut(s) 2621
StyI CCWWGG 3 cut(s) 945, 1737, 2391
TaaI ACNGT 6 cut(s) 409, 1513, 1607, 1928, 2506, 2523
TaiI ACGT 3 cut(s) 345, 788, 850
TaqI TCGA 3 cut(s) 85, 751, 925
TatI WGTACW 4 cut(s) 161, 409, 628, 1519
TauI GCSGC 3 cut(s) 434, 1031, 2306
TfiI GAWTC 6 cut(s) 321, 468, 656, 706, 1361, 1460
Tru1I TTAA 7 cut(s) 30, 869, 1758, 2550, 2580, 2616, 2790
Tru9I TTAA 7 cut(s) 30, 869, 1758, 2550, 2580, 2616, 2790
TseFI GTSAC 5 cut(s) 760, 1225, 1601, 2062, 2713
TseI GCWGC 6 cut(s) 978, 1031, 1535, 1646, 2006, 2759
Tsp45I GTSAC 5 cut(s) 760, 1225, 1601, 2062, 2713
TspGWI ACGGA 3 cut(s) 365, 517, 757
Van91I CCANNNNNTGG 1 cut(s) 2769
VneI GTGCAC 1 cut(s) 1343
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 5 cut(s) 285, 329, 862, 1934, 2127
XceI RCATGY 1 cut(s) 2214
XcmI CCANNNNNNNNNTGG 1 cut(s) 1048
XmiI GTMKAC 1 cut(s) 651
XmnI GAANNNNTTC 1 cut(s) 710
XspI CTAG 5 cut(s) 21, 138, 890, 1650, 2375
ZrmI AGTACT 2 cut(s) 163, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.