AAA domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF6469 | PF20073 | 363 - 446 | 3.7e-08 | Domain of unknown function (DUF6469) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 602 |
| Acc36I | ACCTGC | 1 cut(s) | 859 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1091 |
| AccI | GTMKAC | 2 cut(s) | 818, 1281 |
| AciI | CCGC | 1 cut(s) | 1373 |
| AclWI | GGATC | 2 cut(s) | 726, 765 |
| AcoI | YGGCCR | 1 cut(s) | 329 |
| AcsI | RAATTY | 4 cut(s) | 879, 1002, 1155, 1398 |
| AfaI | GTAC | 8 cut(s) | 52, 86, 270, 304, 310, 647, 710, 811 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| AflIII | ACRYGT | 1 cut(s) | 405 |
| AgsI | TTSAA | 9 cut(s) | 103, 200, 463, 499, 597, 1144, 1218, 1327, 1409 |
| AhlI | ACTAGT | 2 cut(s) | 305, 374 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1389, 1421 |
| AluBI | AGCT | 5 cut(s) | 14, 574, 670, 767, 1322 |
| AluI | AGCT | 5 cut(s) | 14, 574, 670, 767, 1322 |
| Alw21I | GWGCWC | 1 cut(s) | 1465 |
| Alw26I | GTCTC | 2 cut(s) | 881, 1185 |
| AlwI | GGATC | 2 cut(s) | 726, 765 |
| AoxI | GGCC | 2 cut(s) | 329, 1148 |
| ApaI | GGGCCC | 1 cut(s) | 1152 |
| ApeKI | GCWGC | 6 cut(s) | 140, 143, 381, 417, 761, 764 |
| ApoI | RAATTY | 4 cut(s) | 879, 1002, 1155, 1398 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 503, 920 |
| AspS9I | GGNCC | 3 cut(s) | 1034, 1148, 1149 |
| AsuII | TTCGAA | 1 cut(s) | 337 |
| AvaII | GGWCC | 1 cut(s) | 1034 |
| BaeGI | GKGCMC | 2 cut(s) | 444, 1152 |
| BalI | TGGCCA | 1 cut(s) | 331 |
| BanII | GRGCYC | 1 cut(s) | 1152 |
| BbsI | GAAGAC | 1 cut(s) | 455 |
| Bbv12I | GWGCWC | 1 cut(s) | 1465 |
| BbvI | GCAGC | 6 cut(s) | 152, 155, 393, 429, 773, 776 |
| BccI | CCATC | 1 cut(s) | 29 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 146, 180 |
| BclI | TGATCA | 1 cut(s) | 1135 |
| BcoDI | GTCTC | 2 cut(s) | 881, 1185 |
| BcuI | ACTAGT | 2 cut(s) | 305, 374 |
| BfaI | CTAG | 3 cut(s) | 74, 306, 375 |
| BfuAI | ACCTGC | 1 cut(s) | 859 |
| BglII | AGATCT | 1 cut(s) | 1096 |
| BisI | GCNGC | 6 cut(s) | 141, 144, 382, 418, 762, 765 |
| BlsI | GCNGC | 6 cut(s) | 142, 145, 383, 419, 763, 766 |
| BmcAI | AGTACT | 3 cut(s) | 52, 270, 310 |
| Bme18I | GGWCC | 1 cut(s) | 1034 |
| BmgT120I | GGNCC | 3 cut(s) | 1034, 1148, 1149 |
| BmiI | GGNNCC | 1 cut(s) | 1150 |
| BmrI | ACTGGG | 2 cut(s) | 321, 351 |
| BmsI | GCATC | 1 cut(s) | 234 |
| BmuI | ACTGGG | 2 cut(s) | 321, 351 |
| BpiI | GAAGAC | 1 cut(s) | 455 |
| Bpu14I | TTCGAA | 1 cut(s) | 337 |
| BpuEI | CTTGAG | 2 cut(s) | 328, 949 |
| Bsa29I | ATCGAT | 2 cut(s) | 698, 1227 |
| BsaAI | YACGTR | 2 cut(s) | 712, 822 |
| BsaJI | CCNNGG | 1 cut(s) | 508 |
| BsaWI | WCCGGW | 1 cut(s) | 466 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1091 |
| Bse1I | ACTGG | 2 cut(s) | 316, 357 |
| Bse3DI | GCAATG | 4 cut(s) | 68, 181, 1167, 1463 |
| BseCI | ATCGAT | 2 cut(s) | 698, 1227 |
| BseDI | CCNNGG | 1 cut(s) | 508 |
| BseGI | GGATG | 2 cut(s) | 452, 687 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| BseMI | GCAATG | 4 cut(s) | 68, 181, 1167, 1463 |
| BseMII | CTCAG | 1 cut(s) | 876 |
| BseNI | ACTGG | 2 cut(s) | 316, 357 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BseSI | GKGCMC | 2 cut(s) | 444, 1152 |
| BseXI | GCAGC | 6 cut(s) | 152, 155, 393, 429, 773, 776 |
| BshFI | GGCC | 2 cut(s) | 331, 1150 |
| BshVI | ATCGAT | 2 cut(s) | 698, 1227 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1465 |
| BsiSI | CCGG | 1 cut(s) | 467 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1091 |
| BsmAI | GTCTC | 2 cut(s) | 881, 1185 |
| BsmI | GAATGC | 1 cut(s) | 420 |
| BsnI | GGCC | 2 cut(s) | 331, 1150 |
| Bsp119I | TTCGAA | 1 cut(s) | 337 |
| Bsp120I | GGGCCC | 1 cut(s) | 1148 |
| Bsp1286I | GDGCHC | 3 cut(s) | 444, 1152, 1465 |
| Bsp1407I | TGTACA | 1 cut(s) | 84 |
| Bsp143I | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| BspACI | CCGC | 1 cut(s) | 1373 |
| BspANI | GGCC | 2 cut(s) | 331, 1150 |
| BspCNI | CTCAG | 1 cut(s) | 877 |
| BspDI | ATCGAT | 2 cut(s) | 698, 1227 |
| BspLI | GGNNCC | 1 cut(s) | 1150 |
| BspMI | ACCTGC | 1 cut(s) | 859 |
| BspPI | GGATC | 2 cut(s) | 726, 765 |
| BspT104I | TTCGAA | 1 cut(s) | 337 |
| BsrDI | GCAATG | 4 cut(s) | 68, 181, 1167, 1463 |
| BsrGI | TGTACA | 1 cut(s) | 84 |
| BsrI | ACTGG | 2 cut(s) | 316, 357 |
| BssECI | CCNNGG | 1 cut(s) | 508 |
| BssMI | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| BssT1I | CCWWGG | 1 cut(s) | 508 |
| Bst4CI | ACNGT | 6 cut(s) | 439, 814, 901, 1012, 1196, 1306 |
| Bst6I | CTCTTC | 1 cut(s) | 1219 |
| BstAUI | TGTACA | 1 cut(s) | 84 |
| BstBAI | YACGTR | 2 cut(s) | 712, 822 |
| BstBI | TTCGAA | 1 cut(s) | 337 |
| BstC8I | GCNNGC | 2 cut(s) | 987, 1377 |
| BstDEI | CTNAG | 5 cut(s) | 515, 575, 629, 885, 1023 |
| BstF5I | GGATG | 2 cut(s) | 452, 687 |
| BstKTI | GATC | 9 cut(s) | 175, 698, 702, 721, 773, 958, 1099, 1138, 1470 |
| BstMAI | GTCTC | 2 cut(s) | 881, 1185 |
| BstMBI | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1372 |
| BstNSI | RCATGY | 4 cut(s) | 243, 409, 953, 1246 |
| BstSLI | GKGCMC | 2 cut(s) | 444, 1152 |
| BstSNI | TACGTA | 2 cut(s) | 712, 822 |
| BstV1I | GCAGC | 6 cut(s) | 152, 155, 393, 429, 773, 776 |
| BstV2I | GAAGAC | 1 cut(s) | 455 |
| BstX2I | RGATCY | 1 cut(s) | 1096 |
| BstYI | RGATCY | 1 cut(s) | 1096 |
| Bsu15I | ATCGAT | 2 cut(s) | 698, 1227 |
| BsuRI | GGCC | 2 cut(s) | 331, 1150 |
| BsuTUI | ATCGAT | 2 cut(s) | 698, 1227 |
| BtgZI | GCGATG | 1 cut(s) | 1371 |
| BtsCI | GGATG | 2 cut(s) | 452, 687 |
| BtsI | GCAGTG | 1 cut(s) | 675 |
| BtsIMutI | CAGTG | 3 cut(s) | 364, 444, 675 |
| BveI | ACCTGC | 1 cut(s) | 859 |
| Cac8I | GCNNGC | 2 cut(s) | 987, 1377 |
| Cfr13I | GGNCC | 3 cut(s) | 1034, 1148, 1149 |
| ClaI | ATCGAT | 2 cut(s) | 698, 1227 |
| Csp6I | GTAC | 8 cut(s) | 51, 85, 269, 303, 309, 646, 709, 810 |
| CviJI | RGCY | 9 cut(s) | 14, 146, 331, 574, 670, 767, 1150, 1322, 1379 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 146, 331, 574, 670, 767, 1150, 1322, 1379 |
| CviQI | GTAC | 8 cut(s) | 51, 85, 269, 303, 309, 646, 709, 810 |
| DdeI | CTNAG | 5 cut(s) | 515, 575, 629, 885, 1023 |
| DpnI | GATC | 9 cut(s) | 174, 697, 701, 720, 772, 957, 1098, 1137, 1469 |
| DpnII | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| EaeI | YGGCCR | 1 cut(s) | 329 |
| Eam1104I | CTCTTC | 1 cut(s) | 1219 |
| EarI | CTCTTC | 1 cut(s) | 1219 |
| Eco105I | TACGTA | 2 cut(s) | 712, 822 |
| Eco130I | CCWWGG | 1 cut(s) | 508 |
| Eco24I | GRGCYC | 1 cut(s) | 1152 |
| Eco47I | GGWCC | 1 cut(s) | 1034 |
| EcoRI | GAATTC | 1 cut(s) | 1398 |
| EcoT14I | CCWWGG | 1 cut(s) | 508 |
| EcoT22I | ATGCAT | 1 cut(s) | 1248 |
| EcoT38I | GRGCYC | 1 cut(s) | 1152 |
| ErhI | CCWWGG | 1 cut(s) | 508 |
| FauNDI | CATATG | 2 cut(s) | 159, 1174 |
| FbaI | TGATCA | 1 cut(s) | 1135 |
| FblI | GTMKAC | 2 cut(s) | 818, 1281 |
| Fnu4HI | GCNGC | 6 cut(s) | 141, 144, 382, 418, 762, 765 |
| FokI | GGATG | 2 cut(s) | 439, 674 |
| FriOI | GRGCYC | 1 cut(s) | 1152 |
| Fsp4HI | GCNGC | 6 cut(s) | 141, 144, 382, 418, 762, 765 |
| FspBI | CTAG | 3 cut(s) | 74, 306, 375 |
| GluI | GCNGC | 6 cut(s) | 141, 144, 382, 418, 762, 765 |
| HaeIII | GGCC | 2 cut(s) | 331, 1150 |
| HapII | CCGG | 1 cut(s) | 467 |
| HincII | GTYRAC | 1 cut(s) | 862 |
| HindII | GTYRAC | 1 cut(s) | 862 |
| HindIII | AAGCTT | 1 cut(s) | 1320 |
| HinfI | GANTC | 7 cut(s) | 163, 209, 250, 396, 976, 994, 1027 |
| HpaII | CCGG | 1 cut(s) | 467 |
| Hpy166II | GTNNAC | 3 cut(s) | 819, 862, 1282 |
| Hpy188I | TCNGA | 8 cut(s) | 98, 137, 214, 278, 692, 726, 1008, 1467 |
| Hpy188III | TCNNGA | 5 cut(s) | 167, 345, 884, 998, 1288 |
| Hpy8I | GTNNAC | 3 cut(s) | 819, 862, 1282 |
| HpyAV | CCTTC | 3 cut(s) | 386, 721, 939 |
| HpyCH4III | ACNGT | 6 cut(s) | 439, 814, 901, 1012, 1196, 1306 |
| HpyCH4IV | ACGT | 3 cut(s) | 711, 821, 838 |
| HpyCH4V | TGCA | 7 cut(s) | 108, 239, 761, 868, 1172, 1246, 1456 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1372 |
| HpyF3I | CTNAG | 5 cut(s) | 515, 575, 629, 885, 1023 |
| HpySE526I | ACGT | 3 cut(s) | 711, 821, 838 |
| Ksp22I | TGATCA | 1 cut(s) | 1135 |
| Kzo9I | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| LmnI | GCTCC | 2 cut(s) | 315, 1371 |
| Lsp1109I | GCAGC | 6 cut(s) | 152, 155, 393, 429, 773, 776 |
| LweI | GCATC | 1 cut(s) | 234 |
| MaeI | CTAG | 3 cut(s) | 74, 306, 375 |
| MaeII | ACGT | 3 cut(s) | 711, 821, 838 |
| MaeIII | GTNAC | 4 cut(s) | 871, 901, 908, 1060 |
| MalI | GATC | 9 cut(s) | 174, 697, 701, 720, 772, 957, 1098, 1137, 1469 |
| MboI | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| MboII | GAAGA | 7 cut(s) | 182, 460, 535, 705, 781, 1206, 1248 |
| MflI | RGATCY | 1 cut(s) | 1096 |
| MhlI | GDGCHC | 3 cut(s) | 444, 1152, 1465 |
| MlsI | TGGCCA | 1 cut(s) | 331 |
| MluNI | TGGCCA | 1 cut(s) | 331 |
| MlyI | GAGTC | 1 cut(s) | 988 |
| MmeI | TCCRAC | 2 cut(s) | 1072, 1393 |
| MnlI | CCTC | 4 cut(s) | 284, 934, 1047, 1295 |
| Mox20I | TGGCCA | 1 cut(s) | 331 |
| Mph1103I | ATGCAT | 1 cut(s) | 1248 |
| MroXI | GAANNNNTTC | 2 cut(s) | 503, 920 |
| MscI | TGGCCA | 1 cut(s) | 331 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1292 |
| Msp20I | TGGCCA | 1 cut(s) | 331 |
| MspI | CCGG | 1 cut(s) | 467 |
| Mva1269I | GAATGC | 1 cut(s) | 420 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1372 |
| NdeI | CATATG | 2 cut(s) | 159, 1174 |
| NdeII | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| NlaIV | GGNNCC | 1 cut(s) | 1150 |
| NmuCI | GTSAC | 1 cut(s) | 871 |
| NsiI | ATGCAT | 1 cut(s) | 1248 |
| NspI | RCATGY | 4 cut(s) | 243, 409, 953, 1246 |
| NspV | TTCGAA | 1 cut(s) | 337 |
| PciI | ACATGT | 1 cut(s) | 405 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 989 |
| PctI | GAATGC | 1 cut(s) | 420 |
| PdmI | GAANNNNTTC | 2 cut(s) | 503, 920 |
| PfeI | GAWTC | 6 cut(s) | 163, 209, 250, 396, 976, 1027 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1091 |
| PkrI | GCNGC | 6 cut(s) | 142, 145, 383, 419, 763, 766 |
| PleI | GAGTC | 1 cut(s) | 988 |
| PpsI | GAGTC | 1 cut(s) | 988 |
| Ppu21I | YACGTR | 2 cut(s) | 712, 822 |
| PscI | ACATGT | 1 cut(s) | 405 |
| PsiI | TTATAA | 1 cut(s) | 602 |
| PspN4I | GGNNCC | 1 cut(s) | 1150 |
| PspOMI | GGGCCC | 1 cut(s) | 1148 |
| PspPI | GGNCC | 3 cut(s) | 1034, 1148, 1149 |
| PsuI | RGATCY | 1 cut(s) | 1096 |
| RsaI | GTAC | 8 cut(s) | 52, 86, 270, 304, 310, 647, 710, 811 |
| RsaNI | GTAC | 8 cut(s) | 51, 85, 269, 303, 309, 646, 709, 810 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1292 |
| SatI | GCNGC | 6 cut(s) | 141, 144, 382, 418, 762, 765 |
| Sau3AI | GATC | 9 cut(s) | 172, 695, 699, 718, 770, 955, 1096, 1135, 1467 |
| Sau96I | GGNCC | 3 cut(s) | 1034, 1148, 1149 |
| ScaI | AGTACT | 3 cut(s) | 52, 270, 310 |
| SchI | GAGTC | 1 cut(s) | 988 |
| SduI | GDGCHC | 3 cut(s) | 444, 1152, 1465 |
| SfaNI | GCATC | 1 cut(s) | 234 |
| SfuI | TTCGAA | 1 cut(s) | 337 |
| SinI | GGWCC | 1 cut(s) | 1034 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1292 |
| SmlI | CTYRAG | 2 cut(s) | 343, 964 |
| SmoI | CTYRAG | 2 cut(s) | 343, 964 |
| SnaBI | TACGTA | 2 cut(s) | 712, 822 |
| SpeI | ACTAGT | 2 cut(s) | 305, 374 |
| SsiI | CCGC | 1 cut(s) | 1373 |
| SspI | AATATT | 1 cut(s) | 639 |
| SspMI | CTAG | 3 cut(s) | 74, 306, 375 |
| StyI | CCWWGG | 1 cut(s) | 508 |
| TaaI | ACNGT | 6 cut(s) | 439, 814, 901, 1012, 1196, 1306 |
| TaiI | ACGT | 3 cut(s) | 714, 824, 841 |
| TaqI | TCGA | 6 cut(s) | 337, 698, 769, 999, 1227, 1309 |
| TatI | WGTACW | 7 cut(s) | 50, 84, 268, 302, 308, 645, 809 |
| TfiI | GAWTC | 6 cut(s) | 163, 209, 250, 396, 976, 1027 |
| TscAI | CASTG | 3 cut(s) | 364, 444, 682 |
| TseFI | GTSAC | 1 cut(s) | 871 |
| TseI | GCWGC | 6 cut(s) | 140, 143, 381, 417, 761, 764 |
| Tsp45I | GTSAC | 1 cut(s) | 871 |
| TspRI | CASTG | 3 cut(s) | 364, 444, 682 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1091 |
| VpaK11BI | GGWCC | 1 cut(s) | 1034 |
| XapI | RAATTY | 4 cut(s) | 879, 1002, 1155, 1398 |
| XceI | RCATGY | 4 cut(s) | 243, 409, 953, 1246 |
| XmiI | GTMKAC | 2 cut(s) | 818, 1281 |
| XmnI | GAANNNNTTC | 2 cut(s) | 503, 920 |
| XspI | CTAG | 3 cut(s) | 74, 306, 375 |
| ZrmI | AGTACT | 3 cut(s) | 52, 270, 310 |
| Zsp2I | ATGCAT | 1 cut(s) | 1248 |