pycom13g26760

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000279
Physical Location & Seq
Forward (+)
23272664 .. 23273150
487 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGGATCGTCTGGAGGAGAGTAATAAGTTGAACAATTATGGAGTTGCAGCAGGTCGAGGCTTAATCAATGTCGTATTCTCTTGGTCACTTAAGGATGTTCTCAATGCAAAGCTTTACGAAAATCAGGTGACAAAGATTCCTGAGACATTTTCTACCACGATGAGTTACATGAAATCTTTCATCCCTTCACTTGTTGAGGAAACACATGCTGATCTACTATCCAGCATGACGAATCTATCAAAGGCACCTACTTGCGAACTTCTGACTGTTACGGCTTCTGAGAATCATCGACCTCCTAAAGACTTGTTTTATGATGTTACTTGTGTAGGAACGTATGTGCCACAGGTTGGAGATCGATCCTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

123

Amino Acids

13.58

Weight (kDa)

5.29

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65810 AT1G65810 AT1G65810 AT4G05540 AT5G37140 AT5G37150 AT5G37160 AT5G37165 AT5G52090
fragaria_vesca FvH4_1g27541 FvH4_1g27542 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_2g08960 FvH4_3g00170 FvH4_3g00170 FvH4_3g00170 FvH4_5g05930 FvH4_5g05930
malus_domestica MD08G1077700.v1.1 MD08G1077900.v1.1 MD08G1078000.v1.1 MD08G1078100.v1.1 MD08G1078300.v1.1 MD09G1057800.v1.1 MD09G1281400.v1.1 MD11G1222900.v1.1 MD14G1146400.v1.1
prunus_persica Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G201900_v2.0.a1 Prupe.1G202100_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.1G202500_v2.0.a1 Prupe.3G013100_v2.0.a1
pyrus_communis pycom09g18900 pycom09g18910 pycom13g26720 pycom13g26730 pycom13g26760 pycom13g26770
rosa_chinensis RchiOBHm_Chr3g0488001 RchiOBHm_Chr3g0488011 RchiOBHm_Chr3g0488031 RchiOBHm_Chr3g0488061 RchiOBHm_Chr3g0488111 RchiOBHm_Chr3g0488201 RchiOBHm_Chr3g0488211 RchiOBHm_Chr3g0488221 RchiOBHm_Chr3g0488321 RchiOBHm_Chr3g0488431 RchiOBHm_Chr6g0264601 RchiOBHm_Chr6g0264641
rosa_laevigata RLG00000014240 RLG00000014241 RLG00000022910 RLG00000022949 RLG00000030376
rosa_multiflora Rmu_co8075388.1_g000001 Rmu_co8424869.1_g000001 Rmu_co8427783.1_g000001 Rmu_sc0000546.1_g000002 Rmu_sc0000546.1_g000015 Rmu_sc0011052.1_g000014 Rmu_sc0017772.1_g000004
rosa_roxburghii Rroxscaffold_175G00431980 Rroxscaffold_175G00431990 Rroxscaffold_1G00034600 Rroxscaffold_6G00394230 Rroxscaffold_6G00394270 Rroxscaffold_6G00394280 Rroxscaffold_6G00394350 Rroxscaffold_7G00203240 Rroxscaffold_7G00203270 Rroxscaffold_7G00203280 Rroxscaffold_7G00203300 Rroxscaffold_7G00205740
rosa_rugosa Rorug03G0238000 Rorug03G0238100 Rorug03G0238100 Rorug03G0238500 Rorug05G0155400 Rorug05G0356000 Rorug05G0463000 Rorug06G0015200 Rorug06G0015300 Rorug06G0015400 Rorug06G0015500 Rorug06G0015500
rosa_samantha Rh1DG088100 Rh2AG244800 Rh2BG187500 Rh2CG247300 Rh3BG322700 Rh3BG322800 Rh3BG323100 Rh3BG323900 Rh3BG324000 Rh3BG324300 Rh3CG321300 Rh3CG321400 Rh3CG321500 Rh3DG319400 Rh3DG319900 Rh3DG320100 Rh3DG320200 Rh6AG133700 Rh6AG133800 Rh6AG133900 Rh6CG129300 Rh6CG129800 Rh6CG130200 Rh6DG116500 Rh6DG117200 Rh7DG378000
rosa_wichuraiana Rw2G014710 Rw3G025340 Rw3G025350 Rw3G025360 Rw5G020630 Rw6G011590 Rw6G011600 Rw7G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 347
AclWI GGATC 2 cut(s) 12, 351
AfiI CCNNNNNNNGG 1 cut(s) 347
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 12, 351
ApeKI GCWGC 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 137
BfrI CTTAAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 355
BseGI GGATG 2 cut(s) 100, 180
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 132, 270
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 137
Bsp143I GATC 4 cut(s) 4, 211, 352, 356
BspCNI CTCAG 2 cut(s) 133, 271
BspDI ATCGAT 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 2 cut(s) 12, 351
BspT107I GGYRCC 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 89
BssMI GATC 4 cut(s) 4, 211, 352, 356
Bst4CI ACNGT 1 cut(s) 268
BstAFI CTTAAG 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 141, 279
BstF5I GGATG 2 cut(s) 100, 180
BstKTI GATC 4 cut(s) 7, 214, 355, 359
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 4, 211, 352, 356
BstNSI RCATGY 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 59
Bsu15I ATCGAT 1 cut(s) 355
BsuTUI ATCGAT 1 cut(s) 355
BtsCI GGATG 2 cut(s) 100, 180
BveI ACCTGC 1 cut(s) 41
ClaI ATCGAT 1 cut(s) 355
CviAII CATG 3 cut(s) 169, 206, 226
CviJI RGCY 3 cut(s) 60, 112, 275
CviKI_1 RGCY 3 cut(s) 60, 112, 275
DdeI CTNAG 2 cut(s) 141, 279
DpnI GATC 4 cut(s) 6, 213, 354, 358
DpnII GATC 4 cut(s) 4, 211, 352, 356
FaeI CATG 3 cut(s) 172, 209, 229
FaiI YATR 6 cut(s) 39, 170, 207, 227, 312, 336
FatI CATG 3 cut(s) 168, 205, 225
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 107, 167
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 32
Hin1II CATG 3 cut(s) 172, 209, 229
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 136, 232, 283
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 264, 280
Hpy188III TCNNGA 3 cut(s) 11, 140, 366
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 47, 107
HpyF3I CTNAG 2 cut(s) 141, 279
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 3 cut(s) 172, 209, 229
Kzo9I GATC 4 cut(s) 4, 211, 352, 356
LpnPI CCDG 5 cut(s) 36, 110, 153, 235, 329
Lsp1109I GCAGC 1 cut(s) 59
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 5 cut(s) 84, 127, 164, 268, 316
MalI GATC 4 cut(s) 6, 213, 354, 358
MboI GATC 4 cut(s) 4, 211, 352, 356
MluCI AATT 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 7, 50, 190, 303
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 2 cut(s) 62, 90
MspCI CTTAAG 1 cut(s) 89
NdeII GATC 4 cut(s) 4, 211, 352, 356
NlaIII CATG 3 cut(s) 172, 209, 229
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 84, 127
NspI RCATGY 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 3 cut(s) 136, 232, 283
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 62, 90
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 4 cut(s) 4, 211, 352, 356
SetI ASST 7 cut(s) 55, 114, 129, 250, 295, 335, 348
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 34
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 55, 289, 355
TasI AATT 1 cut(s) 34
TfiI GAWTC 3 cut(s) 136, 232, 283
Tru1I TTAA 2 cut(s) 62, 90
Tru9I TTAA 2 cut(s) 62, 90
TseFI GTSAC 2 cut(s) 84, 127
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 2 cut(s) 84, 127
TspDTI ATGAA 2 cut(s) 169, 185
Van91I CCANNNNNTGG 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 89
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.