pycom17g22360

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000255
Physical Location & Seq
Forward (+)
20768985 .. 20769773
789 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 789 bp
ATGGCGGACAGGTGGCTGAGCTTCAGTGGAAGAGAATGGTCCGGCAAGTCCACCATCGCGGCAGGTGCTCTGCTTCCACATGAGATCATAGAGTCTGTGAATCATAGAGATGGCGGACAGGTGGCTGAGCTTCAGTGGAAGAGCATGGTGGATGATTTGTTGAAGCAAGGGAAGATGAAGAATTGTTTGGCTGTTTGCGATGTGTCAGGAAGCATGAATGGGACTCCCATGGAGGTGTCCGTGGCTTTAGGATTGCTAGTGTCCGAATTGAGTGACGAGCCGTGGAAGGGGAAAGTCATTACTTTCAGCCAAAATCCTCAGCTCCATTTCACACACGGCAGTGATCTGCGCTCGAAGTGTGACTTTATTAGGAGGATGGAATGGGGCATGAACACTAATTTTCAAAAGGTTTTTGATTTGCTACTTGATGTGGCGGTGAAGGGGAGATTGAAGCCAGAGCAGATGATAAGGAGGATCTTCGTGTTCAGCGACATGGAGTTTGACCAGGCTTCGAGTAGTAGGCGATGGGAGACTGATTATCAGACAATACAGAGGAAGTATAGAGAGGGAGGGTCTGGGAATGCAGTGCCACAGATTGTGTTCTGGAATCTGAGGCACTCAATGTCTACGCCAGTGCCTATCACGCAACCAGGGGTGGCATTGTTGAGTGGCTTCTCCAAGAATTTGATGAAGTTGTTCTTGGATAACGAGGGAGAAGTTCGCCCGGACTTTGTCATCGAAGCAGCCATCTCTGGGGAAGAATATCAGAAGCTGGTTGTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

263

Amino Acids

29.58

Weight (kDa)

6.01

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 14 - 59 2.2e-08 Domain of unknown function (DUF2828)
DUF7788 PF25043 61 - 240 5.1e-78 Domain of unknown function (DUF7788)
VWA_2 PF13519 64 - 165 8.1e-06 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 626
AccII CGCG 1 cut(s) 59
AciI CCGC 4 cut(s) 5, 59, 114, 434
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 1 cut(s) 682
AcuI CTGAAG 2 cut(s) 7, 116
AfiI CCNNNNNNNGG 2 cut(s) 287, 753
AgsI TTSAA 3 cut(s) 163, 404, 451
AjnI CCWGG 2 cut(s) 504, 649
AjuI GAANNNNNNNTTGG 4 cut(s) 170, 202, 683, 715
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 4 cut(s) 21, 130, 322, 772
AluI AGCT 4 cut(s) 21, 130, 322, 772
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 772
ApeKI GCWGC 1 cut(s) 743
ApoI RAATTY 1 cut(s) 682
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp700I GAANNNNTTC 1 cut(s) 695
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 725
AsuHPI GGTGA 1 cut(s) 448
AvaII GGWCC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 755
BccI CCATC 5 cut(s) 62, 104, 370, 519, 755
BceAI ACGGC 2 cut(s) 265, 352
BciT130I CCWGG 2 cut(s) 506, 651
BcnI CCSGG 1 cut(s) 725
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 2 cut(s) 60, 744
BlpI GCTNAGC 2 cut(s) 17, 126
BlsI GCNGC 2 cut(s) 61, 745
Bme1390I CCNGG 3 cut(s) 506, 651, 725
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 3 cut(s) 506, 651, 725
Bpu10I CCTNAGC 1 cut(s) 318
Bpu1102I GCTNAGC 2 cut(s) 17, 126
BpuMI CCSGG 1 cut(s) 725
BsaJI CCNNGG 4 cut(s) 228, 240, 281, 650
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 753
Bse1I ACTGG 1 cut(s) 632
BseBI CCWGG 2 cut(s) 506, 651
BseDI CCNNGG 4 cut(s) 228, 240, 281, 650
BseGI GGATG 2 cut(s) 157, 381
BseLI CCNNNNNNNGG 2 cut(s) 287, 753
BseMII CTCAG 4 cut(s) 8, 117, 332, 602
BseNI ACTGG 1 cut(s) 632
BseXI GCAGC 1 cut(s) 755
Bsh1236I CGCG 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 2 cut(s) 42, 725
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 287, 753
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 84, 343, 474
Bsp1720I GCTNAGC 2 cut(s) 17, 126
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 4 cut(s) 5, 59, 114, 434
BspCNI CTCAG 4 cut(s) 9, 118, 331, 603
BspFNI CGCG 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 228, 240, 281, 650
BssMI GATC 3 cut(s) 84, 343, 474
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 2 cut(s) 506, 651
Bst6I CTCTTC 2 cut(s) 25, 134
BstDEI CTNAG 4 cut(s) 17, 126, 318, 611
BstDSI CCRYGG 3 cut(s) 228, 240, 281
BstF5I GGATG 2 cut(s) 157, 381
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 3 cut(s) 87, 346, 477
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 3 cut(s) 84, 343, 474
BstMWI GCNNNNNNNGC 3 cut(s) 65, 643, 778
BstNI CCWGG 2 cut(s) 506, 651
BstSCI CCNGG 3 cut(s) 504, 649, 723
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 755
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
BtgI CCRYGG 3 cut(s) 228, 240, 281
BtgZI GCGATG 3 cut(s) 40, 213, 538
BtsCI GGATG 2 cut(s) 157, 381
BtsI GCAGTG 2 cut(s) 346, 591
BtsIMutI CAGTG 5 cut(s) 31, 140, 346, 591, 639
BveI ACCTGC 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 772
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 39
CviAII CATG 6 cut(s) 80, 145, 214, 229, 388, 493
DdeI CTNAG 4 cut(s) 17, 126, 318, 611
DpnI GATC 3 cut(s) 86, 345, 476
DpnII GATC 3 cut(s) 84, 343, 474
Eam1104I CTCTTC 2 cut(s) 25, 134
EarI CTCTTC 2 cut(s) 25, 134
EciI GGCGGA 2 cut(s) 20, 129
Eco130I CCWWGG 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 7, 116
EcoRII CCWGG 2 cut(s) 504, 649
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 6 cut(s) 83, 148, 217, 232, 391, 496
FaiI YATR 9 cut(s) 81, 89, 105, 146, 215, 230, 389, 494, 561
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 683, 715
FaqI GGGAC 1 cut(s) 235
FatI CATG 6 cut(s) 79, 144, 213, 228, 387, 492
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 2 cut(s) 60, 744
FokI GGATG 2 cut(s) 164, 388
Fsp4HI GCNGC 2 cut(s) 60, 744
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 350
GluI GCNGC 2 cut(s) 60, 744
HapII CCGG 2 cut(s) 42, 725
HhaI GCGC 1 cut(s) 351
Hin1II CATG 6 cut(s) 83, 148, 217, 232, 391, 496
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 4 cut(s) 92, 100, 223, 607
HpaII CCGG 2 cut(s) 42, 725
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 2 cut(s) 51, 627
Hpy188I TCNGA 4 cut(s) 265, 543, 612, 768
Hpy188III TCNNGA 2 cut(s) 207, 604
Hpy8I GTNNAC 2 cut(s) 51, 627
HpyAV CCTTC 2 cut(s) 280, 433
HpyCH4V TGCA 1 cut(s) 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 643, 778
HpyF3I CTNAG 4 cut(s) 17, 126, 318, 611
Hsp92II CATG 6 cut(s) 83, 148, 217, 232, 391, 496
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 84, 343, 474
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 327
Lsp1109I GCAGC 1 cut(s) 755
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 272, 359
MalI GATC 3 cut(s) 86, 345, 476
MboI GATC 3 cut(s) 84, 343, 474
MboII GAAGA 6 cut(s) 42, 151, 184, 190, 469, 770
MflI RGATCY 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 4 cut(s) 181, 266, 397, 682
MlyI GAGTC 2 cut(s) 101, 217
MnlI CCTC 9 cut(s) 226, 327, 366, 465, 546, 559, 563, 606, 703
MroXI GAANNNNTTC 1 cut(s) 695
MslI CAYNNNNRTG 3 cut(s) 108, 233, 339
MspI CCGG 2 cut(s) 42, 725
MspR9I CCNGG 3 cut(s) 506, 651, 725
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 2 cut(s) 506, 651
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 65, 643, 778
NciI CCSGG 1 cut(s) 725
NcoI CCATGG 1 cut(s) 228
NdeII GATC 3 cut(s) 84, 343, 474
NlaIII CATG 6 cut(s) 83, 148, 217, 232, 391, 496
NmuCI GTSAC 2 cut(s) 272, 359
OliI CACNNNNGTG 1 cut(s) 339
PaqCI CACCTGC 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PctI GAATGC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 2 cut(s) 100, 607
PflFI GACNNNGTC 1 cut(s) 731
PkrI GCNGC 2 cut(s) 61, 745
PleI GAGTC 2 cut(s) 100, 217
PpsI GAGTC 2 cut(s) 100, 217
Psp6I CCWGG 2 cut(s) 504, 649
PspGI CCWGG 2 cut(s) 504, 649
PspPI GGNCC 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 772
PsuI RGATCY 1 cut(s) 474
PsyI GACNNNGTC 1 cut(s) 731
RseI CAYNNNNRTG 3 cut(s) 108, 233, 339
SapI GCTCTTC 1 cut(s) 134
SatI GCNGC 2 cut(s) 60, 744
Sau3AI GATC 3 cut(s) 84, 343, 474
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 2 cut(s) 101, 217
ScrFI CCNGG 3 cut(s) 506, 651, 725
SduI GDGCHC 1 cut(s) 70
SetI ASST 9 cut(s) 14, 23, 67, 123, 132, 237, 324, 411, 774
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 3 cut(s) 108, 233, 339
Sse9I AATT 4 cut(s) 181, 266, 397, 682
SsiI CCGC 4 cut(s) 5, 59, 114, 434
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 504, 649, 723
StyI CCWWGG 1 cut(s) 228
TaqI TCGA 3 cut(s) 353, 512, 738
TasI AATT 4 cut(s) 181, 266, 397, 682
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 100, 607
TscAI CASTG 5 cut(s) 31, 140, 346, 591, 639
TseFI GTSAC 2 cut(s) 272, 359
TseI GCWGC 1 cut(s) 743
Tsp45I GTSAC 2 cut(s) 272, 359
TspDTI ATGAA 4 cut(s) 191, 230, 404, 704
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 5 cut(s) 31, 140, 346, 591, 639
Tth111I GACNNNGTC 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 682
XmiI GTMKAC 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.