FvH4_1g28912

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000253
Physical Location & Seq
Forward (+)
21363753 .. 21368542
4790 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28912.t1

Sequence Viewer

Length: 387 bp
ATGGGTCTGCCATCACGTCGTCGCTGGAGAAGGAAGAACCACCCGGGTCGACCCATCGAGTCTGTTCGAGTCGACAGAGACCCGAAGAACTTGAAGGCCGAAACTGATCAAATGGAGAGGGATTGGCGCAGCAACCAACTTGGTGATGGCACTATTCCTAGGTCCTCGCCGAGAAGAAATTTATCAACACTGGGAGGCTTGAAATTTGTTGTGTTCTTTCTCACTGTGCGAAATTGGGTAAGGATAACCCCCATTGCGTTCTTGCTTTCATCCCTACAATTCAAAGACCCTGATGCCGAAAGTATCTCCACTGTGCTTCAGAGTAATTTCGAAGGATTGCCCCTGCTCAAAAGCTTGTTTCTTCACAGTGTAACCGTCTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.71

Weight (kDa)

11.26

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 49, 72
AcsI RAATTY 2 cut(s) 178, 203
AcuI CTGAAG 1 cut(s) 302
AgsI TTSAA 3 cut(s) 94, 202, 283
AjiI CACGTC 1 cut(s) 17
AluBI AGCT 1 cut(s) 354
AluI AGCT 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 178, 203
AspA2I CCTAGG 1 cut(s) 158
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 2 cut(s) 44, 45
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 330
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 162
AvrII CCTAGG 1 cut(s) 158
BbvI GCAGC 1 cut(s) 141
BccI CCATC 3 cut(s) 19, 62, 140
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 2 cut(s) 44, 45
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 130
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 44, 45
Bme18I GGWCC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 162
BmrFI CCNGG 2 cut(s) 44, 45
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 46
Bpu14I TTCGAA 1 cut(s) 330
BpuMI CCSGG 2 cut(s) 44, 45
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 43, 158
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 43, 158
BseGI GGATG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 43
Bsp119I TTCGAA 1 cut(s) 330
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 43, 158
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 4 cut(s) 226, 313, 368, 376
BstBI TTCGAA 1 cut(s) 330
BstF5I GGATG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 42, 43
BstV1I GCAGC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 98
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 4 cut(s) 188, 222, 309, 373
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 162
Cfr9I CCCGGG 1 cut(s) 43
CviJI RGCY 3 cut(s) 98, 198, 354
CviKI_1 RGCY 3 cut(s) 98, 198, 354
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 2 cut(s) 49, 72
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 129
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 2 cut(s) 50, 73
HindII GTYRAC 2 cut(s) 50, 73
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 2 cut(s) 59, 69
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 50, 73
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 2 cut(s) 50, 73
Hpy99I CGWCG 2 cut(s) 21, 24
HpyAV CCTTC 3 cut(s) 24, 88, 326
HpyCH4III ACNGT 4 cut(s) 226, 313, 368, 376
HpyCH4IV ACGT 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 16
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 10, 57, 176, 303, 356
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 4 cut(s) 46, 97, 186, 353
MluCI AATT 5 cut(s) 178, 203, 232, 278, 325
MlyI GAGTC 2 cut(s) 68, 78
MnlI CCTC 3 cut(s) 111, 175, 188
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 44, 45
NciI CCSGG 2 cut(s) 44, 45
NdeII GATC 1 cut(s) 106
NmeAIII GCCGAG 1 cut(s) 195
NspV TTCGAA 1 cut(s) 330
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 2 cut(s) 67, 77
PpsI GAGTC 2 cut(s) 67, 77
PpuMI RGGWCCY 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 162
PspPI GGNCC 1 cut(s) 162
PspPPI RGGWCCY 1 cut(s) 162
SalI GTCGAC 2 cut(s) 48, 71
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 2 cut(s) 68, 78
ScrFI CCNGG 2 cut(s) 44, 45
SetI ASST 3 cut(s) 19, 164, 356
SfaNI GCATC 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 330
SinI GGWCC 1 cut(s) 162
SmaI CCCGGG 1 cut(s) 45
Sse9I AATT 5 cut(s) 178, 203, 232, 278, 325
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 42, 43
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 4 cut(s) 226, 313, 368, 376
TaiI ACGT 1 cut(s) 19
TaqI TCGA 5 cut(s) 49, 57, 67, 72, 330
TasI AATT 5 cut(s) 178, 203, 232, 278, 325
TscAI CASTG 4 cut(s) 195, 229, 316, 373
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 258
TspMI CCCGGG 1 cut(s) 43
TspRI CASTG 4 cut(s) 195, 229, 316, 373
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 2 cut(s) 178, 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmaI CCCGGG 1 cut(s) 43
XmaJI CCTAGG 1 cut(s) 158
XmiI GTMKAC 2 cut(s) 49, 72
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.