Rmu_sc0015817.1_g000001

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015817.1
OG0000253
Physical Location & Seq
Forward (+)
18 .. 1562
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015817.1_g000001.1.cds

Sequence Viewer

Length: 1101 bp
atggttttcaggaccaataaatctgtcgtgcatcgccatatctctgtagcctgtgaaaaagaccgttttttgcttgatgacgacgaattgcctgatgtgttatttgaggtcctcgtttgtatgctttctgtagtgctgcctgtgcgagttggcgaaagtcttttccttgagccccattatccgaataggtttgttcgtcagtttggtcttaatcagagtgttccctccaacaaactatcctttagtgtttccaaaaggcagcaatgtggtgttgatgatctgttgagggcacagattatcctatataggaagaagactacctcttgtttctttatcccacgttcttctcgttctggacagtgtacatggtggtactgcagatggtggtcgagagcttgtactccttacttggggctatcggtgtccaaaactttcacgactttgaacgagcgccctcctgaaaagccacaacaaaggctcctcgaaaagtcttgtgatggagcttcttgttctaaggccagccgggcccatcccacagatgaacgtggtggacgcaaaagagttaggcttgaaaaggtggttgaagagactattgttatcccagtgaagtcttcttcaaacgaactgccgtccttcaagaaatattacctcattgctcaggttgtggacatttacgctaaaatttcttcatcttccattccaaaggaactattagtccatgtttcggatatcagattaagccttgacatgcttcgccctacaattaagcctctgaaagctggaaagtcgcagcttgaagcgttcgtaactgctattaagatgatgatagaggtggcggaccagtcattagctactactggggtccttgagcagaaaactaccatggatgtgaacttgaggagtggactgatggattccttgaaagagcatgatgaaagaggccaaaagcttcaagaagatagagctgcttatatggtggagaaactcccggagattgagcaggctacggcttcgtataggttggaaacagaggcgtatcagagcctgtttgattctttgctcccgttattccatgtgtgcaccaccccagtacagacttga

Protein Analysis

366

Amino Acids

41.7

Weight (kDa)

8.9

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 836
AcsI RAATTY 1 cut(s) 681
AfaI GTAC 4 cut(s) 364, 374, 400, 1092
AfiI CCNNNNNNNGG 2 cut(s) 410, 724
AgsI TTSAA 8 cut(s) 445, 572, 584, 618, 637, 797, 922, 953
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
AluBI AGCT 7 cut(s) 395, 503, 779, 793, 851, 949, 965
AluI AGCT 7 cut(s) 395, 503, 779, 793, 851, 949, 965
Alw21I GWGCWC 1 cut(s) 1082
Alw26I GTCTC 1 cut(s) 581
Alw44I GTGCAC 1 cut(s) 1078
AlwNI CAGNNNCTG 1 cut(s) 1045
AoxI GGCC 3 cut(s) 516, 525, 940
ApaI GGGCCC 1 cut(s) 529
ApaLI GTGCAC 1 cut(s) 1078
ApeKI GCWGC 4 cut(s) 136, 259, 790, 965
ApoI RAATTY 1 cut(s) 681
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 6 cut(s) 12, 109, 525, 526, 838, 862
AsuC2I CCSGG 2 cut(s) 524, 989
AvaII GGWCC 4 cut(s) 12, 109, 838, 862
BaeGI GKGCMC 3 cut(s) 292, 529, 1082
BanII GRGCYC 2 cut(s) 174, 529
BbsI GAAGAC 2 cut(s) 320, 603
Bbv12I GWGCWC 1 cut(s) 1082
BbvI GCAGC 4 cut(s) 123, 271, 802, 952
BccI CCATC 4 cut(s) 375, 491, 537, 904
BceAI ACGGC 2 cut(s) 613, 1023
BcnI CCSGG 2 cut(s) 524, 989
BcoDI GTCTC 1 cut(s) 581
BfmI CTRYAG 3 cut(s) 45, 129, 376
BfoI RGCGCY 1 cut(s) 454
BglI GCCNNNNNGGC 1 cut(s) 524
BisI GCNGC 4 cut(s) 137, 260, 791, 966
BlsI GCNGC 4 cut(s) 138, 261, 792, 967
Bme1390I CCNGG 2 cut(s) 524, 989
Bme18I GGWCC 4 cut(s) 12, 109, 838, 862
BmgT120I GGNCC 6 cut(s) 12, 109, 525, 526, 838, 862
BmiI GGNNCC 3 cut(s) 479, 527, 863
BmrFI CCNGG 2 cut(s) 524, 989
BmrI ACTGGG 3 cut(s) 596, 867, 1082
BmsI GCATC 1 cut(s) 40
BmuI ACTGGG 3 cut(s) 596, 867, 1082
BpiI GAAGAC 2 cut(s) 320, 603
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 3 cut(s) 188, 887, 916
BpuMI CCSGG 2 cut(s) 524, 989
BsaJI CCNNGG 1 cut(s) 882
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 724
Bse1I ACTGG 4 cut(s) 602, 841, 862, 1088
Bse3DI GCAATG 2 cut(s) 269, 651
BseDI CCNNGG 1 cut(s) 882
BseGI GGATG 2 cut(s) 529, 892
BseLI CCNNNNNNNGG 2 cut(s) 410, 724
BseMI GCAATG 2 cut(s) 269, 651
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 4 cut(s) 602, 841, 862, 1088
BseRI GAGGAG 2 cut(s) 470, 913
BseSI GKGCMC 3 cut(s) 292, 529, 1082
BseXI GCAGC 4 cut(s) 123, 271, 802, 952
BshFI GGCC 3 cut(s) 518, 527, 942
BsiHKAI GWGCWC 1 cut(s) 1082
BsiSI CCGG 2 cut(s) 523, 989
BslI CCNNNNNNNGG 2 cut(s) 410, 724
BsmAI GTCTC 1 cut(s) 581
BsnI GGCC 3 cut(s) 518, 527, 942
Bsp120I GGGCCC 1 cut(s) 525
Bsp1286I GDGCHC 4 cut(s) 174, 292, 529, 1082
Bsp1407I TGTACA 1 cut(s) 362
Bsp143I GATC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 1 cut(s) 836
BspANI GGCC 3 cut(s) 518, 527, 942
BspCNI CTCAG 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 479, 527, 863
BspMAI CTGCAG 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 269, 651
BsrGI TGTACA 1 cut(s) 362
BsrI ACTGG 4 cut(s) 602, 841, 862, 1088
BssECI CCNNGG 1 cut(s) 882
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 882
Bst4CI ACNGT 2 cut(s) 65, 360
Bst6I CTCTTC 1 cut(s) 579
BstAUI TGTACA 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 520, 1002
BstDEI CTNAG 2 cut(s) 513, 657
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 2 cut(s) 529, 892
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 142, 524
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 2 cut(s) 522, 987
BstSFI CTRYAG 3 cut(s) 45, 129, 376
BstSLI GKGCMC 3 cut(s) 292, 529, 1082
BstV1I GCAGC 4 cut(s) 123, 271, 802, 952
BstV2I GAAGAC 2 cut(s) 320, 603
BsuRI GGCC 3 cut(s) 518, 527, 942
BtgI CCRYGG 1 cut(s) 882
BtgZI GCGATG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 529, 892
BtsIMutI CAGTG 2 cut(s) 365, 609
Cac8I GCNNGC 2 cut(s) 520, 1002
CaiI CAGNNNCTG 1 cut(s) 1045
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 6 cut(s) 12, 109, 525, 526, 838, 862
CseI GACGC 1 cut(s) 561
Csp6I GTAC 4 cut(s) 363, 373, 399, 1091
CviAII CATG 6 cut(s) 366, 719, 748, 883, 929, 1073
CviQI GTAC 4 cut(s) 363, 373, 399, 1091
DdeI CTNAG 2 cut(s) 513, 657
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
EciI GGCGGA 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 882
Eco24I GRGCYC 2 cut(s) 174, 529
Eco32I GATATC 1 cut(s) 730
Eco47I GGWCC 4 cut(s) 12, 109, 838, 862
EcoO109I RGGNCCY 2 cut(s) 109, 862
EcoRV GATATC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 882
EcoT38I GRGCYC 2 cut(s) 174, 529
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 6 cut(s) 369, 722, 751, 886, 932, 1076
FatI CATG 6 cut(s) 365, 718, 747, 882, 928, 1072
Fnu4HI GCNGC 4 cut(s) 137, 260, 791, 966
FokI GGATG 2 cut(s) 516, 899
FriOI GRGCYC 2 cut(s) 174, 529
Fsp4HI GCNGC 4 cut(s) 137, 260, 791, 966
GlaI GCGC 1 cut(s) 452
GluI GCNGC 4 cut(s) 137, 260, 791, 966
HaeII RGCGCY 1 cut(s) 454
HaeIII GGCC 3 cut(s) 518, 527, 942
HapII CCGG 2 cut(s) 523, 989
HgaI GACGC 1 cut(s) 561
HhaI GCGC 1 cut(s) 453
Hin1II CATG 6 cut(s) 369, 722, 751, 886, 932, 1076
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 2 cut(s) 914, 1052
HpaII CCGG 2 cut(s) 523, 989
Hpy166II GTNNAC 6 cut(s) 363, 551, 667, 892, 905, 1080
Hpy188I TCNGA 6 cut(s) 183, 216, 727, 734, 774, 1041
Hpy188III TCNNGA 7 cut(s) 10, 354, 390, 436, 458, 637, 953
Hpy8I GTNNAC 6 cut(s) 363, 551, 667, 892, 905, 1080
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 643
HpyCH4III ACNGT 2 cut(s) 65, 360
HpyCH4IV ACGT 2 cut(s) 340, 544
HpyCH4V TGCA 3 cut(s) 31, 378, 1080
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 524
HpyF3I CTNAG 2 cut(s) 513, 657
HpySE526I ACGT 2 cut(s) 340, 544
Hsp92II CATG 6 cut(s) 369, 722, 751, 886, 932, 1076
HspAI GCGC 1 cut(s) 451
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 3 cut(s) 483, 500, 1065
Lsp1109I GCAGC 4 cut(s) 123, 271, 802, 952
LweI GCATC 1 cut(s) 40
MaeII ACGT 2 cut(s) 340, 544
MaeIII GTNAC 1 cut(s) 805
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 9 cut(s) 322, 325, 336, 596, 603, 606, 678, 684, 968
MhlI GDGCHC 4 cut(s) 174, 292, 529, 1082
MluCI AATT 3 cut(s) 86, 681, 762
MmeI TCCRAC 2 cut(s) 252, 1002
MseI TTAA 4 cut(s) 210, 737, 765, 816
MslI CAYNNNNRTG 1 cut(s) 887
MspI CCGG 2 cut(s) 523, 989
MspR9I CCNGG 2 cut(s) 524, 989
MwoI GCNNNNNNNGC 2 cut(s) 142, 524
NciI CCSGG 2 cut(s) 524, 989
NcoI CCATGG 1 cut(s) 882
NdeII GATC 1 cut(s) 277
NlaIII CATG 6 cut(s) 369, 722, 751, 886, 932, 1076
NlaIV GGNNCC 3 cut(s) 479, 527, 863
NspI RCATGY 1 cut(s) 751
PcsI WCGNNNNNNNCGW 1 cut(s) 346
PfeI GAWTC 2 cut(s) 914, 1052
PfoI TCCNGGA 1 cut(s) 987
PkrI GCNGC 4 cut(s) 138, 261, 792, 967
PpuMI RGGWCCY 2 cut(s) 109, 862
Psp5II RGGWCCY 2 cut(s) 109, 862
PspN4I GGNNCC 3 cut(s) 479, 527, 863
PspOMI GGGCCC 1 cut(s) 525
PspPI GGNCC 6 cut(s) 12, 109, 525, 526, 838, 862
PspPPI RGGWCCY 2 cut(s) 109, 862
PstI CTGCAG 1 cut(s) 380
PstNI CAGNNNCTG 1 cut(s) 1045
RsaI GTAC 4 cut(s) 364, 374, 400, 1092
RsaNI GTAC 4 cut(s) 363, 373, 399, 1091
RseI CAYNNNNRTG 1 cut(s) 887
SaqAI TTAA 4 cut(s) 210, 737, 765, 816
SatI GCNGC 4 cut(s) 137, 260, 791, 966
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 6 cut(s) 12, 109, 525, 526, 838, 862
ScrFI CCNGG 2 cut(s) 524, 989
SduI GDGCHC 4 cut(s) 174, 292, 529, 1082
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 3 cut(s) 45, 129, 376
SfiI GGCCNNNNNGGCC 1 cut(s) 524
SinI GGWCC 4 cut(s) 12, 109, 838, 862
SmiMI CAYNNNNRTG 1 cut(s) 887
SmlI CTYRAG 3 cut(s) 167, 866, 895
SmoI CTYRAG 3 cut(s) 167, 866, 895
Sse9I AATT 3 cut(s) 86, 681, 762
SsiI CCGC 1 cut(s) 836
SspI AATATT 1 cut(s) 644
StyD4I CCNGG 2 cut(s) 522, 987
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 2 cut(s) 65, 360
TaiI ACGT 2 cut(s) 343, 547
TaqI TCGA 2 cut(s) 389, 483
TasI AATT 3 cut(s) 86, 681, 762
TatI WGTACW 3 cut(s) 362, 398, 1090
TfiI GAWTC 2 cut(s) 914, 1052
Tru1I TTAA 4 cut(s) 210, 737, 765, 816
Tru9I TTAA 4 cut(s) 210, 737, 765, 816
TscAI CASTG 2 cut(s) 365, 609
TseI GCWGC 4 cut(s) 136, 259, 790, 965
TspDTI ATGAA 3 cut(s) 555, 678, 948
TspRI CASTG 2 cut(s) 365, 609
VneI GTGCAC 1 cut(s) 1078
VpaK11BI GGWCC 4 cut(s) 12, 109, 838, 862
XapI RAATTY 1 cut(s) 681
XceI RCATGY 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.