Rorug01G0056500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000253
Physical Location & Seq
Reverse (-)
9347005 .. 9349763
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0056500.1

Sequence Viewer

Length: 780 bp
ATGTATGACAATATAGAAGACTTTCTGCAGAATAATAATAATCTCATGCCAGTAAGGTACTCTTACTCAAATATCAAAAAGATGACAAGAGATTTCAAGGACAAATTGGGAGAAGGAGGCTATGGATCTGTATACAAGGCAAAGCTTCGAAGTGGTCGTCTTGTAGCCATTAAGATGTTGGGCAAGTCCAAAGCTAACGGGCAAGAATTTATCAATGAAGTCGCTACAATAGGAAGGATTCATCATGTTAACGTAGTGCAACTTCTTGGCTACCGTGTTGACGGTTCAAAACGTGCTCTTGTGTATGATTTCATGCCTAAAGGTTCTCTAGAAAAATATATTTTTCCTCAACAAGGAGTGATCTCCTTAAGTTGTGAGAAAATATTTGAAGTAGCACTTAGAGTGGCTCGTGGTATTGAATATCTACATCGAGGATGTACCATGCAAATTTTGCACTTTGACATCAATCCTCACAACATTCTCTTAGATGAGAATTTTTCTCCGAAGGTTTCTGATTTTGGGTTAGCAAGGCTATGTCCATTAGATAATACTCCGGAATTATTCTATAAGAATATTGGAGGTGTTTCATACAAAGCCGACGTATATAGTTTTAGAATGCTATTAATGGAAATGGCTGACAGAAGGAAGAACTTGAACGCAACCATAGAGAAATCAAGCCAAATCTATTTTCCTACATGGGTGTCTGAACAATTGAGTGATAGAAAGGATATAGAAATAGAAGATGCCACAGAGGAGGAAAAGAAGACAGTAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

259

Amino Acids

29.79

Weight (kDa)

8.9

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 32 - 219 3.3e-31 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 33 - 219 5.8e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 553
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 3 cut(s) 206, 447, 493
AfaI GTAC 2 cut(s) 59, 439
AfiI CCNNNNNNNGG 1 cut(s) 353
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 5 cut(s) 97, 288, 389, 419, 655
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 2 cut(s) 145, 194
AluI AGCT 2 cut(s) 145, 194
Alw21I GWGCWC 1 cut(s) 298
AlwI GGATC 1 cut(s) 133
Aor13HI TCCGGA 1 cut(s) 553
ApoI RAATTY 3 cut(s) 206, 447, 493
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AseI ATTAAT 1 cut(s) 623
Asp700I GAANNNNTTC 1 cut(s) 21
AsuII TTCGAA 1 cut(s) 148
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 2 cut(s) 24, 770
Bbv12I GWGCWC 1 cut(s) 298
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 26
BfrI CTTAAG 1 cut(s) 367
BmsI GCATC 1 cut(s) 733
BpiI GAAGAC 2 cut(s) 24, 770
Bpu14I TTCGAA 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 50
BseAI TCCGGA 1 cut(s) 553
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 767
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 554
BslI CCNNNNNNNGG 1 cut(s) 353
BsmI GAATGC 1 cut(s) 621
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 298
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 2 cut(s) 125, 360
BspEI TCCGGA 1 cut(s) 553
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 50
BssMI GATC 2 cut(s) 125, 360
BssNAI GTATAC 1 cut(s) 133
BssSI CACGAG 1 cut(s) 408
Bst1107I GTATAC 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 275, 284, 769
BstAFI CTTAAG 1 cut(s) 367
BstAPI GCANNNNNTGC 1 cut(s) 451
BstBI TTCGAA 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 398, 484
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 440
BstKTI GATC 2 cut(s) 128, 363
BstMBI GATC 2 cut(s) 125, 360
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 26
BstV2I GAAGAC 2 cut(s) 24, 770
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BstZ17I GTATAC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 440
Csp6I GTAC 2 cut(s) 58, 438
CviAII CATG 5 cut(s) 46, 245, 313, 442, 696
CviQI GTAC 2 cut(s) 58, 438
DdeI CTNAG 2 cut(s) 398, 484
DpnI GATC 2 cut(s) 127, 362
DpnII GATC 2 cut(s) 125, 360
EcoNI CCTNNNNNAGG 1 cut(s) 351
FaeI CATG 5 cut(s) 49, 248, 316, 445, 699
FalI AAGNNNNNCTT 4 cut(s) 46, 78, 381, 413
FatI CATG 5 cut(s) 45, 244, 312, 441, 695
FblI GTMKAC 1 cut(s) 132
FokI GGATG 1 cut(s) 447
FspBI CTAG 1 cut(s) 329
HapII CCGG 1 cut(s) 554
Hin1II CATG 5 cut(s) 49, 248, 316, 445, 699
HincII GTYRAC 2 cut(s) 250, 280
HindII GTYRAC 2 cut(s) 250, 280
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 238
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 554
Hpy166II GTNNAC 3 cut(s) 133, 250, 280
Hpy188I TCNGA 3 cut(s) 504, 514, 706
Hpy188III TCNNGA 2 cut(s) 329, 554
Hpy8I GTNNAC 3 cut(s) 133, 250, 280
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 4 cut(s) 107, 228, 499, 636
HpyCH4III ACNGT 3 cut(s) 275, 284, 769
HpyCH4IV ACGT 3 cut(s) 252, 292, 600
HpyCH4V TGCA 4 cut(s) 28, 259, 445, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 2 cut(s) 398, 484
HpySE526I ACGT 3 cut(s) 252, 292, 600
Hsp92II CATG 5 cut(s) 49, 248, 316, 445, 699
Kpn2I TCCGGA 1 cut(s) 553
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 125, 360
LpnPI CCDG 2 cut(s) 63, 567
LweI GCATC 1 cut(s) 733
MaeI CTAG 1 cut(s) 329
MaeII ACGT 3 cut(s) 252, 292, 600
MalI GATC 2 cut(s) 127, 362
MboI GATC 2 cut(s) 125, 360
MboII GAAGA 4 cut(s) 29, 658, 752, 775
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 6 cut(s) 104, 206, 447, 493, 557, 710
MnlI CCTC 7 cut(s) 110, 357, 425, 480, 572, 745, 748
MroI TCCGGA 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 4 cut(s) 171, 249, 368, 623
MslI CAYNNNNRTG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 367
MspI CCGG 1 cut(s) 554
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 621
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeII GATC 2 cut(s) 125, 360
NlaIII CATG 5 cut(s) 49, 248, 316, 445, 699
NspV TTCGAA 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PctI GAATGC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 623
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 2 cut(s) 59, 439
RsaNI GTAC 2 cut(s) 58, 438
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 4 cut(s) 171, 249, 368, 623
Sau3AI GATC 2 cut(s) 125, 360
SduI GDGCHC 1 cut(s) 298
SetI ASST 9 cut(s) 59, 147, 196, 255, 295, 325, 510, 583, 603
SfaNI GCATC 1 cut(s) 733
SfcI CTRYAG 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 6 cut(s) 104, 206, 447, 493, 557, 710
SspI AATATT 2 cut(s) 384, 574
SspMI CTAG 1 cut(s) 329
TaaI ACNGT 3 cut(s) 275, 284, 769
TaiI ACGT 3 cut(s) 255, 295, 603
TaqI TCGA 2 cut(s) 148, 430
TasI AATT 6 cut(s) 104, 206, 447, 493, 557, 710
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 4 cut(s) 171, 249, 368, 623
Tru9I TTAA 4 cut(s) 171, 249, 368, 623
TspDTI ATGAA 4 cut(s) 230, 231, 301, 576
Vha464I CTTAAG 1 cut(s) 367
VspI ATTAAT 1 cut(s) 623
XagI CCTNNNNNAGG 1 cut(s) 351
XapI RAATTY 3 cut(s) 206, 447, 493
XbaI TCTAGA 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.