Rroxscaffold_5G00356270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000253
Physical Location & Seq
Reverse (-)
35495078 .. 35498630
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356270.1

Sequence Viewer

Length: 312 bp
ATGGCGGAGAAACTCCCGGAGATTGAGCAGGCTATGGCTTCATACAACAGAAGCACCATTTTCAGCATATCTGCTTGCCCCTGCAGAGGGCTCAGGAGGCTTAATCCCAGAATGGTGCTGCAGCAATCAGAGTCTGAGAACCATGGAAGGGCCAGTAAGGTGGCATTTGAGCATGTGCTTGCCCAGATTGCTGATGGGGAATTCCAGGGTCATGTGATGTGGATTCTACCTTTTGTGACATTGTGCAGCATTCTGTTCGTATTGCCATTGCAGCTGCTGATGCTTCTTTTTCATTCTCTGAAACTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.67

Weight (kDa)

7.8

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 86, 87, 148
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
AlwNI CAGNNNCTG 2 cut(s) 134, 277
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 5 cut(s) 118, 121, 246, 271, 274
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 17
BanII GRGCYC 1 cut(s) 93
BbvI GCAGC 5 cut(s) 105, 133, 258, 261, 283
BccI CCATC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 1 cut(s) 17
BfmI CTRYAG 2 cut(s) 82, 119
BisI GCNGC 5 cut(s) 119, 122, 247, 272, 275
BlsI GCNGC 5 cut(s) 120, 123, 248, 273, 276
Bme1390I CCNGG 2 cut(s) 17, 206
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 17, 206
BmsI GCATC 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 142, 205
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 87, 148
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 142, 205
BseLI CCNNNNNNNGG 3 cut(s) 86, 87, 148
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 106, 126
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 5 cut(s) 105, 133, 258, 261, 283
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 86, 87, 148
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 105, 127
BspMAI CTGCAG 2 cut(s) 86, 123
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 142, 205
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 30, 76, 180
BstDEI CTNAG 2 cut(s) 92, 135
BstDSI CCRYGG 1 cut(s) 142
BstMWI GCNNNNNNNGC 4 cut(s) 97, 188, 271, 280
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 15, 204
BstSFI CTRYAG 2 cut(s) 82, 119
BstV1I GCAGC 5 cut(s) 105, 133, 258, 261, 283
BstXI CCANNNNNNTGG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 30, 76, 180
CaiI CAGNNNCTG 2 cut(s) 134, 277
Cfr13I GGNCC 1 cut(s) 150
CviAII CATG 3 cut(s) 143, 173, 212
CviJI RGCY 6 cut(s) 32, 38, 91, 100, 152, 274
CviKI_1 RGCY 6 cut(s) 32, 38, 91, 100, 152, 274
DdeI CTNAG 2 cut(s) 92, 135
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 146, 176, 215
FaiI YATR 6 cut(s) 35, 43, 68, 144, 174, 213
FatI CATG 3 cut(s) 142, 172, 211
Fnu4HI GCNGC 5 cut(s) 119, 122, 247, 272, 275
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 119, 122, 247, 272, 275
GluI GCNGC 5 cut(s) 119, 122, 247, 272, 275
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 17
Hin1II CATG 3 cut(s) 146, 176, 215
HinfI GANTC 2 cut(s) 131, 223
HpaII CCGG 1 cut(s) 17
Hpy188I TCNGA 3 cut(s) 130, 136, 300
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 84, 121, 246, 271
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 188, 271, 280
HpyF3I CTNAG 2 cut(s) 92, 135
Hsp92II CATG 3 cut(s) 146, 176, 215
LpnPI CCDG 9 cut(s) 14, 30, 79, 94, 121, 166, 191, 197, 218
Lsp1109I GCAGC 5 cut(s) 105, 133, 258, 261, 283
LweI GCATC 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 2 cut(s) 80, 90
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 17, 206
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 97, 188, 271, 280
NciI CCSGG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 142
NlaIII CATG 3 cut(s) 146, 176, 215
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 176
PctI GAATGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 5 cut(s) 120, 123, 248, 273, 276
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 150
PstI CTGCAG 2 cut(s) 86, 123
PstNI CAGNNNCTG 2 cut(s) 134, 277
PvuII CAGCTG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 5 cut(s) 119, 122, 247, 272, 275
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 17, 206
SduI GDGCHC 1 cut(s) 93
SetI ASST 3 cut(s) 162, 232, 276
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 2 cut(s) 82, 119
Sse9I AATT 1 cut(s) 200
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 15, 204
StyI CCWWGG 1 cut(s) 142
TasI AATT 1 cut(s) 200
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 5 cut(s) 118, 121, 246, 271, 274
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 30, 281
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.