Rh5CG366900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000253
Physical Location & Seq
Reverse (-)
44741492 .. 44745271
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG366900.1

Sequence Viewer

Length: 444 bp
ATGGAGTGGACGAAGTCTATAATAAATGAGTTCAAAGACATTTTGGGGATTGTAGACATTTATGGTGCTATTGCTGTATCTCGCTTCCCTTACCATTACTCTCCAAACTCATTGAGGGCCTTCATTGAGCTGTGGGGGCCTTTAACAAACACCCTACATCATGGGAACGGGGAGATGGGAATAACTCTACGCGAATTGAAACTCATCGGAGGATTACCGATTTTGGGTGTTTCGTATGAGGAATTTATTCCTGTCAATGAAGAGCTATGTGATGGTGGACAATTCCCGTCTACCATTAATAATCTTCTACGCATCCATTTTGAGCTATGTTCTTTTCATAAGAGGGATTTTGTTTACTGGGATCAATGGCTCAATCATTTTTATCGGGGTGAACTGTTGTATGCTGCTTACGGTGAAAATCGCAAACGAGCACCTTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

147

Amino Acids

17.1

Weight (kDa)

5.83

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 19 - 129 6e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 54, 290
AccII CGCG 1 cut(s) 192
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 2 cut(s) 34, 199
AluBI AGCT 3 cut(s) 130, 265, 325
AluI AGCT 3 cut(s) 130, 265, 325
Alw21I GWGCWC 1 cut(s) 433
AlwI GGATC 1 cut(s) 369
AoxI GGCC 2 cut(s) 117, 137
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 242
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 117, 137
AsuHPI GGTGA 2 cut(s) 401, 425
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 169, 266
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 117, 137
BmiI GGNNCC 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 119, 139
BsiHKAI GWGCWC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 224
BsnI GGCC 2 cut(s) 119, 139
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 1 cut(s) 361
BspANI GGCC 2 cut(s) 119, 139
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 362
BssMI GATC 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 396, 413
Bst6I CTCTTC 1 cut(s) 255
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 391
BsuRI GGCC 2 cut(s) 119, 139
BtsCI GGATG 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 117, 137
CviAII CATG 2 cut(s) 161, 441
CviJI RGCY 6 cut(s) 119, 130, 139, 265, 325, 370
CviKI_1 RGCY 6 cut(s) 119, 130, 139, 265, 325, 370
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EcoO109I RGGNCCY 2 cut(s) 117, 137
FaeI CATG 2 cut(s) 164, 444
FaiI YATR 9 cut(s) 20, 63, 162, 237, 268, 328, 339, 402, 442
FatI CATG 2 cut(s) 160, 440
FblI GTMKAC 2 cut(s) 54, 290
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 405
GluI GCNGC 1 cut(s) 405
HaeIII GGCC 2 cut(s) 119, 139
Hin1II CATG 2 cut(s) 164, 444
HphI GGTGA 2 cut(s) 401, 425
Hpy166II GTNNAC 6 cut(s) 9, 55, 278, 291, 355, 392
Hpy188I TCNGA 1 cut(s) 209
Hpy8I GTNNAC 6 cut(s) 9, 55, 278, 291, 355, 392
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 396, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92II CATG 2 cut(s) 164, 444
Kzo9I GATC 1 cut(s) 361
LguI GCTCTTC 1 cut(s) 255
LpnPI CCDG 2 cut(s) 264, 343
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 321
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 2 cut(s) 272, 296
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 3 cut(s) 194, 242, 281
MnlI CCTC 4 cut(s) 108, 203, 232, 336
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 2 cut(s) 143, 297
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeII GATC 1 cut(s) 361
NlaIII CATG 2 cut(s) 164, 444
NlaIV GGNNCC 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 2 cut(s) 117, 137
PsyI GACNNNGTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 143, 297
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 2 cut(s) 117, 137
SduI GDGCHC 1 cut(s) 433
SetI ASST 4 cut(s) 132, 267, 327, 436
SfaNI GCATC 1 cut(s) 321
SgeI CNNG 9 cut(s) 93, 173, 181, 203, 263, 298, 370, 398, 440
Sse9I AATT 3 cut(s) 194, 242, 281
TaaI ACNGT 2 cut(s) 396, 413
TasI AATT 3 cut(s) 194, 242, 281
Tru1I TTAA 2 cut(s) 143, 297
Tru9I TTAA 2 cut(s) 143, 297
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 3 cut(s) 112, 273, 326
Tth111I GACNNNGTC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 242
XmiI GTMKAC 2 cut(s) 54, 290
XmnI GAANNNNTTC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.