Rh2CG188300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000253
Physical Location & Seq
Forward (+)
17567334 .. 17568092
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG188300.1

Sequence Viewer

Length: 759 bp
ATGGATGCAAGCGGCCACATTTGTACCGAAAGAGCCCTTGATGCTCGTGGAAAGGTACTTGAACAAGGTCCAGAATATCACAGATCCTCATTCCTGAGCAGCATACCTATTCATCCACCTCCTAAAGACAGAGTTACTTGGGTTACCGAGGTACAAGTTCATTTAGGGTACCTTACTTTTGATCAGAGTTCCGAGGATCAAGTAATAAGAACCCGTCGAACTCATGGTGCATTATTTCAAGCTCGTACATTGGAAAAGGTCAATAATGATGAGGAAGGTGATTCCTTTACTCCTCAGGAAGATTTCTATCCTGTTCTTCATAACATGCTTAGAGACAAACAGGACTGGAAACATACTCCTTATTTCCGAGGAGTATCAACCTTTGAGCTTGGCACTCTGGAGTGGACTGATTCTATAATGAGAAAATTTGGAGGTATTTTGGAAAATGCAGGAATACTTGGTGCTGTTGGAGTCTCTTGTTTCCCCTACCACTATTCTACAAATACATGGAAGGCCTTTTGTGAATTATGGGGCCCACTAACCAATACACTGCACCATGGGAATGGAGAAATGGGCATTTCTCTATATGATATGAGAGTGATTGGAGGTTTACCAATTCTGGGGCATCCATATGAAGAATTTATCCCTGTCAATAATGAGCTGCATTGCAGTGAGCGCTATCCATCTACAGTTGCTGAGCTCTTGCGCATTCACTCAGTTGTGTATTTTTCACAAAAGGGATTTCATTTATTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

252

Amino Acids

28.69

Weight (kDa)

5.84

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 151 - 210 1.7e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 707
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 78, 204
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 2 cut(s) 425, 638
AfaI GTAC 5 cut(s) 25, 57, 153, 170, 247
AfeI AGCGCT 1 cut(s) 677
AfiI CCNNNNNNNGG 1 cut(s) 620
AgsI TTSAA 2 cut(s) 62, 239
AluBI AGCT 4 cut(s) 242, 388, 661, 700
AluI AGCT 4 cut(s) 242, 388, 661, 700
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 2 cut(s) 327, 478
AlwI GGATC 2 cut(s) 78, 204
AlwNI CAGNNNCTG 1 cut(s) 695
Aor51HI AGCGCT 1 cut(s) 677
AoxI GGCC 3 cut(s) 13, 513, 532
ApaI GGGCCC 1 cut(s) 536
ApeKI GCWGC 2 cut(s) 99, 661
ApoI RAATTY 2 cut(s) 425, 638
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 2 cut(s) 678, 708
AspS9I GGNCC 3 cut(s) 68, 532, 533
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 536
BaeI ACNNNNGTAYC 2 cut(s) 7, 40
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 3 cut(s) 37, 536, 702
BauI CACGAG 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 111, 648
BccI CCATC 1 cut(s) 691
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 327, 478
BfmI CTRYAG 1 cut(s) 687
BfoI RGCGCY 1 cut(s) 679
BisI GCNGC 3 cut(s) 13, 100, 662
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 3 cut(s) 14, 101, 663
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 3 cut(s) 68, 532, 533
BmiI GGNNCC 3 cut(s) 170, 533, 534
BmsI GCATC 2 cut(s) 31, 634
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 696
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 4 cut(s) 147, 192, 367, 556
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 1 cut(s) 350
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 147, 192, 367, 556
BseGI GGATG 3 cut(s) 10, 112, 625
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 4 cut(s) 86, 308, 687, 729
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 2 cut(s) 282, 384
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 2 cut(s) 111, 648
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 3 cut(s) 15, 515, 534
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 702
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 327, 478
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 3 cut(s) 15, 515, 534
Bsp120I GGGCCC 1 cut(s) 532
Bsp1286I GDGCHC 3 cut(s) 37, 536, 702
Bsp143I GATC 3 cut(s) 83, 181, 196
Bsp1720I GCTNAGC 1 cut(s) 696
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 1 cut(s) 12
BspANI GGCC 3 cut(s) 15, 515, 534
BspCNI CTCAG 4 cut(s) 87, 307, 688, 728
BspLI GGNNCC 3 cut(s) 170, 533, 534
BspPI GGATC 2 cut(s) 78, 204
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 4 cut(s) 147, 192, 367, 556
BssMI GATC 3 cut(s) 83, 181, 196
BssSI CACGAG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 556
Bst2BI CACGAG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 5 cut(s) 95, 294, 329, 696, 715
BstDSI CCRYGG 1 cut(s) 556
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 3 cut(s) 10, 112, 625
BstH2I RGCGCY 1 cut(s) 679
BstHHI GCGC 2 cut(s) 678, 708
BstKTI GATC 3 cut(s) 86, 184, 199
BstMAI GTCTC 2 cut(s) 327, 478
BstMBI GATC 3 cut(s) 83, 181, 196
BstMWI GCNNNNNNNGC 2 cut(s) 41, 675
BstNSI RCATGY 1 cut(s) 328
BstPI GGTNACC 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 536
BstV1I GCAGC 2 cut(s) 111, 648
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 1 cut(s) 83
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 3 cut(s) 15, 515, 534
BtgI CCRYGG 1 cut(s) 556
BtsCI GGATG 3 cut(s) 10, 112, 625
BtsI GCAGTG 2 cut(s) 548, 676
BtsIMutI CAGTG 2 cut(s) 548, 676
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 2 cut(s) 678, 708
Cfr13I GGNCC 3 cut(s) 68, 532, 533
Csp6I GTAC 5 cut(s) 24, 56, 152, 169, 246
CviAII CATG 4 cut(s) 224, 325, 507, 557
CviJI RGCY 8 cut(s) 15, 35, 242, 388, 515, 534, 661, 700
CviKI_1 RGCY 8 cut(s) 15, 35, 242, 388, 515, 534, 661, 700
CviQI GTAC 5 cut(s) 24, 56, 152, 169, 246
DdeI CTNAG 5 cut(s) 95, 294, 329, 696, 715
DpnI GATC 3 cut(s) 85, 183, 198
DpnII GATC 3 cut(s) 83, 181, 196
EaeI YGGCCR 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 515
Eco24I GRGCYC 3 cut(s) 37, 536, 702
Eco47I GGWCC 1 cut(s) 68
Eco47III AGCGCT 1 cut(s) 677
Eco53kI GAGCTC 1 cut(s) 700
Eco81I CCTNAGG 1 cut(s) 294
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 532
EcoO65I GGTNACC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 3 cut(s) 37, 536, 702
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 4 cut(s) 227, 328, 510, 560
FatI CATG 4 cut(s) 223, 324, 506, 556
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 13, 100, 662
FokI GGATG 3 cut(s) 17, 99, 612
FriOI GRGCYC 3 cut(s) 37, 536, 702
Fsp4HI GCNGC 3 cut(s) 13, 100, 662
FspI TGCGCA 1 cut(s) 707
GlaI GCGC 2 cut(s) 677, 707
GluI GCNGC 3 cut(s) 13, 100, 662
GsuI CTGGAG 1 cut(s) 419
HaeII RGCGCY 1 cut(s) 679
HaeIII GGCC 3 cut(s) 15, 515, 534
HhaI GCGC 2 cut(s) 678, 708
Hin1II CATG 4 cut(s) 227, 328, 510, 560
Hin6I GCGC 2 cut(s) 676, 706
HinP1I GCGC 2 cut(s) 676, 706
HinfI GANTC 3 cut(s) 281, 410, 471
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 405, 611
Hpy188I TCNGA 3 cut(s) 186, 193, 368
Hpy188III TCNNGA 4 cut(s) 71, 94, 296, 398
Hpy8I GTNNAC 2 cut(s) 405, 611
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 2 cut(s) 269, 505
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4V TGCA 6 cut(s) 8, 230, 449, 553, 664, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 675
HpyF3I CTNAG 5 cut(s) 95, 294, 329, 696, 715
Hsp92II CATG 4 cut(s) 227, 328, 510, 560
HspAI GCGC 2 cut(s) 676, 706
KpnI GGTACC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 3 cut(s) 83, 181, 196
Lsp1109I GCAGC 2 cut(s) 111, 648
LweI GCATC 2 cut(s) 31, 634
MaeIII GTNAC 2 cut(s) 133, 142
MalI GATC 3 cut(s) 85, 183, 198
MboI GATC 3 cut(s) 83, 181, 196
MboII GAAGA 3 cut(s) 308, 311, 647
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 3 cut(s) 37, 536, 702
MluCI AATT 4 cut(s) 425, 524, 615, 638
MlyI GAGTC 1 cut(s) 480
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 9 cut(s) 97, 129, 142, 187, 265, 303, 362, 425, 599
MslI CAYNNNNRTG 3 cut(s) 561, 630, 669
Mva1269I GAATGC 1 cut(s) 708
MwoI GCNNNNNNNGC 2 cut(s) 41, 675
NcoI CCATGG 1 cut(s) 556
NdeI CATATG 1 cut(s) 631
NdeII GATC 3 cut(s) 83, 181, 196
NlaIII CATG 4 cut(s) 227, 328, 510, 560
NlaIV GGNNCC 3 cut(s) 170, 533, 534
NsbI TGCGCA 1 cut(s) 707
NspI RCATGY 1 cut(s) 328
PceI AGGCCT 1 cut(s) 515
PctI GAATGC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 281, 410
PkrI GCNGC 3 cut(s) 14, 101, 663
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 702
PspEI GGTNACC 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 170, 533, 534
PspOMI GGGCCC 1 cut(s) 532
PspPI GGNCC 3 cut(s) 68, 532, 533
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 5 cut(s) 25, 57, 153, 170, 247
RsaNI GTAC 5 cut(s) 24, 56, 152, 169, 246
RseI CAYNNNNRTG 3 cut(s) 561, 630, 669
SacI GAGCTC 1 cut(s) 702
SatI GCNGC 3 cut(s) 13, 100, 662
Sau3AI GATC 3 cut(s) 83, 181, 196
Sau96I GGNCC 3 cut(s) 68, 532, 533
SchI GAGTC 1 cut(s) 480
SduI GDGCHC 3 cut(s) 37, 536, 702
SfaNI GCATC 2 cut(s) 31, 634
SfcI CTRYAG 1 cut(s) 687
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 3 cut(s) 561, 630, 669
Sse9I AATT 4 cut(s) 425, 524, 615, 638
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 1 cut(s) 12
SstI GAGCTC 1 cut(s) 702
StuI AGGCCT 1 cut(s) 515
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 691
TaqI TCGA 1 cut(s) 217
TasI AATT 4 cut(s) 425, 524, 615, 638
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 281, 410
TscAI CASTG 2 cut(s) 555, 676
TseI GCWGC 2 cut(s) 99, 661
TspDTI ATGAA 5 cut(s) 101, 149, 308, 648, 734
TspRI CASTG 2 cut(s) 555, 676
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 2 cut(s) 425, 638
XceI RCATGY 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.