Rh3DG358100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000253
Physical Location & Seq
Forward (+)
43812107 .. 43812595
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG358100.1

Sequence Viewer

Length: 489 bp
ATGAAGGTGAACAATGAAGAGGACGGTGACAACAAGTTCCCAGTTGGAGAAGAATTTTACCCAGCCCTTCATAGAATGTTGAAGTGTAAGAAAGACTGGGGTGAAGACTTTTGTTTTTGTGGTCAGGCCATATTTGAGCATGGCATTCTAGAATGGACGGAAACCACCCTAACTGAATTTGAAGAGACATTAGACAAAGCCGGTATCCTTGGTGTAGTTGCTGTTTCCCGTTATCCGTATGAGTATTGCAGTAATGTGTGGATGGCATTCTGTGAGCTGTGGGGGCCTTTAACAAACACTTTTCACCATGCAGATGAGGAAATGAGCATCTCTTTGCATGATTTAAATGTTATTGGAGGATTGCCGGTTTCAGGAGAACCATACGAAGAATTTGTTCCTCCAAACAAAGATCTAGTGAAGGTTGAATTATATCCTTCTACGGTTGCAGGAGCTCTTGAGGGTTTACACCTATATGTGCGCTGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

162

Amino Acids

18.41

Weight (kDa)

4.53

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 68 - 127 1.8e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 487
AcsI RAATTY 3 cut(s) 53, 176, 389
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 82, 182, 425
AluBI AGCT 2 cut(s) 277, 452
AluI AGCT 2 cut(s) 277, 452
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 2 cut(s) 126, 284
ApeKI GCWGC 1 cut(s) 480
ApoI RAATTY 3 cut(s) 53, 176, 389
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 4 cut(s) 19, 38, 113, 296
BanII GRGCYC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 467
BccI CCATC 1 cut(s) 256
BciVI GTATCC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 149, 413
BfuI GTATCC 1 cut(s) 215
BglII AGATCT 1 cut(s) 409
BisI GCNGC 1 cut(s) 481
BlsI GCNGC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 285
BmrI ACTGGG 2 cut(s) 35, 106
BmsI GCATC 1 cut(s) 336
BmuI ACTGGG 2 cut(s) 35, 106
BpiI GAAGAC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 2 cut(s) 200, 364
Bse1I ACTGG 2 cut(s) 41, 101
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 371
BseNI ACTGG 2 cut(s) 41, 101
BseXI GCAGC 1 cut(s) 467
BseYI CCCAGC 1 cut(s) 61
BshFI GGCC 2 cut(s) 128, 286
BsiHKAI GWGCWC 1 cut(s) 454
BsiSI CCGG 2 cut(s) 201, 365
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 179
BsmI GAATGC 2 cut(s) 144, 266
BsnI GGCC 2 cut(s) 128, 286
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 1 cut(s) 409
BspANI GGCC 2 cut(s) 128, 286
BspLI GGNNCC 1 cut(s) 285
BsrFI RCCGGY 2 cut(s) 200, 364
BsrI ACTGG 2 cut(s) 41, 101
BssAI RCCGGY 2 cut(s) 200, 364
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 26, 442
Bst6I CTCTTC 2 cut(s) 12, 177
BstF5I GGATG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 467
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 2 cut(s) 128, 286
BtsCI GGATG 1 cut(s) 267
CfoI GCGC 1 cut(s) 480
Cfr10I RCCGGY 2 cut(s) 200, 364
Cfr13I GGNCC 1 cut(s) 284
CviAII CATG 3 cut(s) 140, 308, 338
CviJI RGCY 6 cut(s) 65, 128, 200, 277, 286, 452
CviKI_1 RGCY 6 cut(s) 65, 128, 200, 277, 286, 452
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
DraI TTTAAA 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 12, 177
EarI CTCTTC 2 cut(s) 12, 177
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 143, 311, 341
FatI CATG 3 cut(s) 139, 307, 337
Fnu4HI GCNGC 1 cut(s) 481
FokI GGATG 1 cut(s) 274
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 1 cut(s) 481
FspBI CTAG 2 cut(s) 149, 413
GlaI GCGC 1 cut(s) 479
GluI GCNGC 1 cut(s) 481
GsaI CCCAGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 128, 286
HapII CCGG 2 cut(s) 201, 365
HhaI GCGC 1 cut(s) 480
Hin1II CATG 3 cut(s) 143, 311, 341
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HpaII CCGG 2 cut(s) 201, 365
HphI GGTGA 4 cut(s) 19, 38, 113, 296
Hpy166II GTNNAC 2 cut(s) 10, 464
Hpy188III TCNNGA 3 cut(s) 149, 372, 455
Hpy8I GTNNAC 2 cut(s) 10, 464
HpyAV CCTTC 3 cut(s) 77, 412, 444
HpyCH4III ACNGT 2 cut(s) 26, 442
HpyCH4V TGCA 4 cut(s) 249, 311, 337, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
Hsp92II CATG 3 cut(s) 143, 311, 341
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 8 cut(s) 54, 75, 82, 110, 214, 357, 378, 432
Lsp1109I GCAGC 1 cut(s) 467
LweI GCATC 1 cut(s) 336
MaeI CTAG 2 cut(s) 149, 413
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 5 cut(s) 29, 62, 116, 194, 398
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 4 cut(s) 53, 176, 389, 425
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 5 cut(s) 13, 310, 350, 408, 451
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 290, 344
MslI CAYNNNNRTG 2 cut(s) 312, 471
MspI CCGG 2 cut(s) 201, 365
Mva1269I GAATGC 2 cut(s) 144, 266
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 409
NlaIII CATG 3 cut(s) 143, 311, 341
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 26
PctI GAATGC 2 cut(s) 144, 266
PdmI GAANNNNTTC 1 cut(s) 393
PkrI GCNGC 1 cut(s) 482
PsiI TTATAA 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 454
PspFI CCCAGC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 312, 471
SacI GAGCTC 1 cut(s) 454
SaqAI TTAA 2 cut(s) 290, 344
SatI GCNGC 1 cut(s) 481
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 454
SetI ASST 5 cut(s) 9, 279, 423, 454, 471
SfaNI GCATC 1 cut(s) 336
SmiI ATTTAAAT 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 312, 471
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 4 cut(s) 53, 176, 389, 425
SspMI CTAG 2 cut(s) 149, 413
SstI GAGCTC 1 cut(s) 454
StyI CCWWGG 1 cut(s) 208
SwaI ATTTAAAT 1 cut(s) 345
TaaI ACNGT 2 cut(s) 26, 442
TasI AATT 4 cut(s) 53, 176, 389, 425
Tru1I TTAA 2 cut(s) 290, 344
Tru9I TTAA 2 cut(s) 290, 344
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 480
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 17, 30, 59
TspGWI ACGGA 2 cut(s) 173, 225
XapI RAATTY 3 cut(s) 53, 176, 389
XbaI TCTAGA 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 149, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.