Rorug02G0247000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000253
Physical Location & Seq
Reverse (-)
25754423 .. 25754857
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0247000.1

Sequence Viewer

Length: 435 bp
ATGAGGGCCCATTTTTCAGACTTTGACCCTAAATTTAGACTTTTTTGGACAAAAAGTTCAAACTATCCCTACTTCTTTAGATTTTTTTTATTCTTTTTCTTTCTTCCTCTTCCATTTTCTATTCCCTTTCTTCCTACTCCGATTTCTTCTTCTTCTCACTTCCAAATTCTACCCCAGAACCCTAATCTCCAATCAAAATCCTATCTTTCCTCCCATTTCGCCACCAGTTACACCACTACCGCGCCGGAGAAAAGACCGGTCATACCTGAGAAGGTCTTGGCGATCTCGAGGCTTACTCTGCTCGAGGTCTCAGACCTGACGGAGGTCTTGAGAGATAAATTAGGGATAAAGCCGGCAATAATGATGGTGATGCTGGGGATGGGAATCGGCAGGCTCCTAGGCACCGATAAGGGTAGCGGTGTAGCATGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

9.85

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12_N PF16320 94 - 126 1.3e-07 Ribosomal protein L7/L12 dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccII CGCG 1 cut(s) 242
AciI CCGC 2 cut(s) 240, 417
AcsI RAATTY 2 cut(s) 32, 165
AfiI CCNNNNNNNGG 1 cut(s) 322
AgeI ACCGGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 60
AloI GAACNNNNNNTCC 2 cut(s) 40, 72
Alw26I GTCTC 1 cut(s) 313
Ama87I CYCGRG 2 cut(s) 286, 302
AoxI GGCC 1 cut(s) 6
ApaI GGGCCC 1 cut(s) 10
ApoI RAATTY 2 cut(s) 32, 165
AsiGI ACCGGT 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 397
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 6, 7
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 2 cut(s) 286, 302
AvrII CCTAGG 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 10
BccI CCATC 2 cut(s) 358, 373
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 398
BlnI CCTAGG 1 cut(s) 397
BmeT110I CYCGRG 2 cut(s) 286, 302
BmgT120I GGNCC 2 cut(s) 6, 7
BmiI GGNNCC 3 cut(s) 8, 395, 403
BmsI GCATC 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpuEI CTTGAG 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 2 cut(s) 256, 352
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 384
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 258, 324
BseNI ACTGG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 256
BsiHKCI CYCGRG 2 cut(s) 286, 302
BsiSI CCGG 3 cut(s) 245, 257, 353
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 313
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 313
BsoBI CYCGRG 2 cut(s) 286, 302
Bsp120I GGGCCC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 2 cut(s) 240, 417
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 259, 323
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 3 cut(s) 8, 395, 403
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 256, 352
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 2 cut(s) 256, 352
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 354, 392
BstDEI CTNAG 2 cut(s) 267, 310
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstPAI GACNNNNGTC 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 10
BstUI CGCG 1 cut(s) 242
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 354, 392
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 2 cut(s) 256, 352
Cfr13I GGNCC 2 cut(s) 6, 7
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 1 cut(s) 426
CviJI RGCY 4 cut(s) 8, 292, 352, 394
CviKI_1 RGCY 4 cut(s) 8, 292, 352, 394
DdeI CTNAG 2 cut(s) 267, 310
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 313
Eco88I CYCGRG 2 cut(s) 286, 302
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 397
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 1 cut(s) 429
FaiI YATR 2 cut(s) 263, 427
FatI CATG 1 cut(s) 425
FokI GGATG 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 10
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 377
HaeIII GGCC 1 cut(s) 8
HapII CCGG 3 cut(s) 245, 257, 353
HhaI GCGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 429
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 1 cut(s) 384
HpaII CCGG 3 cut(s) 245, 257, 353
HphI GGTGA 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 19, 141, 313
Hpy188III TCNNGA 2 cut(s) 286, 328
HpyAV CCTTC 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 267, 310
Hsp92II CATG 1 cut(s) 429
HspAI GCGC 1 cut(s) 242
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 9 cut(s) 188, 238, 258, 270, 279, 329, 359, 366, 376
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 6 cut(s) 95, 101, 122, 138, 141, 144
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 3 cut(s) 32, 165, 338
MnlI CCTC 5 cut(s) 117, 220, 282, 298, 316
MroNI GCCGGC 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 430
MspI CCGG 3 cut(s) 245, 257, 353
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 298
NaeI GCCGGC 1 cut(s) 354
NdeII GATC 1 cut(s) 282
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 429
NlaIV GGNNCC 3 cut(s) 8, 395, 403
PaeR7I CTCGAG 2 cut(s) 286, 302
PdiI GCCGGC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 384
PinAI ACCGGT 1 cut(s) 256
PshAI GACNNNNGTC 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 8, 395, 403
PspOMI GGGCCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 6, 7
PspXI VCTCGAGB 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 430
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 2 cut(s) 6, 7
SduI GDGCHC 1 cut(s) 10
SetI ASST 5 cut(s) 268, 276, 309, 318, 327
SfaNI GCATC 1 cut(s) 360
Sfr274I CTCGAG 2 cut(s) 286, 302
SlaI CTCGAG 2 cut(s) 286, 302
SmiMI CAYNNNNRTG 1 cut(s) 430
SmlI CTYRAG 3 cut(s) 286, 302, 328
SmoI CTYRAG 3 cut(s) 286, 302, 328
Sse9I AATT 3 cut(s) 32, 165, 338
SsiI CCGC 2 cut(s) 240, 417
SspMI CTAG 1 cut(s) 398
StyI CCWWGG 1 cut(s) 397
TaqI TCGA 2 cut(s) 287, 303
TasI AATT 3 cut(s) 32, 165, 338
TfiI GAWTC 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 335
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 2 cut(s) 32, 165
XhoI CTCGAG 2 cut(s) 286, 302
XmaJI CCTAGG 1 cut(s) 397
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.