Rh5BG244700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000253
Physical Location & Seq
Reverse (-)
29618179 .. 29618520
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG244700.1

Sequence Viewer

Length: 342 bp
ATGGATGCACATGGACATATATGTACTGAACGAGCACTTAACAAGCGCGGGCAGGAAGCCATAGAGGGTCCAGAGTATAGGCGGTCTTCACCATTGCGTTCCGTACAAGTTGATGCCTCAGTGAAAGACAAAATGACATGGGTCAGCGAAGTGCGAGTGCATTCTGGGTATCTCACATTCAGTCATGATTCTGAAGATCAAGCCATAAAGACTTGCCGCTCCTACTGTGCTGTATTTCCAGCTCACACCCTTGAGAAAGTTAATAATGAAGAGGATGGGGATTCCTTCATTCACCAAGAGAACTTTTATCCTGTTCTTTATAAAATGTTGAAAGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.01

Weight (kDa)

6.05

Isoelectric Point (pI)

70.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 48, 82, 217
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 25, 105
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 81, 284
AvaII GGWCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 1 cut(s) 269
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 92
BseGI GGATG 2 cut(s) 10, 280
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 3 cut(s) 48, 82, 217
BspCNI CTCAG 1 cut(s) 131
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 92
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 10, 280
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstPAI GACNNNNGTC 1 cut(s) 140
BstUI CGCG 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 10, 280
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 24, 104
CviAII CATG 3 cut(s) 11, 138, 185
CviJI RGCY 3 cut(s) 59, 203, 242
CviKI_1 RGCY 3 cut(s) 59, 203, 242
CviQI GTAC 2 cut(s) 24, 104
DdeI CTNAG 1 cut(s) 118
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 213
FaeI CATG 3 cut(s) 14, 141, 188
FatI CATG 3 cut(s) 10, 137, 184
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 2 cut(s) 17, 287
Fsp4HI GCNGC 1 cut(s) 217
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 48
Hin1II CATG 3 cut(s) 14, 141, 188
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 2 cut(s) 188, 281
HphI GGTGA 2 cut(s) 81, 284
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 71, 185
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 8, 160
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 3 cut(s) 14, 141, 188
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 5 cut(s) 38, 84, 150, 252, 324
LweI GCATC 1 cut(s) 103
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 219
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 78, 206, 281
MhlI GDGCHC 1 cut(s) 37
MnlI CCTC 3 cut(s) 58, 127, 265
MseI TTAA 2 cut(s) 39, 261
Mva1269I GAATGC 1 cut(s) 160
MvnI CGCG 1 cut(s) 48
NdeII GATC 1 cut(s) 196
NlaIII CATG 3 cut(s) 14, 141, 188
NlaIV GGNNCC 1 cut(s) 69
PagI TCATGA 1 cut(s) 184
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 2 cut(s) 188, 281
PkrI GCNGC 1 cut(s) 218
PshAI GACNNNNGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 68
RsaI GTAC 2 cut(s) 25, 105
RsaNI GTAC 2 cut(s) 24, 104
SaqAI TTAA 2 cut(s) 39, 261
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 37
SetI ASST 1 cut(s) 244
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SsiI CCGC 3 cut(s) 48, 82, 217
TaaI ACNGT 1 cut(s) 227
TatI WGTACW 1 cut(s) 23
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 2 cut(s) 188, 281
Tru1I TTAA 2 cut(s) 39, 261
Tru9I TTAA 2 cut(s) 39, 261
TscAI CASTG 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 277, 282
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.