Rh2BG330900

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000253
Physical Location & Seq
Forward (+)
43508598 .. 43533866
25269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG330900.1

Sequence Viewer

Length: 678 bp
ATGTTGCTAGCTGTAGGCTTCTGGCTTCAACACGTCCATGTGCTTAGAGAATGCTTATTGGTGGCCTTCTCATTCTGGGTGTCCCATATGAAACTCATTCCTGCAAATAAAGAATTACATCGTAATGGGAAGTATACCATTGTTGAACTTCTGCGAATACATTCTGAATTGAGTGCACCCAATAGGAAGACTTATGTTTCCTGGAGGCAATGGCTTGCTCATTTTTATCGGGGACGCTTGGTATACGCAGCCTATGGAGAGACTACATACCGGGGAGATCAAATGCAACAACATACGTTTATGGGTAGGAAACCAACTCTGGACATTTCAAAAGAAGGAGAACTTGCTGCTTTTCTGTCATTTTGGCTCAGCGGGTTTGTTTTGCCTTCTCATGACCGCAGAATTAGACCTGAAACGTTTCATATGGCAGGCTTAATGGCCCAGGGGGTCAAGGTCTCTCTTTCACCATCAGTTTTAGGCTATATTTATCATGGCCTTGGTGAGTTTGTGACTGATCTGAGAGGGCCTAAAGAGTCTCAAGGTTGTCTGCCTGTTCATTACGTAATTGGTTGGTTAGGAGAGAACTTTACTTGTTTGTATAGAAGCCGAGCTGCAGGTGACATACCTGCTCGTCACCCTCATTTGGCCAGCTATGCATGTGCTGATACTGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

225

Amino Acids

25.73

Weight (kDa)

9.19

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 61 - 201 4.4e-11 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 605
Acc36I ACCTGC 2 cut(s) 605, 634
AccI GTMKAC 2 cut(s) 134, 243
AciI CCGC 2 cut(s) 372, 397
AclI AACGTT 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 645
AfiI CCNNNNNNNGG 1 cut(s) 643
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 3 cut(s) 29, 146, 330
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 200, 441
AluBI AGCT 3 cut(s) 11, 611, 651
AluI AGCT 3 cut(s) 11, 611, 651
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 3 cut(s) 254, 460, 540
Alw44I GTGCAC 1 cut(s) 174
AoxI GGCC 5 cut(s) 63, 438, 493, 524, 645
ApaLI GTGCAC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 248, 347, 611
Asp700I GAANNNNTTC 2 cut(s) 160, 417
AspS9I GGNCC 2 cut(s) 439, 524
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 4 cut(s) 456, 512, 626, 629
AsuNHI GCTAGC 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 178
BalI TGGCCA 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 260, 334, 598
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 2 cut(s) 202, 443
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 3 cut(s) 254, 460, 540
BfaI CTAG 2 cut(s) 8, 676
BfmI CTRYAG 2 cut(s) 12, 612
BfuAI ACCTGC 2 cut(s) 605, 634
BisI GCNGC 3 cut(s) 249, 348, 612
BlpI GCTNAGC 1 cut(s) 368
BlsI GCNGC 3 cut(s) 250, 349, 613
Bme1390I CCNGG 3 cut(s) 202, 272, 443
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 439, 524
BmrFI CCNGG 3 cut(s) 202, 272, 443
BmtI GCTAGC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 223
Bpu1102I GCTNAGC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 4 cut(s) 271, 441, 442, 496
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 215
BseBI CCWGG 2 cut(s) 202, 443
BseDI CCNNGG 4 cut(s) 271, 441, 442, 496
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 3 cut(s) 382, 509, 660
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 3 cut(s) 260, 334, 598
BshFI GGCC 5 cut(s) 65, 440, 495, 526, 647
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 2 cut(s) 67, 246
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 3 cut(s) 254, 460, 540
BsmFI GGGAC 2 cut(s) 67, 246
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 5 cut(s) 65, 440, 495, 526, 647
Bso31I GGTCTC 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 277, 514
Bsp1720I GCTNAGC 1 cut(s) 368
BspACI CCGC 2 cut(s) 372, 397
BspANI GGCC 5 cut(s) 65, 440, 495, 526, 647
BspCNI CTCAG 3 cut(s) 381, 510, 661
BspHI TCATGA 1 cut(s) 391
BspMAI CTGCAG 1 cut(s) 616
BspMI ACCTGC 2 cut(s) 605, 634
BspOI GCTAGC 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 215
BssECI CCNNGG 4 cut(s) 271, 441, 442, 496
BssMI GATC 2 cut(s) 277, 514
BssNAI GTATAC 2 cut(s) 135, 244
BssT1I CCWWGG 1 cut(s) 496
Bst1107I GTATAC 2 cut(s) 135, 244
Bst2UI CCWGG 2 cut(s) 202, 443
BstBAI YACGTR 1 cut(s) 562
BstC8I GCNNGC 4 cut(s) 9, 216, 430, 649
BstDEI CTNAG 4 cut(s) 44, 368, 518, 669
BstKTI GATC 2 cut(s) 280, 517
BstMAI GTCTC 3 cut(s) 254, 460, 540
BstMBI GATC 2 cut(s) 277, 514
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstNI CCWGG 2 cut(s) 202, 443
BstNSI RCATGY 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 200, 270, 441
BstSFI CTRYAG 2 cut(s) 12, 612
BstSLI GKGCMC 1 cut(s) 178
BstSNI TACGTA 1 cut(s) 562
BstV1I GCAGC 3 cut(s) 260, 334, 598
BstV2I GAAGAC 1 cut(s) 194
BstZ17I GTATAC 2 cut(s) 135, 244
BsuRI GGCC 5 cut(s) 65, 440, 495, 526, 647
BtrI CACGTC 1 cut(s) 34
BveI ACCTGC 2 cut(s) 605, 634
Cac8I GCNNGC 4 cut(s) 9, 216, 430, 649
CciI TCATGA 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 439, 524
CseI GACGC 1 cut(s) 243
CviAII CATG 4 cut(s) 38, 392, 491, 657
DdeI CTNAG 4 cut(s) 44, 368, 518, 669
DpnI GATC 2 cut(s) 279, 516
DpnII GATC 2 cut(s) 277, 514
EaeI YGGCCR 1 cut(s) 645
Eco105I TACGTA 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 496
Eco31I GGTCTC 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 200, 441
EcoT14I CCWWGG 1 cut(s) 496
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 4 cut(s) 41, 395, 494, 660
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 2 cut(s) 67, 246
FatI CATG 4 cut(s) 37, 391, 490, 656
FauI CCCGC 1 cut(s) 365
FauNDI CATATG 2 cut(s) 87, 423
FblI GTMKAC 2 cut(s) 134, 243
Fnu4HI GCNGC 3 cut(s) 249, 348, 612
Fsp4HI GCNGC 3 cut(s) 249, 348, 612
FspBI CTAG 2 cut(s) 8, 676
GluI GCNGC 3 cut(s) 249, 348, 612
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 5 cut(s) 65, 440, 495, 526, 647
HapII CCGG 1 cut(s) 271
HgaI GACGC 1 cut(s) 243
Hin1II CATG 4 cut(s) 41, 395, 494, 660
HinfI GANTC 1 cut(s) 533
HpaII CCGG 1 cut(s) 271
HphI GGTGA 4 cut(s) 456, 512, 626, 629
Hpy166II GTNNAC 3 cut(s) 135, 176, 244
Hpy188I TCNGA 2 cut(s) 166, 519
Hpy188III TCNNGA 2 cut(s) 320, 392
Hpy8I GTNNAC 3 cut(s) 135, 176, 244
HpyAV CCTTC 3 cut(s) 76, 329, 396
HpyCH4IV ACGT 4 cut(s) 33, 296, 416, 561
HpyCH4V TGCA 5 cut(s) 104, 176, 286, 614, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 4 cut(s) 44, 368, 518, 669
HpySE526I ACGT 4 cut(s) 33, 296, 416, 561
Hsp92II CATG 4 cut(s) 41, 395, 494, 660
Kzo9I GATC 2 cut(s) 277, 514
Lsp1109I GCAGC 3 cut(s) 260, 334, 598
MaeI CTAG 2 cut(s) 8, 676
MaeII ACGT 4 cut(s) 33, 296, 416, 561
MaeIII GTNAC 3 cut(s) 508, 617, 632
MalI GATC 2 cut(s) 279, 516
MboI GATC 2 cut(s) 277, 514
MboII GAAGA 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 4 cut(s) 113, 167, 402, 564
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 3 cut(s) 198, 515, 648
Mox20I TGGCCA 1 cut(s) 647
Mph1103I ATGCAT 1 cut(s) 658
MroXI GAANNNNTTC 2 cut(s) 160, 417
MscI TGGCCA 1 cut(s) 647
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 2 cut(s) 36, 123
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 3 cut(s) 202, 272, 443
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 2 cut(s) 202, 443
MwoI GCNNNNNNNGC 1 cut(s) 653
NciI CCSGG 1 cut(s) 272
NdeI CATATG 2 cut(s) 87, 423
NdeII GATC 2 cut(s) 277, 514
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 4 cut(s) 41, 395, 494, 660
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 3 cut(s) 508, 617, 632
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 660
PagI TCATGA 1 cut(s) 391
PaqCI CACCTGC 1 cut(s) 605
PasI CCCWGGG 1 cut(s) 442
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 160, 417
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 3 cut(s) 250, 349, 613
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Ppu21I YACGTR 1 cut(s) 562
Psp1406I AACGTT 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 200, 441
PspGI CCWGG 2 cut(s) 200, 441
PspPI GGNCC 2 cut(s) 439, 524
PstI CTGCAG 1 cut(s) 616
RseI CAYNNNNRTG 2 cut(s) 36, 123
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 3 cut(s) 249, 348, 612
Sau3AI GATC 2 cut(s) 277, 514
Sau96I GGNCC 2 cut(s) 439, 524
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 3 cut(s) 202, 272, 443
SduI GDGCHC 1 cut(s) 178
SfcI CTRYAG 2 cut(s) 12, 612
SmiMI CAYNNNNRTG 2 cut(s) 36, 123
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
SnaBI TACGTA 1 cut(s) 562
Sse9I AATT 4 cut(s) 113, 167, 402, 564
SsiI CCGC 2 cut(s) 372, 397
SspMI CTAG 2 cut(s) 8, 676
StyD4I CCNGG 3 cut(s) 200, 270, 441
StyI CCWWGG 1 cut(s) 496
TaiI ACGT 4 cut(s) 36, 299, 419, 564
TasI AATT 4 cut(s) 113, 167, 402, 564
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TseFI GTSAC 3 cut(s) 508, 617, 632
TseI GCWGC 3 cut(s) 248, 347, 611
Tsp45I GTSAC 3 cut(s) 508, 617, 632
TspDTI ATGAA 3 cut(s) 104, 410, 545
VneI GTGCAC 1 cut(s) 174
XceI RCATGY 1 cut(s) 660
XmiI GTMKAC 2 cut(s) 134, 243
XmnI GAANNNNTTC 2 cut(s) 160, 417
XspI CTAG 2 cut(s) 8, 676
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.