Rh4BG129700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000253
Physical Location & Seq
Forward (+)
21891674 .. 21895575
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG129700.1

Sequence Viewer

Length: 546 bp
ATGGAGTCTTTCCCCTTTTTTGGTGAGATAAGGAGTCTTTTTAGGATTGCGCAACTGGTGTGGCAATTGGACGAACGACTGCGAGCCCCAAAGAAGCAAGGGAAGGATCTTGACTACAGTCCTGAATACCGAAGATCGTTACCTTTGAACTTAATTAGTCTCACGGTGTCCGTTGAGAGTAGGCCTACTTGGGTTACCACTGCCAACTTGAATTCTAGCCACCTTAGATTAGATCCTCATGCCGAAGAGGGTGTTATAAAGAATGTTCGCTATTTCGGTGCTCGTTTTGATGCTCACACGTTAATGAAGGCGAACAATGAAGAGGACGGTGACAGCAAGTTCCTAGTTGGAGAAGACTTTTACCCTGCCCTTCATAAAATGCTGAAATGTAAGAAAGACTGGGGTGAAGAATTCTGTTTTCGAGGTCGGGCCGTATTTGAGCATGGCATTTTAGAATGGACGAAAACCACCTTAACTGACTTTGAAGACACATTAGACAAAGCCATCTTTGGTGCAGTTGCTGTTTCTCGTTATCCATATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

21.01

Weight (kDa)

5.99

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
Acc16I TGCGCA 1 cut(s) 51
AclWI GGATC 2 cut(s) 114, 227
AcsI RAATTY 2 cut(s) 211, 410
AfiI CCNNNNNNNGG 1 cut(s) 20
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 148, 211, 485
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 114, 227
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 2 cut(s) 182, 429
ApoI RAATTY 2 cut(s) 211, 410
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 429
AsuHPI GGTGA 3 cut(s) 35, 341, 416
BanII GRGCYC 1 cut(s) 88
BbsI GAAGAC 2 cut(s) 360, 492
Bbv12I GWGCWC 1 cut(s) 283
BccI CCATC 1 cut(s) 512
BceAI ACGGC 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 2 cut(s) 216, 344
BfmI CTRYAG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 429
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 409
BoxI GACNNNNGTC 1 cut(s) 117
BpiI GAAGAC 2 cut(s) 360, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 60, 404
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 60, 404
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 2 cut(s) 184, 431
BsiHKAI GWGCWC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 2 cut(s) 184, 431
Bsp1286I GDGCHC 2 cut(s) 88, 283
Bsp143I GATC 3 cut(s) 106, 134, 232
BspANI GGCC 2 cut(s) 184, 431
BspPI GGATC 2 cut(s) 114, 227
BsrI ACTGG 2 cut(s) 60, 404
BssMI GATC 3 cut(s) 106, 134, 232
Bst4CI ACNGT 3 cut(s) 119, 166, 329
Bst6I CTCTTC 2 cut(s) 240, 315
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 224
BstEII GGTNACC 1 cut(s) 193
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 3 cut(s) 109, 137, 235
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 106, 134, 232
BstPAI GACNNNNGTC 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 115
BstV2I GAAGAC 2 cut(s) 360, 492
BstX2I RGATCY 2 cut(s) 106, 232
BstYI RGATCY 2 cut(s) 106, 232
BsuRI GGCC 2 cut(s) 184, 431
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 429
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 2 cut(s) 239, 443
CviJI RGCY 5 cut(s) 86, 184, 219, 431, 503
CviKI_1 RGCY 5 cut(s) 86, 184, 219, 431, 503
DdeI CTNAG 1 cut(s) 224
DpnI GATC 3 cut(s) 108, 136, 234
DpnII GATC 3 cut(s) 106, 134, 232
Eam1104I CTCTTC 2 cut(s) 240, 315
EarI CTCTTC 2 cut(s) 240, 315
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 211, 410
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 2 cut(s) 242, 446
FaiI YATR 6 cut(s) 240, 257, 375, 444, 538, 540
FatI CATG 2 cut(s) 238, 442
FauNDI CATATG 1 cut(s) 538
FriOI GRGCYC 1 cut(s) 88
FspBI CTAG 2 cut(s) 216, 344
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 184, 431
HhaI GCGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 242, 446
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 2 cut(s) 5, 34
HphI GGTGA 3 cut(s) 35, 341, 416
Hpy188III TCNNGA 2 cut(s) 110, 122
HpyAV CCTTC 3 cut(s) 97, 301, 380
HpyCH4III ACNGT 3 cut(s) 119, 166, 329
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 1 cut(s) 515
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 2 cut(s) 242, 446
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 3 cut(s) 106, 134, 232
LpnPI CCDG 4 cut(s) 41, 135, 378, 385
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 216, 344
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 3 cut(s) 138, 193, 329
MalI GATC 3 cut(s) 108, 136, 234
MboI GATC 3 cut(s) 106, 134, 232
MboII GAAGA 6 cut(s) 144, 257, 332, 365, 419, 497
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 2 cut(s) 106, 232
MhlI GDGCHC 2 cut(s) 88, 283
MluCI AATT 4 cut(s) 65, 153, 211, 410
MlyI GAGTC 2 cut(s) 14, 43
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 241, 246, 316, 416
MseI TTAA 3 cut(s) 152, 302, 473
MslI CAYNNNNRTG 1 cut(s) 302
MunI CAATTG 1 cut(s) 65
NdeI CATATG 1 cut(s) 538
NdeII GATC 3 cut(s) 106, 134, 232
NlaIII CATG 2 cut(s) 242, 446
NmuCI GTSAC 1 cut(s) 329
NsbI TGCGCA 1 cut(s) 51
PceI AGGCCT 1 cut(s) 184
PleI GAGTC 2 cut(s) 13, 42
PpsI GAGTC 2 cut(s) 13, 42
PshAI GACNNNNGTC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 257
PspEI GGTNACC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 429
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 2 cut(s) 106, 232
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 3 cut(s) 152, 302, 473
Sau3AI GATC 3 cut(s) 106, 134, 232
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 2 cut(s) 14, 43
SduI GDGCHC 2 cut(s) 88, 283
SetI ASST 5 cut(s) 145, 225, 302, 427, 473
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 4 cut(s) 65, 153, 211, 410
SseBI AGGCCT 1 cut(s) 184
SspMI CTAG 2 cut(s) 216, 344
StuI AGGCCT 1 cut(s) 184
TaaI ACNGT 3 cut(s) 119, 166, 329
TaiI ACGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 421
TasI AATT 4 cut(s) 65, 153, 211, 410
Tru1I TTAA 3 cut(s) 152, 302, 473
Tru9I TTAA 3 cut(s) 152, 302, 473
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 320, 333, 362
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 205
XapI RAATTY 2 cut(s) 211, 410
XspI CTAG 2 cut(s) 216, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.