RLG00000023327

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000253
Physical Location & Seq
Forward (+)
21995071 .. 21996436
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023327

Sequence Viewer

Length: 1068 bp
ATGCATTTCCCTGACACCTTTTTTAACAGGTTTGTCTTACCCGCATGGGATAAAACAATAAGGCCAGAGACATTTCATATGGCATGTCTGATGGCAAAGGGAGTTAAAGTTTCCATTGCACCGACAACATTAGGGTATATTTATCACCGTCTTGGAGAAGTTGCTTCTCATCCGGTAGGGGACACCCCCCCAAAAGTGTGCTTACCCATACATTATGTACTTGGCTGGCTCGGGGAGTATTTTCCGCAGTTGTGTAAACGACGAGCGGATAGTGAGTTTCCAGCAGATTATCCGCGTCTAGCGAGGTATGCTTATGTTGTAAGCAAAGATTTGTCCATTACTTGCGCCAGAATGGTCTTTCGGGATAACAAGTCTGTAATCTATCGTCCCCACGCTTTTCTCGAAACTGAGGGCTGTTTTCTGTTAGACGATGGGACTCTGTCAGATGAGAGATTTGAGTTTCTTTTTGGCCTACGCTCTGCATGCCTTCCTGTGAGAGTAGCTGGTCAGCTAATTTTAGAGCCGTATTATCCCAACAGATTTGCACGTCAATTCGGCTATGATCAGAGTGTTCCCTCTAACCGCCTCTCTTTTAGTGTGTCAAAGAGGAAGCAGTGTTTTGTTGAGGACTTAGCGAGAGCCCAGACTATTCTTTACAGGAGGAATACAACAGCTCGTTTTTATATTCCGAGATCGACACGTGAAGGAGAATGCACTTGGTGGTACTGCAAGTGGTGGTTGAAAGCTTGTATACCTTATCTAGGGCTTTCAGTATCGAAGACTTTCAAGACTTTCACTAAGAAATCTCCTGAGCCCGATCATCGTGTCTTTATAGTGAACAAACTTGCTGAAGTTTCTGCGGATTTGAGAAAAGAAGTTCAGATTTCATCTTTACCGAGGCCAGAGAGTCAGAATTCTCAAACGAGCCTTAGCAAGGTTGGGCCAGATGGTGATAACCATATCAGTAGGAAGCGTATTAACCATGAGAAGGTGGCGACCCTTGAAGGGACAGTATCCAGAGAGCTGAGCCTTCCCAAGACAGGATCTGGCACTCAAGAGGAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

356

Amino Acids

40.74

Weight (kDa)

9.26

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 10 - 246 2.5e-21 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 751
AccII CGCG 1 cut(s) 295
AciI CCGC 6 cut(s) 42, 245, 266, 293, 583, 860
AclWI GGATC 1 cut(s) 1051
AcsI RAATTY 1 cut(s) 913
AcuI CTGAAG 1 cut(s) 870
AcvI CACGTG 1 cut(s) 701
AdeI CACNNNGTG 1 cut(s) 720
AfaI GTAC 2 cut(s) 219, 725
AfiI CCNNNNNNNGG 5 cut(s) 761, 934, 988, 1005, 1040
AflIII ACRYGT 1 cut(s) 698
AgsI TTSAA 3 cut(s) 742, 787, 1004
AjiI CACGTC 1 cut(s) 548
AluBI AGCT 5 cut(s) 503, 511, 674, 746, 1024
AluI AGCT 5 cut(s) 503, 511, 674, 746, 1024
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 1051
AlwNI CAGNNNCTG 1 cut(s) 1046
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 4 cut(s) 62, 469, 899, 941
ApoI RAATTY 1 cut(s) 913
Asp700I GAANNNNTTC 1 cut(s) 782
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 941
AsuHPI GGTGA 2 cut(s) 137, 962
AvaI CYCGRG 1 cut(s) 230
BanII GRGCYC 2 cut(s) 643, 816
BbrPI CACGTG 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 785
BccI CCATC 3 cut(s) 85, 425, 941
BceAI ACGGC 1 cut(s) 508
BciVI GTATCC 1 cut(s) 1024
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 2 cut(s) 299, 761
BfuI GTATCC 1 cut(s) 1024
BlpI GCTNAGC 1 cut(s) 1025
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 785
Bpu10I CCTNAGC 2 cut(s) 810, 929
Bpu1102I GCTNAGC 1 cut(s) 1025
BpuEI CTTGAG 1 cut(s) 1038
BsaAI YACGTR 1 cut(s) 701
BsaJI CCNNGG 1 cut(s) 896
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 5 cut(s) 761, 934, 988, 1005, 1040
Bse3DI GCAATG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 896
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 5 cut(s) 761, 934, 988, 1005, 1040
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 399, 801, 1016
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 64, 471, 901, 943
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 4 cut(s) 194, 372, 448, 1021
BslI CCNNNNNNNGG 5 cut(s) 761, 934, 988, 1005, 1040
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 4 cut(s) 194, 372, 448, 1021
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 4 cut(s) 64, 471, 901, 943
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 643, 816
Bsp143I GATC 4 cut(s) 562, 692, 817, 1043
Bsp1720I GCTNAGC 1 cut(s) 1025
BspACI CCGC 6 cut(s) 42, 245, 266, 293, 583, 860
BspANI GGCC 4 cut(s) 64, 471, 901, 943
BspCNI CTCAG 3 cut(s) 400, 802, 1017
BspFNI CGCG 1 cut(s) 295
BspPI GGATC 1 cut(s) 1051
BsrBI CCGCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 896
BssMI GATC 4 cut(s) 562, 692, 817, 1043
BssNAI GTATAC 1 cut(s) 752
Bst1107I GTATAC 1 cut(s) 752
Bst4CI ACNGT 2 cut(s) 149, 1012
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 227, 484
BstDEI CTNAG 6 cut(s) 408, 631, 798, 810, 929, 1025
BstENI CCTNNNNNAGG 2 cut(s) 759, 932
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 4 cut(s) 565, 695, 820, 1046
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 4 cut(s) 562, 692, 817, 1043
BstMWI GCNNNNNNNGC 2 cut(s) 308, 483
BstNSI RCATGY 2 cut(s) 87, 486
BstUI CGCG 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 785
BstX2I RGATCY 1 cut(s) 1043
BstYI RGATCY 1 cut(s) 1043
BstZ17I GTATAC 1 cut(s) 752
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 4 cut(s) 64, 471, 901, 943
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 2 cut(s) 227, 484
CaiI CAGNNNCTG 1 cut(s) 1046
CfoI GCGC 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 941
CseI GACGC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 218, 724
CviAII CATG 4 cut(s) 45, 84, 483, 983
CviQI GTAC 2 cut(s) 218, 724
DdeI CTNAG 6 cut(s) 408, 631, 798, 810, 929, 1025
DpnI GATC 4 cut(s) 564, 694, 819, 1045
DpnII GATC 4 cut(s) 562, 692, 817, 1043
DraIII CACNNNGTG 1 cut(s) 720
Eco24I GRGCYC 2 cut(s) 643, 816
Eco57I CTGAAG 1 cut(s) 870
Eco72I CACGTG 1 cut(s) 701
Eco88I CYCGRG 1 cut(s) 230
EcoNI CCTNNNNNAGG 2 cut(s) 759, 932
EcoRI GAATTC 1 cut(s) 913
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 643, 816
FaeI CATG 4 cut(s) 48, 87, 486, 986
FaqI GGGAC 4 cut(s) 194, 372, 448, 1021
FatI CATG 4 cut(s) 44, 83, 482, 982
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 1 cut(s) 78
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 751
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 2 cut(s) 643, 816
FspBI CTAG 2 cut(s) 299, 761
GlaI GCGC 1 cut(s) 346
HaeIII GGCC 4 cut(s) 64, 471, 901, 943
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 347
Hin1II CATG 4 cut(s) 48, 87, 486, 986
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 2 cut(s) 436, 907
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 137, 962
Hpy166II GTNNAC 3 cut(s) 257, 752, 838
Hpy188I TCNGA 6 cut(s) 90, 445, 567, 690, 882, 912
Hpy188III TCNNGA 6 cut(s) 362, 401, 787, 809, 1017, 1055
Hpy8I GTNNAC 3 cut(s) 257, 752, 838
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 5 cut(s) 497, 698, 982, 998, 1040
HpyCH4III ACNGT 2 cut(s) 149, 1012
HpyCH4IV ACGT 2 cut(s) 547, 700
HpyCH4V TGCA 6 cut(s) 4, 119, 482, 545, 714, 729
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 483
HpyF3I CTNAG 6 cut(s) 408, 631, 798, 810, 929, 1025
HpySE526I ACGT 2 cut(s) 547, 700
Hsp92II CATG 4 cut(s) 48, 87, 486, 986
HspAI GCGC 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 562, 692, 817, 1043
MaeI CTAG 2 cut(s) 299, 761
MaeII ACGT 2 cut(s) 547, 700
MalI GATC 4 cut(s) 564, 694, 819, 1045
MbiI CCGCTC 1 cut(s) 266
MboI GATC 4 cut(s) 562, 692, 817, 1043
MboII GAAGA 1 cut(s) 790
MflI RGATCY 1 cut(s) 1043
MhlI GDGCHC 2 cut(s) 643, 816
MluCI AATT 3 cut(s) 513, 551, 913
MlyI GAGTC 2 cut(s) 430, 916
MnlI CCTC 9 cut(s) 297, 403, 586, 596, 600, 619, 654, 891, 1051
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 782
MseI TTAA 3 cut(s) 24, 105, 978
MspI CCGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 716
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 308, 483
NdeI CATATG 1 cut(s) 78
NdeII GATC 4 cut(s) 562, 692, 817, 1043
NlaIII CATG 4 cut(s) 48, 87, 486, 986
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 87, 486
PaeI GCATGC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PctI GAATGC 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 782
PflFI GACNNNGTC 1 cut(s) 439
PleI GAGTC 2 cut(s) 430, 915
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 2 cut(s) 430, 915
Ppu21I YACGTR 1 cut(s) 701
PspCI CACGTG 1 cut(s) 701
PspPI GGNCC 1 cut(s) 941
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 1 cut(s) 1043
PsyI GACNNNGTC 1 cut(s) 439
RsaI GTAC 2 cut(s) 219, 725
RsaNI GTAC 2 cut(s) 218, 724
SaqAI TTAA 3 cut(s) 24, 105, 978
Sau3AI GATC 4 cut(s) 562, 692, 817, 1043
Sau96I GGNCC 1 cut(s) 941
SchI GAGTC 2 cut(s) 430, 916
SduI GDGCHC 2 cut(s) 643, 816
SmlI CTYRAG 1 cut(s) 1053
SmoI CTYRAG 1 cut(s) 1053
SphI GCATGC 1 cut(s) 486
Sse9I AATT 3 cut(s) 513, 551, 913
SsiI CCGC 6 cut(s) 42, 245, 266, 293, 583, 860
SspMI CTAG 2 cut(s) 299, 761
TaaI ACNGT 2 cut(s) 149, 1012
TaiI ACGT 2 cut(s) 550, 703
TaqI TCGA 3 cut(s) 402, 695, 776
TasI AATT 3 cut(s) 513, 551, 913
TatI WGTACW 1 cut(s) 217
Tru1I TTAA 3 cut(s) 24, 105, 978
Tru9I TTAA 3 cut(s) 24, 105, 978
TscAI CASTG 1 cut(s) 620
TspDTI ATGAA 2 cut(s) 65, 876
TspRI CASTG 1 cut(s) 620
Tth111I GACNNNGTC 1 cut(s) 439
XagI CCTNNNNNAGG 2 cut(s) 759, 932
XapI RAATTY 1 cut(s) 913
XceI RCATGY 2 cut(s) 87, 486
XmiI GTMKAC 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 782
XspI CTAG 2 cut(s) 299, 761
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.