Rmu_co8303105.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8303105.1
OG0000253
Physical Location & Seq
Forward (+)
1 .. 900
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8303105.1_g000001.1.cds

Sequence Viewer

Length: 720 bp
gtcatggatgcaaacggccacatttgtaccgaaagagcccttgacgcccatggaaaggttcttgaacaaggtccagaatatcacagatcctcattcctgagcagcatacctattcatccaactcctaaagacagagttacttgggtgactgaggcacaagttcattcagggtaccttacttttgatcagagttctgaggatcaagtaataagaacttgtcgaactcatggtgcattatttcaagctcgtacattggaaaaggtcagcaatgatgaggaaggtgattcctttactcctcaggaagatttctatcctgttcttcataacatgcttagaaacaaagaggactggaaacacactccttatttccgaggagtagcaacctttgagcttggcactatggaatggaccgattctataatgagaaaatttggaggtattttggagaaagcaggaatacttggtgctgttggagtctcttgtttcccctaccactattctacaaatacatggaaggccttttgtgaattatggggcccactaaccaatacactgcaccatgggaatggggaaatgggcatttctctgtatgatatgagagtgattggaggtttaccaattttggggcatccgtatgaagaatttatccctgtcaacagtgaactacattgtagtgagcgctatccatctacagttgctgagctcttgcgcattcactcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

240

Amino Acids

27.18

Weight (kDa)

5.65

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 710
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AclWI GGATC 2 cut(s) 81, 207
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 2 cut(s) 428, 641
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 3 cut(s) 28, 173, 250
AfeI AGCGCT 1 cut(s) 680
AfiI CCNNNNNNNGG 2 cut(s) 55, 623
AgsI TTSAA 2 cut(s) 65, 242
AluBI AGCT 3 cut(s) 245, 391, 703
AluI AGCT 3 cut(s) 245, 391, 703
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 2 cut(s) 81, 207
AlwNI CAGNNNCTG 1 cut(s) 698
Aor51HI AGCGCT 1 cut(s) 680
AoxI GGCC 3 cut(s) 16, 516, 535
ApaI GGGCCC 1 cut(s) 539
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 428, 641
Asp718I GGTACC 1 cut(s) 171
AspLEI GCGC 2 cut(s) 681, 711
AspS9I GGNCC 4 cut(s) 71, 408, 535, 536
AsuHPI GGTGA 2 cut(s) 157, 293
AvaII GGWCC 2 cut(s) 71, 408
AxyI CCTNAGG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 10, 43
BanI GGYRCC 1 cut(s) 171
BanII GRGCYC 3 cut(s) 40, 539, 705
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 694
BceAI ACGGC 1 cut(s) 31
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 481
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 682
BisI GCNGC 1 cut(s) 103
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 1 cut(s) 104
Bme18I GGWCC 2 cut(s) 71, 408
BmgT120I GGNCC 4 cut(s) 71, 408, 535, 536
BmiI GGNNCC 3 cut(s) 173, 536, 537
BmsI GCATC 1 cut(s) 637
Bpu10I CCTNAGC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 699
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 49, 370, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 623
Bse1I ACTGG 1 cut(s) 353
Bse21I CCTNAGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 49, 370, 559
BseGI GGATG 3 cut(s) 13, 115, 628
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 55, 623
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 5 cut(s) 89, 141, 186, 311, 690
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 285, 387
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 539
BshFI GGCC 3 cut(s) 18, 518, 537
BshNI GGYRCC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 705
BslI CCNNNNNNNGG 2 cut(s) 55, 623
BsmAI GTCTC 1 cut(s) 481
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 3 cut(s) 18, 518, 537
Bsp120I GGGCCC 1 cut(s) 535
Bsp1286I GDGCHC 3 cut(s) 40, 539, 705
Bsp143I GATC 3 cut(s) 86, 184, 199
Bsp1720I GCTNAGC 1 cut(s) 699
Bsp19I CCATGG 2 cut(s) 49, 559
BspANI GGCC 3 cut(s) 18, 518, 537
BspCNI CTCAG 5 cut(s) 90, 142, 187, 310, 691
BspLI GGNNCC 3 cut(s) 173, 536, 537
BspPI GGATC 2 cut(s) 81, 207
BspT107I GGYRCC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 49, 370, 559
BssMI GATC 3 cut(s) 86, 184, 199
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 49, 559
Bst4CI ACNGT 2 cut(s) 659, 694
BstACI GRCGYC 1 cut(s) 45
BstDEI CTNAG 6 cut(s) 98, 150, 195, 297, 332, 699
BstDSI CCRYGG 2 cut(s) 49, 559
BstF5I GGATG 3 cut(s) 13, 115, 628
BstH2I RGCGCY 1 cut(s) 682
BstHHI GCGC 2 cut(s) 681, 711
BstKTI GATC 3 cut(s) 89, 187, 202
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 3 cut(s) 86, 184, 199
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 297
BsuRI GGCC 3 cut(s) 18, 518, 537
BtgI CCRYGG 2 cut(s) 49, 559
BtsCI GGATG 3 cut(s) 13, 115, 628
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 551, 664
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 2 cut(s) 681, 711
Cfr13I GGNCC 4 cut(s) 71, 408, 535, 536
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 27, 172, 249
CviAII CATG 6 cut(s) 4, 50, 227, 328, 510, 560
CviJI RGCY 7 cut(s) 18, 38, 245, 391, 518, 537, 703
CviKI_1 RGCY 7 cut(s) 18, 38, 245, 391, 518, 537, 703
CviQI GTAC 3 cut(s) 27, 172, 249
DdeI CTNAG 6 cut(s) 98, 150, 195, 297, 332, 699
DpnI GATC 3 cut(s) 88, 186, 201
DpnII GATC 3 cut(s) 86, 184, 199
EaeI YGGCCR 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 49, 559
Eco147I AGGCCT 1 cut(s) 518
Eco24I GRGCYC 3 cut(s) 40, 539, 705
Eco47I GGWCC 2 cut(s) 71, 408
Eco47III AGCGCT 1 cut(s) 680
Eco53kI GAGCTC 1 cut(s) 703
Eco81I CCTNAGG 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 535
EcoT14I CCWWGG 2 cut(s) 49, 559
EcoT38I GRGCYC 3 cut(s) 40, 539, 705
ErhI CCWWGG 2 cut(s) 49, 559
FaeI CATG 6 cut(s) 7, 53, 230, 331, 513, 563
FatI CATG 6 cut(s) 3, 49, 226, 327, 509, 559
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 3 cut(s) 20, 102, 615
FriOI GRGCYC 3 cut(s) 40, 539, 705
Fsp4HI GCNGC 1 cut(s) 103
FspI TGCGCA 1 cut(s) 710
GlaI GCGC 2 cut(s) 680, 710
GluI GCNGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 682
HaeIII GGCC 3 cut(s) 18, 518, 537
HgaI GACGC 1 cut(s) 53
HhaI GCGC 2 cut(s) 681, 711
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 6 cut(s) 7, 53, 230, 331, 513, 563
Hin6I GCGC 2 cut(s) 679, 709
HinP1I GCGC 2 cut(s) 679, 709
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 3 cut(s) 284, 413, 474
HphI GGTGA 2 cut(s) 157, 293
Hpy166II GTNNAC 3 cut(s) 614, 655, 662
Hpy188I TCNGA 3 cut(s) 189, 196, 371
Hpy188III TCNNGA 4 cut(s) 62, 74, 97, 299
Hpy8I GTNNAC 3 cut(s) 614, 655, 662
HpyAV CCTTC 2 cut(s) 272, 508
HpyCH4III ACNGT 2 cut(s) 659, 694
HpyCH4V TGCA 3 cut(s) 11, 233, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 6 cut(s) 98, 150, 195, 297, 332, 699
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 6 cut(s) 7, 53, 230, 331, 513, 563
HspAI GCGC 2 cut(s) 679, 709
KpnI GGTACC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 86, 184, 199
LpnPI CCDG 8 cut(s) 87, 110, 153, 284, 327, 334, 438, 663
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 637
MaeIII GTNAC 2 cut(s) 136, 145
MalI GATC 3 cut(s) 88, 186, 201
MboI GATC 3 cut(s) 86, 184, 199
MboII GAAGA 3 cut(s) 311, 314, 650
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 3 cut(s) 40, 539, 705
MluCI AATT 4 cut(s) 428, 527, 618, 641
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 2 cut(s) 143, 451
MnlI CCTC 9 cut(s) 100, 145, 190, 268, 306, 337, 365, 428, 602
MslI CAYNNNNRTG 3 cut(s) 564, 633, 672
Mva1269I GAATGC 1 cut(s) 711
MwoI GCNNNNNNNGC 1 cut(s) 44
NcoI CCATGG 2 cut(s) 49, 559
NdeII GATC 3 cut(s) 86, 184, 199
NlaIII CATG 6 cut(s) 7, 53, 230, 331, 513, 563
NlaIV GGNNCC 3 cut(s) 173, 536, 537
NmuCI GTSAC 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 710
NspI RCATGY 1 cut(s) 331
PceI AGGCCT 1 cut(s) 518
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 2 cut(s) 284, 413
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp124BI GAGCTC 1 cut(s) 705
PspN4I GGNNCC 3 cut(s) 173, 536, 537
PspOMI GGGCCC 1 cut(s) 535
PspPI GGNCC 4 cut(s) 71, 408, 535, 536
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 3 cut(s) 28, 173, 250
RsaNI GTAC 3 cut(s) 27, 172, 249
RseI CAYNNNNRTG 3 cut(s) 564, 633, 672
SacI GAGCTC 1 cut(s) 705
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 3 cut(s) 86, 184, 199
Sau96I GGNCC 4 cut(s) 71, 408, 535, 536
SchI GAGTC 1 cut(s) 483
SduI GDGCHC 3 cut(s) 40, 539, 705
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 2 cut(s) 71, 408
SmiMI CAYNNNNRTG 3 cut(s) 564, 633, 672
Sse9I AATT 4 cut(s) 428, 527, 618, 641
SseBI AGGCCT 1 cut(s) 518
SstI GAGCTC 1 cut(s) 705
StuI AGGCCT 1 cut(s) 518
StyI CCWWGG 2 cut(s) 49, 559
TaaI ACNGT 2 cut(s) 659, 694
TaqI TCGA 1 cut(s) 220
TaqII GACCGA 1 cut(s) 425
TasI AATT 4 cut(s) 428, 527, 618, 641
TfiI GAWTC 2 cut(s) 284, 413
TscAI CASTG 2 cut(s) 558, 664
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 4 cut(s) 104, 152, 311, 651
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 2 cut(s) 558, 664
VpaK11BI GGWCC 2 cut(s) 71, 408
XapI RAATTY 2 cut(s) 428, 641
XceI RCATGY 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.